Spo19967.1 (mRNA)

Overview
NameSpo19967.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionEukaryotic translation initiation factor 3 subunit B (eIF3b) (eIF-3-eta) (eIF3 p110)
LocationSuper_scaffold_217 : 827498 .. 828995 (-)
Sequence length762
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTGTATGATGTATTCCTCTAACCTCTCGTAGTTGAATGTTTGTTAGATTATGGATTTATGGCTTATAGAGATTTTGACATTCAGTGTATTCTGGAAAACCATCTTTCTTCTGAACCTTAGTAACACCCCCTTTACAACACATATGGCGTATCTGTCTCTTAATTTTATTGGTACTCCGTACTTAAGAGTGACAAGTAATACTGCGTTTGAATTCTGAAGTGATAGATCATAATTATAAAAAGATTAGAAACCCTTGGTTGTTTCAAGATATTGGGACCGTGTCTGAGTGTGCTCTTCTTCCGATTCTGTCTGTGACCTGTTTCTTTTCGTTTTAGAGGAAACAAGTGTGCCAAAGTAAAGGGCATCTACTGCTGATTCTTACCAGCAATAATAATTTTTATGCTTTTATGGCCTTGCAGAAAAATCTACAGCACTGGCTTACTGATTCAAAAGCTAGAGATCAGTTTGTTATTCGTGCTGGCGAACATACAGAGGTCTTGTGGAATGATGCTAGACACATGAAGCCAGATCCTGTTTATACTCGCCGGGTATGCATTAACCTTTTTCTTTCCTACTTCCTTTATACATTATTCACAAATAGATGTCAACATGTATCTTTTCATAATCTATCCAGTTGTTTTGAAGCTTGATTTTTGCTAGCAATTAGGTTTCCCTTCAATTCAATTCACAAGGGAAACTTTAGACATTATTTTTAGAGTATGCGTCATCATATTTTTTATGTTGATCATTGGTTTCCTTTTTGTCTTTGCAGTTTTGGACCGAAAGCTTTGTTCAATGGTCACCATTGGGCACTTATTTGGCTACAGTCCACCACCAAGGCGCTGCTGTCTGGGGCGGGGCCGATACTTTTGATCGCATACATCGTTATGCTCATCCTATGGTTTTATTTTTATCTGTATCTGCGTCTTACATGAGGTTAAACAGTTGATTTGATTTATGCGCTTACTGATGCCAAATGTGTTCCAATGTAGGTTAAATTCATTGATTTTTCTCCTGGAGAGAACTTCCTTGTCACTTACAGCAGTCATGAACCAAGCAATCAGGGGACCGGAGGAAGGGGAAGGGATTTTTTTAAAAAAAATTATACAAGAAAATAAAATTCAATCAACTAGATAGTGTAGATTTAATGTTAAACACAATCGACCACGATTCAAAGATTGAGGTAGCTACCGTTTTATTGTCAGAATCAGCGGTTAACTTATCCCTATCAATTATTGAAGGTCGCAGGTTACATGTTATGCATAATTACCATAAATAGTAATATATATGGAGTATACTCTGGGCGCTGGGCCATATTGCTTGATTACCGATATGAACACGTCAAACTATCCGCAATTTTGATGGTGCAGGCGTGTGCACGTAGCTCTAGGTGCACCAGGATTAAAACAACCAACATTAAACACAAAACACGCATTTTCATTAAATTCTCAGAAACAAGAACAATGCCCTTGAACAAAAGAACAATTCCCCTG

mRNA sequence

ATGAAAAATCTACAGCACTGGCTTACTGATTCAAAAGCTAGAGATCAGTTTGTTATTCGTGCTGGCGAACATACAGAGGTCTTGTGGAATGATGCTAGACACATGAAGCCAGATCCTGTTTATACTCGCCGGTTTTGGACCGAAAGCTTTGTTCAATGGTCACCATTGGGCACTTATTTGGCTACAGTCCACCACCAAGGCGCTGCTGTCTGGGGCGGGGCCGATACTTTTGATCGCATACATCGTTATGCTCATCCTATGGTTAAATTCATTGATTTTTCTCCTGGAGAGAACTTCCTTGTCACTTACAGCAGTCATGAACCAAGCAATCAGGGGACCGGAGGAAGGGGAAGGGATTTTTTTAAAAAAAATTATACAAGAAAATAAAATTCAATCAACTAGATAGTGTAGATTTAATGTTAAACACAATCGACCACGATTCAAAGATTGAGGTAGCTACCGTTTTATTGTCAGAATCAGCGGTTAACTTATCCCTATCAATTATTGAAGGTCGCAGGTTACATGTTATGCATAATTACCATAAATAGTAATATATATGGAGTATACTCTGGGCGCTGGGCCATATTGCTTGATTACCGATATGAACACGTCAAACTATCCGCAATTTTGATGGTGCAGGCGTGTGCACGTAGCTCTAGGTGCACCAGGATTAAAACAACCAACATTAAACACAAAACACGCATTTTCATTAAATTCTCAGAAACAAGAACAATGCCCTTGAACAAAAGAACAATTCCCCTG

