Spo19475.1 (mRNA)

Overview
NameSpo19475.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr3 : 77459872 .. 77460180 (+)
Sequence length309
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCGGAGGGTGGAGATTTTGGAAATACAAGAGTTTGATGATGGAAATCCCCAACAACAACAACAACAACAACAACAACAACAACAGCCCCTTGATAATCAGCCACATTTGGAAAATGGTCATGCTCATGTTGCTTGATGTATATTCCCTATGATTTTCTTTTTCTTTGTGAAACCCTTGAAAGATTGTAAGTGTCAAGTTATAAATCATACAACTATTTTATAGTTTTTTTTTATTATTAATTGCGGAGTACAAATTAATCTAAGCGTAAAACTATTCAATAATATTAAAACATTATTTCTAAAA

mRNA sequence

ATGAATCGGAGGGTGGAGATTTTGGAAATACAAGAGTTTGATGATGGAAATCCCCAACAACAACAACAACAACAACAACAACAACAACAGCCCCTTGATAATCAGCCACATTTGGAAAATGGTCATGCTCATGTTGCTTGATGTATATTCCCTATGATTTTCTTTTTCTTTGTGAAACCCTTGAAAGATTGTAAGTGTCAAGTTATAAATCATACAACTATTTTATAGTTTTTTTTTATTATTAATTGCGGAGTACAAATTAATCTAAGCGTAAAACTATTCAATAATATTAAAACATTATTTCTAAAA

Coding sequence (CDS)

ATGAATCGGAGGGTGGAGATTTTGGAAATACAAGAGTTTGATGATGGAAATCCCCAACAACAACAACAACAACAACAACAACAACAACAGCCCCTTGATAATCAGCCACATTTGGAAAATGGTCATGCTCATGTTGCTTGA

Protein sequence

MNRRVEILEIQEFDDGNPQQQQQQQQQQQQPLDNQPHLENGHAHVA
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo19475Spo19475gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo19475.1Spo19475.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19475.1.exon.1Spo19475.1.exon.1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19475.1.CDS.1Spo19475.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo19475.1.utr3p.1Spo19475.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo19475.1 vs. NCBI nr
Match: gi|902082070|gb|KNA03147.1| (hypothetical protein SOVF_211910 [Spinacia oleracea])

HSP 1 Score: 81.3 bits (199), Expect = 5.000e-13
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 

		  

Query: 1   MNRRVEILEIQEFDDGNPQQQQQQQQQQQQPLDNQPHLENGHAHVA 47
           MNRRVEILEIQEFDDGNP QQQQQQQQQQQPLDNQPHLENGHAHVA
Sbjct: 57  MNRRVEILEIQEFDDGNP-QQQQQQQQQQQPLDNQPHLENGHAHVA 101
[Close]
BLAST of Spo19475.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q7F0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_211910 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.500e-13
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 1 

		  

Query: 1   MNRRVEILEIQEFDDGNPQQQQQQQQQQQQPLDNQPHLENGHAHVA 47
           MNRRVEILEIQEFDDGNP QQQQQQQQQQQPLDNQPHLENGHAHVA
Sbjct: 57  MNRRVEILEIQEFDDGNP-QQQQQQQQQQQPLDNQPHLENGHAHVA 101
The following BLAST results are available for this feature:
BLAST of Spo19475.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902082070|gb|KNA03147.1|5.0e-1397.8hypothetical protein SOVF_2119... [more]
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BLAST of Spo19475.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9Q7F0_SPIOL3.5e-1397.8Uncharacterized protein OS=Spi... [more]
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BLAST of Spo19475.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo19475.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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