Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATGCAAAAAGGTGTTCTAGTAGCCTTCCTCCCGGGTTTAGGTTTCATCCTACAGACGAAGAATTGATCATACACTACCTTAAGAATCAAGCCATGTCTCGGCCTTGCCCCGTTTCTATTATTCCGGAAGTTGATATTTACAAGTTTGATCCATGGCAATTACCCGGTTCGTCTTATTAAATAAATATATGATCAAATTATATGTGTTACATATTTTTTTTGCTTAAGTTTTTTTTTGTGTATGAATGAAAACTTGCTAACTTTTTGAATGATTGGGTTGTAGATAAGGCAGAGTTTGGAGAAAAGGAATGGTACTTTTTCACACCAAGAGATAGGAAGTACCCGAATGGGATCCGACCTAATCGAGCCACGTTATCGGGTTATTGGAAGGCTACGGGTACGGATAAAGCCATATATAGTGGAGCTAAGTATGTTGGGATTAAGAAGGCTCTTGTGTTTTACAAGGGAAGACCTCCTAAGGGTTCTAAGACTGATTGGATTATGCATGAATATCGTTTAACGGAGGCTAAGCATCAACCTATCAAGCAAAATGGATCCATGAGGGTAATTTAGTCTTTTTACACTTTATTTCCATTTTCCTCCTTTTTAATAATCATTTTATTTAAAAGTGATATATCTTTTAGGAAATATTCTCATTTTATTAAATGATTCTTATTCGTTGCAATCTAAATAATTGATATACTACATCCGTTCTTGAAGGTTATTTAACCGTGCCTAAATAATGAAAACTTTGACCGTAAATTTTCATTTTAATACACATTAAAATGTTATCATGTAAAATTTTGTTAGATTGCTCTTGTTATGTATTTTCAGAATATCAACTTTTTATAATTTTTTCACATGTTAAATATTGTATTGGAGTCTATGCAAATAAAAAGCGTAAAGAACACTAAGGAACAGAGGTAGTACTATTAGAGTAGCCGTCTCAACAAACAACGTTAAAATTGCTTTTACAAGGATAACCAACCCATTATTAGTGCATGGATTAGTCTCTAATGTTTATTTTTTAACGATTAATAGTGATTTCGAAAATTAACGAGTTTACAATCTGTCGTCGCAGTTGGACGATTGGGTGCTATGTAGAATATACAAGAAGAGGCATGTAGTAAGAGCAGAGGAGAGAACAGAGGAATTAAGTTCACAACAAGAGCAAGTAAGCATGATAGGAGGAGCAAACGATGTTACAATTACAAGTAATCAAAATCAACAAGAAATGAAGTTCCCAAGAACTCAGTCACTATCATACCTATTGGATTTGGACTACTTGGGCCCAATTGCCCACTTACTTAATGACAACAATTCAAGCTTTGATATCCAAACAAGTATGGGCATTAATGCTGGATTCGACCCACATGTGGGCCCATTGTCGTCATACCCGAATATTGGATTAAGCTGCCACCAAACAAATGGGAACCAATCTTATTACAAATAG ATGGATGCAAAAAGGTGTTCTAGTAGCCTTCCTCCCGGGTTTAGGTTTCATCCTACAGACGAAGAATTGATCATACACTACCTTAAGAATCAAGCCATGTCTCGGCCTTGCCCCGTTTCTATTATTCCGGAAGTTGATATTTACAAGTTTGATCCATGGCAATTACCCGATAAGGCAGAGTTTGGAGAAAAGGAATGGTACTTTTTCACACCAAGAGATAGGAAGTACCCGAATGGGATCCGACCTAATCGAGCCACGTTATCGGGTTATTGGAAGGCTACGGGTACGGATAAAGCCATATATAGTGGAGCTAAGTATGTTGGGATTAAGAAGGCTCTTGTGTTTTACAAGGGAAGACCTCCTAAGGGTTCTAAGACTGATTGGATTATGCATGAATATCGTTTAACGGAGGCTAAGCATCAACCTATCAAGCAAAATGGATCCATGAGGTTGGACGATTGGGTGCTATGTAGAATATACAAGAAGAGGCATGTAGTAAGAGCAGAGGAGAGAACAGAGGAATTAAGTTCACAACAAGAGCAAGTAAGCATGATAGGAGGAGCAAACGATGTTACAATTACAAGTAATCAAAATCAACAAGAAATGAAGTTCCCAAGAACTCAGTCACTATCATACCTATTGGATTTGGACTACTTGGGCCCAATTGCCCACTTACTTAATGACAACAATTCAAGCTTTGATATCCAAACAAGTATGGGCATTAATGCTGGATTCGACCCACATGTGGGCCCATTGTCGTCATACCCGAATATTGGATTAAGCTGCCACCAAACAAATGGGAACCAATCTTATTACAAATAG ATGGATGCAAAAAGGTGTTCTAGTAGCCTTCCTCCCGGGTTTAGGTTTCATCCTACAGACGAAGAATTGATCATACACTACCTTAAGAATCAAGCCATGTCTCGGCCTTGCCCCGTTTCTATTATTCCGGAAGTTGATATTTACAAGTTTGATCCATGGCAATTACCCGATAAGGCAGAGTTTGGAGAAAAGGAATGGTACTTTTTCACACCAAGAGATAGGAAGTACCCGAATGGGATCCGACCTAATCGAGCCACGTTATCGGGTTATTGGAAGGCTACGGGTACGGATAAAGCCATATATAGTGGAGCTAAGTATGTTGGGATTAAGAAGGCTCTTGTGTTTTACAAGGGAAGACCTCCTAAGGGTTCTAAGACTGATTGGATTATGCATGAATATCGTTTAACGGAGGCTAAGCATCAACCTATCAAGCAAAATGGATCCATGAGGTTGGACGATTGGGTGCTATGTAGAATATACAAGAAGAGGCATGTAGTAAGAGCAGAGGAGAGAACAGAGGAATTAAGTTCACAACAAGAGCAAGTAAGCATGATAGGAGGAGCAAACGATGTTACAATTACAAGTAATCAAAATCAACAAGAAATGAAGTTCCCAAGAACTCAGTCACTATCATACCTATTGGATTTGGACTACTTGGGCCCAATTGCCCACTTACTTAATGACAACAATTCAAGCTTTGATATCCAAACAAGTATGGGCATTAATGCTGGATTCGACCCACATGTGGGCCCATTGTCGTCATACCCGAATATTGGATTAAGCTGCCACCAAACAAATGGGAACCAATCTTATTACAAATAG