Coding sequence (CDS)

ATGAAAAATCTACAGCACTGGCTTACTGATTCAAAAGCTAGAGATCAGTTTGTTATTCGTGCTGGCGAACATACAGAGGTCTTGTGGAATGATGCTAGACACATGAAGCCAGATCCTGTTTATACTCGCCGGTTTTGGACCGAAAGCTTTGTTCAATGGTCACCATTGGGCACTTATTTGGCTACAGTCCACCACCAAGGCGCTGCTGTCTGGGGCGGGGCCGATACTTTTGATCGCATACATCGTTATGCTCATCCTATGGTTAAATTCATTGATTTTTCTCCTGGAGAGAACTTCCTTGTCACTTACAGCAGTCATGAACCAAGCAATCAGGGGACCGGAGGAAGGGGAAGGGATTTTTTTAAAAAAAATTATACAAGAAAATAA

Protein sequence

MKNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLATVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSNQGTGGRGRDFFKKNYTRK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo19967Spo19967gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo19967.1Spo19967.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19967.1.CDS.4Spo19967.1.CDS.4CDS
Spo19967.1.CDS.3Spo19967.1.CDS.3CDS
Spo19967.1.CDS.2Spo19967.1.CDS.2CDS
Spo19967.1.CDS.1Spo19967.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19967.1.utr3p.1Spo19967.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19967.1.exon.4Spo19967.1.exon.4exon
Spo19967.1.exon.3Spo19967.1.exon.3exon
Spo19967.1.exon.2Spo19967.1.exon.2exon
Spo19967.1.exon.1Spo19967.1.exon.1exon


Homology
[Close]
BLAST of Spo19967.1 vs. NCBI nr
Match: gi|902196586|gb|KNA13142.1| (hypothetical protein SOVF_119450 [Spinacia oleracea])

HSP 1 Score: 243.4 bits (620), Expect = 2.100e-61
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA
Sbjct: 165 KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 224

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSN 111
           TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSN
Sbjct: 225 TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSN 273
[Close]
BLAST of Spo19967.1 vs. NCBI nr
Match: gi|731328793|ref|XP_010675245.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 213.8 bits (543), Expect = 1.800e-52
Identity = 96/109 (88.07%), Postives = 101/109 (92.66%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           +NLQHWLTD+KARDQFVIRAG+ TEVLWNDAR MKPDPVY R FWTESFVQWSPLGTYLA
Sbjct: 166 ENLQHWLTDAKARDQFVIRAGQDTEVLWNDARQMKPDPVYKRPFWTESFVQWSPLGTYLA 225

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSN 111
           TVH QGAAVWGGA  F+RI RYAHPMVKFIDFSPGEN+LVTYSSHEPSN
Sbjct: 226 TVHRQGAAVWGGASGFNRIQRYAHPMVKFIDFSPGENYLVTYSSHEPSN 274
[Close]
BLAST of Spo19967.1 vs. NCBI nr
Match: gi|731366969|ref|XP_010695357.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 213.0 bits (541), Expect = 3.100e-52
Identity = 94/109 (86.24%), Postives = 102/109 (93.58%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           +NLQHWLTD+KARDQFVIR+G+ TEVLWNDAR MKPDPVY R FWTESFVQWSPLG+YLA
Sbjct: 165 ENLQHWLTDAKARDQFVIRSGQDTEVLWNDARQMKPDPVYKRPFWTESFVQWSPLGSYLA 224

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSN 111
           TVH QGAAVWGGA  F+RIHRYAHPMVKFIDFSPGEN+LVTYS+HEPSN
Sbjct: 225 TVHRQGAAVWGGASGFNRIHRYAHPMVKFIDFSPGENYLVTYSTHEPSN 273
[Close]
BLAST of Spo19967.1 vs. NCBI nr
Match: gi|1012258473|ref|XP_015945461.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Arachis duranensis])

