Spo19482.1 (mRNA)

Overview
NameSpo19482.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 77207042 .. 77208550 (+)
Sequence length300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTGGCTCACAGCATGACTCCGTTTTACCCCAAATATTTGTCTCTGTACCCTAAGGAGCTCGCCGATCTTCTTCTGCGTTGCTGGCGGTGGAGGTGGAAAGTCAAGGGAGAGCAGAAGGACGAACGAACAGGAAGGGGAAGAAGAGGGGCGGCTGGGTGGCGTTGGTCGACAGCGAGATGGTCGGAAAGGGAACGGCAGGGGTGACGCTGATGGTTGTGGTCGCGTATTATTGTGGCGCATGAAAGGCGTTACAATTTTGTTATTCTTTTTCCCTAAATTACTTCTACATTTTCCCTAATTTTCTGTATTCCTAGGAAAACGAATCACGTGCGAATTTTCCAATCTGAGTTTTTTTTATTTGTGTTTCTATTTAATTCTAGGTATTGTTTATGTGGTGATTCACACTGATTTCTTTTGAATTGTTGTGCAGATTTATTGAAATATTTGTGGGATTGTAGACGATGCAAAGAGCTATGGTTGGCTCTAGATCTTCTTCAATAATAACCTTCCCCAACTGTGAGGTTTTTGAGAAGGTAAGATCTTATTTTGATTATAATTCTTCATTATTTTAATTTTTATGTATGACTTCCTCTCTTTAATTCATTGTTTTTAGATCAATTGTTAAATAAATTGATTTACTATGTTTTTGGTTATGAATCCTACGAATTCAAGTATGTGAGTAAGTACTTTTCTGGGATTATTTTGTAAAATGGTATCCTGTCATGGTTTTAAATTGTATAATTCTAATTGCCTTAGTTTTAATTAGATTAACGAAAGTTTTCTGTTTCAGAAAAAAGGACTGGGTTTTAGTTTTTATTCCAACAAAAGCATGACAGGCTTAAAGTTTTTTTAAAAAAAGTACTTAAATTGAGGAAGGAGTAACATACACCTTTTTGGCCTACATATGATGCCAGAGTTTTTTAATGAAAGAACATGTCATCTATGCCGAAGTCTTATACATCTATGTTCTTTTATTTTTTTATGTTTTCTTTAATGATAGCTGTAATTTTTCTTTTGTTTGGTGATTAAAACTGTAGAATAGAAATTTCTTATTTGCGATTATACGAATATACGACCGAACTTCAGTTGAAGAATGCCAGAAATTATACACTGTAGCAAATACGATCGGTTTTCGGGAAAAAGAAAGATCTTATATATCAAAGAATGTGGTTCTTCATGGAAGGAATATATGAGTTGATCAGTATTAGTAGTACAATGAATGGGGTTTAGGTATATGGTATTTTAGTGGGTGTTGTTACAACGGAGAGCAGTGATCTATTACGGAATCGACGCATAACTATTTGGTGGGAGGGGTTTTGTTTTCCAACTCCTAGCCGTTTATTTGTCAAGTCTTTAATTTGTTGTTTCTATTATTGACTAGGAGGGCTTTCTCCCTCCACTGATGACAATATTCAATATAAATAAGTTATAATAATATTAATAAATTGATATGTGTAGTTTTACAGTTTTATAATGGACGAAAATGAAGATCAAGGTATATAA

mRNA sequence

ATGTTCTTGGCTCACAGCATGACTCCGTTTTACCCCAAATATTTGTCTCTGTACCCTAAGGAGCTCGCCGATCTTCTTCTGCGTTGCTGGCGGTGGAGGTGGAAAGTCAAGGGAGAGCAGAAGGACGAACGAACAGGAAGGGGAAGAAGAGGGGCGGCTGGGTGGCGTATTGTTTATGTGACGATGCAAAGAGCTATGGTTGGCTCTAGATCTTCTTCAATAATAACCTTCCCCAACTGTGAGGTTTTTGAGAAGTTTTACAGTTTTATAATGGACGAAAATGAAGATCAAGGTATATAA

Coding sequence (CDS)

ATGTTCTTGGCTCACAGCATGACTCCGTTTTACCCCAAATATTTGTCTCTGTACCCTAAGGAGCTCGCCGATCTTCTTCTGCGTTGCTGGCGGTGGAGGTGGAAAGTCAAGGGAGAGCAGAAGGACGAACGAACAGGAAGGGGAAGAAGAGGGGCGGCTGGGTGGCGTATTGTTTATGTGACGATGCAAAGAGCTATGGTTGGCTCTAGATCTTCTTCAATAATAACCTTCCCCAACTGTGAGGTTTTTGAGAAGTTTTACAGTTTTATAATGGACGAAAATGAAGATCAAGGTATATAA

Protein sequence

MFLAHSMTPFYPKYLSLYPKELADLLLRCWRWRWKVKGEQKDERTGRGRRGAAGWRIVYVTMQRAMVGSRSSSIITFPNCEVFEKFYSFIMDENEDQGI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo19482Spo19482gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo19482.1Spo19482.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19482.1.exon.1Spo19482.1.exon.1exon
Spo19482.1.exon.2Spo19482.1.exon.2exon
Spo19482.1.exon.3Spo19482.1.exon.3exon
Spo19482.1.exon.4Spo19482.1.exon.4exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19482.1.CDS.1Spo19482.1.CDS.1CDS
Spo19482.1.CDS.2Spo19482.1.CDS.2CDS
Spo19482.1.CDS.3Spo19482.1.CDS.3CDS
Spo19482.1.CDS.4Spo19482.1.CDS.4CDS


Homology
[Close]
BLAST of Spo19482.1 vs. NCBI nr
Match: gi|902236924|gb|KNA24587.1| (hypothetical protein SOVF_014330 [Spinacia oleracea])

HSP 1 Score: 124.8 bits (312), Expect = 8.500e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

		  

Query: 1  MFLAHSMTPFYPKYLSLYPKELADLLLRCWRWRWKVKGEQKDERTGRGRRGAAGWR 57
          MFLAHSMTPFYPKYLSLYPKELADLLLRCWRWRWKVKGEQKDERTGRGRRGAAGWR
Sbjct: 1  MFLAHSMTPFYPKYLSLYPKELADLLLRCWRWRWKVKGEQKDERTGRGRRGAAGWR 56
[Close]
BLAST of Spo19482.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0C9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_014330 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 5.900e-26
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 

		  

Query: 1  MFLAHSMTPFYPKYLSLYPKELADLLLRCWRWRWKVKGEQKDERTGRGRRGAAGWR 57
          MFLAHSMTPFYPKYLSLYPKELADLLLRCWRWRWKVKGEQKDERTGRGRRGAAGWR
Sbjct: 1  MFLAHSMTPFYPKYLSLYPKELADLLLRCWRWRWKVKGEQKDERTGRGRRGAAGWR 56
The following BLAST results are available for this feature:
BLAST of Spo19482.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902236924|gb|KNA24587.1|8.5e-26100.hypothetical protein SOVF_0143... [more]
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BLAST of Spo19482.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9S0C9_SPIOL5.9e-26100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo19482.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo19482.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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