MDAKRCSSSLPPGFRFHPTDEELIIHYLKNQAMSRPCPVSIIPEVDIYKFDPWQLPDKAEFGEKEWYFFTPRDRKYPNGIRPNRATLSGYWKATGTDKAIYSGAKYVGIKKALVFYKGRPPKGSKTDWIMHEYRLTEAKHQPIKQNGSMRLDDWVLCRIYKKRHVVRAEERTEELSSQQEQVSMIGGANDVTITSNQNQQEMKFPRTQSLSYLLDLDYLGPIAHLLNDNNSSFDIQTSMGINAGFDPHVGPLSSYPNIGLSCHQTNGNQSYYK Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo21019.1 vs. NCBI nr
Match: gi|902233134|gb|KNA22936.1| (hypothetical protein SOVF_029270 [Spinacia oleracea]) HSP 1 Score: 575.9 bits (1483), Expect = 3.800e-161 Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1
BLAST of Spo21019.1 vs. NCBI nr
Match: gi|731343929|ref|XP_010683140.1| (PREDICTED: NAC transcription factor 29-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 471.1 bits (1211), Expect = 1.300e-129 Identity = 229/276 (82.97%), Postives = 247/276 (89.49%), Query Frame = 1
BLAST of Spo21019.1 vs. NCBI nr
Match: gi|590699908|ref|XP_007046037.1| (NAC domain protein, IPR003441 [Theobroma cacao]) HSP 1 Score: 367.5 bits (942), Expect = 2.100e-98 Identity = 176/250 (70.40%), Postives = 210/250 (84.00%), Query Frame = 1
BLAST of Spo21019.1 vs. NCBI nr
Match: gi|255562922|ref|XP_002522466.1| (PREDICTED: NAC transcription factor 29 [Ricinus communis]) HSP 1 Score: 363.2 bits (931), Expect = 3.900e-97 Identity = 173/242 (71.49%), Postives = 202/242 (83.47%), Query Frame = 1
BLAST of Spo21019.1 vs. NCBI nr
Match: gi|703146060|ref|XP_010108694.1| (NAC domain-containing protein 29 [Morus notabilis]) HSP 1 Score: 359.8 bits (922), Expect = 4.300e-96 Identity = 174/253 (68.77%), Postives = 205/253 (81.03%), Query Frame = 1
BLAST of Spo21019.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RTR3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_029270 PE=4 SV=1) HSP 1 Score: 575.9 bits (1483), Expect = 2.700e-161 Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1
BLAST of Spo21019.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4T4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g153540 PE=4 SV=1) HSP 1 Score: 471.1 bits (1211), Expect = 9.300e-130 Identity = 229/276 (82.97%), Postives = 247/276 (89.49%), Query Frame = 1
BLAST of Spo21019.1 vs. UniProtKB/TrEMBL
Match: A0A061EHU2_THECC (NAC domain protein, IPR003441 OS=Theobroma cacao GN=TCM_011671 PE=4 SV=1) HSP 1 Score: 367.5 bits (942), Expect = 1.400e-98 Identity = 176/250 (70.40%), Postives = 210/250 (84.00%), Query Frame = 1
BLAST of Spo21019.1 vs. UniProtKB/TrEMBL
Match: B9S8Z7_RICCO (NAC domain-containing protein, putative OS=Ricinus communis GN=RCOM_0837530 PE=4 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 2.700e-97 Identity = 173/242 (71.49%), Postives = 202/242 (83.47%), Query Frame = 1
BLAST of Spo21019.1 vs. UniProtKB/TrEMBL