HSP 1 Score: 209.1 bits (531), Expect = 4.400e-51
Identity = 93/115 (80.87%), Postives = 100/115 (86.96%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           +NLQHWLTDSKARDQFVIRAG  TEVLWNDARH+KPDPVY R FWTESFVQWSP+GTYLA
Sbjct: 170 ENLQHWLTDSKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPMGTYLA 229

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSNQGTGGR 117
           T+H QGAAVWGGA TF+R+ RYAHP VK IDFSPGE +LVTYSSHEPSN     R
Sbjct: 230 TIHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284
[Close]
BLAST of Spo19967.1 vs. NCBI nr
Match: gi|1021581784|ref|XP_016180275.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Arachis ipaensis])

HSP 1 Score: 209.1 bits (531), Expect = 4.400e-51
Identity = 93/115 (80.87%), Postives = 100/115 (86.96%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           +NLQHWLTDSKARDQFVIRAG  TEVLWNDARH+KPDPVY R FWTESFVQWSP+GTYLA
Sbjct: 170 ENLQHWLTDSKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPMGTYLA 229

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSNQGTGGR 117
           T+H QGAAVWGGA TF+R+ RYAHP VK IDFSPGE +LVTYSSHEPSN     R
Sbjct: 230 TIHRQGAAVWGGATTFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284
[Close]
BLAST of Spo19967.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R2X5_SPIOL (Eukaryotic translation initiation factor 3 subunit B OS=Spinacia oleracea GN=SOVF_119450 PE=3 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 1.500e-61
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA
Sbjct: 165 KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 224

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSN 111
           TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSN
Sbjct: 225 TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSN 273
[Close]
BLAST of Spo19967.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FBX5_BETVU (Eukaryotic translation initiation factor 3 subunit B OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g084820 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.200e-52
Identity = 96/109 (88.07%), Postives = 101/109 (92.66%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           +NLQHWLTD+KARDQFVIRAG+ TEVLWNDAR MKPDPVY R FWTESFVQWSPLGTYLA
Sbjct: 166 ENLQHWLTDAKARDQFVIRAGQDTEVLWNDARQMKPDPVYKRPFWTESFVQWSPLGTYLA 225

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSN 111
           TVH QGAAVWGGA  F+RI RYAHPMVKFIDFSPGEN+LVTYSSHEPSN
Sbjct: 226 TVHRQGAAVWGGASGFNRIQRYAHPMVKFIDFSPGENYLVTYSSHEPSN 274
[Close]
BLAST of Spo19967.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BC93_BETVU (Eukaryotic translation initiation factor 3 subunit B OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g124380 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.100e-52
Identity = 94/109 (86.24%), Postives = 102/109 (93.58%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           +NLQHWLTD+KARDQFVIR+G+ TEVLWNDAR MKPDPVY R FWTESFVQWSPLG+YLA
Sbjct: 165 ENLQHWLTDAKARDQFVIRSGQDTEVLWNDARQMKPDPVYKRPFWTESFVQWSPLGSYLA 224

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSN 111
           TVH QGAAVWGGA  F+RIHRYAHPMVKFIDFSPGEN+LVTYS+HEPSN
Sbjct: 225 TVHRQGAAVWGGASGFNRIHRYAHPMVKFIDFSPGENYLVTYSTHEPSN 273
[Close]
BLAST of Spo19967.1 vs. UniProtKB/TrEMBL
Match: A0A0B2SCZ8_GLYSO (Eukaryotic translation initiation factor 3 subunit B OS=Glycine soja GN=glysoja_021627 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.000e-51
Identity = 93/115 (80.87%), Postives = 100/115 (86.96%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           +NLQHWLTD+KARDQFVIRAG  TEVLWNDARH+KPDPVY R FWTESFVQWSPLGTYLA
Sbjct: 170 ENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLA 229

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSNQGTGGR 117
           TVH QGAAVWGGA +F+R+ RYAHP VK IDFSPGE +LVTYSSHEPSN     R
Sbjct: 230 TVHRQGAAVWGGAGSFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284
[Close]
BLAST of Spo19967.1 vs. UniProtKB/TrEMBL
Match: A0A151QYS0_CAJCA (Eukaryotic translation initiation factor 3 subunit B OS=Cajanus cajan GN=KK1_043450 PE=3 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 9.000e-51
Identity = 93/115 (80.87%), Postives = 100/115 (86.96%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           +NLQHWLTD+KARDQFVIRAG  TEVLWNDARH+KPDPVY R FWTESFVQWSPLGTYLA
Sbjct: 170 ENLQHWLTDAKARDQFVIRAGSDTEVLWNDARHLKPDPVYKRAFWTESFVQWSPLGTYLA 229

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSNQGTGGR 117
           TVH QGAAVWGGA +F+R+ RYAHP VK IDFSPGE +LVTYSSHEPSN     R
Sbjct: 230 TVHRQGAAVWGGATSFNRLMRYAHPQVKLIDFSPGEKYLVTYSSHEPSNPRDANR 284
[Close]
BLAST of Spo19967.1 vs. ExPASy Swiss-Prot
Match: EIF3B_TOBAC (Eukaryotic translation initiation factor 3 subunit B OS=Nicotiana tabacum GN=TIF3B1 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.900e-46
Identity = 84/109 (77.06%), Postives = 91/109 (83.49%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           +NLQ WLTD KARDQFVIRAG  TEVLWNDAR +KP+ VY R FWTESFVQWSPLGTYLA
Sbjct: 170 ENLQQWLTDEKARDQFVIRAGNDTEVLWNDARQLKPELVYKRSFWTESFVQWSPLGTYLA 229

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSN 111
           TVH QG A+WGGA T +R+ RYAHP VK IDFS  E +LVTYSSHEPSN
Sbjct: 230 TVHRQGGAIWGGATTSNRLMRYAHPQVKLIDFSLAERYLVTYSSHEPSN 278
[Close]
BLAST of Spo19967.1 vs. ExPASy Swiss-Prot
Match: EIF3B_ARATH (Eukaryotic translation initiation factor 3 subunit B OS=Arabidopsis thaliana GN=TIF3B1 PE=1 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.000e-43
Identity = 77/109 (70.64%), Postives = 87/109 (79.82%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           +NLQ WLTD KARDQ VIR+G  TEV WND R   P+PV+ R +WTES+VQWSPLGTYL 
Sbjct: 166 ENLQKWLTDEKARDQLVIRSGPDTEVFWNDTRQKAPEPVHKRPYWTESYVQWSPLGTYLV 225

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSN 111
           T+H QGAAVWGGADTF R+ RY H MVK +DFSPGE +LVTY S EPSN
Sbjct: 226 TLHKQGAAVWGGADTFTRLMRYQHSMVKLVDFSPGEKYLVTYHSQEPSN 274
[Close]
BLAST of Spo19967.1 vs. ExPASy Swiss-Prot
Match: EIF3B_ASPFC (Eukaryotic translation initiation factor 3 subunit B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=prt1 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.600e-24
Identity = 50/104 (48.08%), Postives = 69/104 (66.35%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           ++L+ WL D  ARDQF +  G+   V WN+  H  P+ V  R  WT+ FVQWSP GTYLA
Sbjct: 152 EHLRSWLADPNARDQFALYRGDKVGVFWNNKNH-PPENVVDRAHWTQLFVQWSPKGTYLA 211

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSS 106
           +VH QG  +WGG   F +  ++ HP V+ I+FSPGE++L T+S+
Sbjct: 212 SVHPQGVQLWGG-PAFSKQKQFPHPFVQLIEFSPGESYLTTWSA 253
[Close]
BLAST of Spo19967.1 vs. ExPASy Swiss-Prot
Match: EIF3B_ASPFU (Eukaryotic translation initiation factor 3 subunit B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=prt1 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.600e-24
Identity = 50/104 (48.08%), Postives = 69/104 (66.35%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           ++L+ WL D  ARDQF +  G+   V WN+  H  P+ V  R  WT+ FVQWSP GTYLA
Sbjct: 152 EHLRSWLADPNARDQFALYRGDKVGVFWNNKNH-PPENVVDRAHWTQLFVQWSPKGTYLA 211

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSS 106
           +VH QG  +WGG   F +  ++ HP V+ I+FSPGE++L T+S+
Sbjct: 212 SVHPQGVQLWGG-PAFSKQKQFPHPFVQLIEFSPGESYLTTWSA 253
[Close]
BLAST of Spo19967.1 vs. ExPASy Swiss-Prot
Match: EIF3B_ASPTN (Eukaryotic translation initiation factor 3 subunit B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prt1 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 6.000e-24
Identity = 51/116 (43.97%), Postives = 73/116 (62.93%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           ++L+ WL D  ARDQF +  G+   V WN+ ++  P+ V  R  WT+ FVQWSP GTYLA
Sbjct: 152 EHLRSWLADPNARDQFALYRGDKVGVFWNN-KNNPPENVVDRAHWTQLFVQWSPKGTYLA 211