Match: W9S8C6_9ROSA (NAC domain-containing protein 29 OS=Morus notabilis GN=L484_015682 PE=4 SV=1) HSP 1 Score: 359.8 bits (922), Expect = 3.000e-96 Identity = 174/253 (68.77%), Postives = 205/253 (81.03%), Query Frame = 1
BLAST of Spo21019.1 vs. ExPASy Swiss-Prot
Match: NAC29_ARATH (NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1) HSP 1 Score: 321.6 bits (823), Expect = 8.200e-87 Identity = 150/231 (64.94%), Postives = 182/231 (78.79%), Query Frame = 1
BLAST of Spo21019.1 vs. ExPASy Swiss-Prot
Match: NAC18_ARATH (NAC domain-containing protein 18 OS=Arabidopsis thaliana GN=NAC018 PE=2 SV=1) HSP 1 Score: 251.1 bits (640), Expect = 1.400e-65 Identity = 115/164 (70.12%), Postives = 133/164 (81.10%), Query Frame = 1
BLAST of Spo21019.1 vs. ExPASy Swiss-Prot
Match: NAC25_ARATH (NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1) HSP 1 Score: 247.7 bits (631), Expect = 1.500e-64 Identity = 124/212 (58.49%), Postives = 146/212 (68.87%), Query Frame = 1
BLAST of Spo21019.1 vs. ExPASy Swiss-Prot
Match: NAC56_ARATH (NAC transcription factor 56 OS=Arabidopsis thaliana GN=NAC056 PE=2 SV=1) HSP 1 Score: 247.7 bits (631), Expect = 1.500e-64 Identity = 114/168 (67.86%), Postives = 134/168 (79.76%), Query Frame = 1
BLAST of Spo21019.1 vs. ExPASy Swiss-Prot
Match: NAMB2_TRITD (NAC transcription factor NAM-B2 OS=Triticum turgidum subsp. durum GN=NAM-B2 PE=2 SV=1) HSP 1 Score: 246.9 bits (629), Expect = 2.600e-64 Identity = 114/182 (62.64%), Postives = 140/182 (76.92%), Query Frame = 1
BLAST of Spo21019.1 vs. TAIR (Arabidopsis)
Match: AT1G69490.1 (NAC-like, activated by AP3/PI) HSP 1 Score: 321.6 bits (823), Expect = 4.600e-88 Identity = 150/231 (64.94%), Postives = 182/231 (78.79%), Query Frame = 1
BLAST of Spo21019.1 vs. TAIR (Arabidopsis)
Match: AT1G52880.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) HSP 1 Score: 251.1 bits (640), Expect = 7.600e-67 Identity = 115/164 (70.12%), Postives = 133/164 (81.10%), Query Frame = 1
BLAST of Spo21019.1 vs. TAIR (Arabidopsis)
Match: AT1G61110.1 (NAC domain containing protein 25) HSP 1 Score: 247.7 bits (631), Expect = 8.400e-66 Identity = 124/212 (58.49%), Postives = 146/212 (68.87%), Query Frame = 1
BLAST of Spo21019.1 vs. TAIR (Arabidopsis)
Match: AT3G15510.1 (NAC domain containing protein 2) HSP 1 Score: 247.7 bits (631), Expect = 8.400e-66 Identity = 114/168 (67.86%), Postives = 134/168 (79.76%), Query Frame = 1
BLAST of Spo21019.1 vs. TAIR (Arabidopsis)
Match: AT3G04070.1 (NAC domain containing protein 47) HSP 1 Score: 245.7 bits (626), Expect = 3.200e-65 Identity = 138/271 (50.92%), Postives = 168/271 (61.99%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21019.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21019.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21019.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo21019.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|