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSNQGTGGRG 118
           +VH QG  +WGG   F ++ ++ HP V  ++FSP EN++ T+S+  P     GG G
Sbjct: 212 SVHPQGIQLWGG-PAFSKLKQFPHPFVSLVEFSPAENYVTTWSA-RPIQVEEGGSG 264
[Close]
BLAST of Spo19967.1 vs. TAIR (Arabidopsis)
Match: AT5G25780.1 (eukaryotic translation initiation factor 3B-2)

HSP 1 Score: 178.7 bits (452), Expect = 2.300e-45
Identity = 78/109 (71.56%), Postives = 88/109 (80.73%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           +NLQ WLTD KARDQ VIR G  TEV WNDAR  KP+PV+ R +WTES+VQWSP+GTYL 
Sbjct: 167 ENLQKWLTDDKARDQLVIRFGHDTEVYWNDARQKKPEPVHKRSYWTESYVQWSPIGTYLV 226

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSN 111
           T+H QGAAVWGGADTF R+ RY H MVK +DFSPGE +LVTY S EPSN
Sbjct: 227 TLHKQGAAVWGGADTFTRLMRYQHSMVKLVDFSPGEKYLVTYHSQEPSN 275
[Close]
BLAST of Spo19967.1 vs. TAIR (Arabidopsis)
Match: AT5G27640.2 (translation initiation factor 3B1)

HSP 1 Score: 176.4 bits (446), Expect = 1.100e-44
Identity = 77/109 (70.64%), Postives = 87/109 (79.82%), Query Frame = 1 

		  

Query: 2   KNLQHWLTDSKARDQFVIRAGEHTEVLWNDARHMKPDPVYTRRFWTESFVQWSPLGTYLA 61
           +NLQ WLTD KARDQ VIR+G  TEV WND R   P+PV+ R +WTES+VQWSPLGTYL 
Sbjct: 192 ENLQKWLTDEKARDQLVIRSGPDTEVFWNDTRQKAPEPVHKRPYWTESYVQWSPLGTYLV 251

Query: 62  TVHHQGAAVWGGADTFDRIHRYAHPMVKFIDFSPGENFLVTYSSHEPSN 111
           T+H QGAAVWGGADTF R+ RY H MVK +DFSPGE +LVTY S EPSN
Sbjct: 252 TLHKQGAAVWGGADTFTRLMRYQHSMVKLVDFSPGEKYLVTYHSQEPSN 300
The following BLAST results are available for this feature:
BLAST of Spo19967.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902196586|gb|KNA13142.1|2.1e-61100.hypothetical protein SOVF_1194... [more]
gi|731328793|ref|XP_010675245.1|1.8e-5288.0PREDICTED: eukaryotic translat... [more]
gi|731366969|ref|XP_010695357.1|3.1e-5286.2PREDICTED: eukaryotic translat... [more]
gi|1012258473|ref|XP_015945461.1|4.4e-5180.8PREDICTED: eukaryotic translat... [more]
gi|1021581784|ref|XP_016180275.1|4.4e-5180.8PREDICTED: eukaryotic translat... [more]
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BLAST of Spo19967.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R2X5_SPIOL1.5e-61100.Eukaryotic translation initiat... [more]
A0A0J8FBX5_BETVU1.2e-5288.0Eukaryotic translation initiat... [more]
A0A0J8BC93_BETVU2.1e-5286.2Eukaryotic translation initiat... [more]
A0A0B2SCZ8_GLYSO9.0e-5180.8Eukaryotic translation initiat... [more]
A0A151QYS0_CAJCA9.0e-5180.8Eukaryotic translation initiat... [more]
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BLAST of Spo19967.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
EIF3B_TOBAC1.9e-4677.0Eukaryotic translation initiat... [more]
EIF3B_ARATH2.0e-4370.6Eukaryotic translation initiat... [more]
EIF3B_ASPFC1.6e-2448.0Eukaryotic translation initiat... [more]
EIF3B_ASPFU1.6e-2448.0Eukaryotic translation initiat... [more]
EIF3B_ASPTN6.0e-2443.9Eukaryotic translation initiat... [more]
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BLAST of Spo19967.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G25780.12.3e-4571.5eukaryotic translation initiat... [more]
AT5G27640.21.1e-4470.6translation initiation factor ... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011400Eukaryotic translation initiation factor 3 subunit BPANTHERPTHR14068EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATEDcoord: 1..110
score: 1.5
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 51..106
score: 6.
NoneNo IPR availablePANTHERPTHR14068:SF0EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT Bcoord: 1..110
score: 1.5

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0006413 translational initiation
biological_process GO:0006446 regulation of translational initiation
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0005840 ribosome
molecular_function GO:0005515 protein binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0031369 translation initiation factor binding
molecular_function GO:0000166 nucleotide binding