Spo19459.1 (mRNA) | SpinachBase

Overview


Name	Spo19459.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein 5 alpha, chloroplastic (50S ribosomal protein L40) (CL40) (Plastid-specific 50S ribosomal protein 5 alpha) (PSRP-5) (50S ribosomal protein 5 beta, chloroplastic) (50S ribosomal protein 5 gamma, chloroplastic) (Precursor)
Location	SpoScf_03631 : 3424 .. 5995 (+)
Sequence length	1140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTACATTGATTTAATTAATAACATGGGTCACCGCAACTTTGAGGTCAATACTAAATGGAGTTTACCATATCTTCTCCTTAAAATAAGAATAATGTGATCCCCTAAAAAAATACTGAGTATGTGAAAACGCAAATTAAAGACCCGCCCTCGCTCTTACAAAAGCTTATCCAAAAGCCACCCTCGAATTCTACTGCGTTCAGCAGAGAGATGGCACTCCTTTCTCCTCTCCTTTCTCTCTCCTCTGTCCCTCCTATCACTTCCATTGCCGTTTCTTCTTCTTCCTTCCGTGAGTATTTTCTCCCTTTTACTTTCTGGGTTTGAGTTTTCTGCATTATTCATATGATTATGTTACTGAATTTTGATTAGTATCTATCTTTTTTGTGTTTTACATTGTTCAATTGTTTTAGTGCTTCAATACCAACTTTCTGCATCCTGGTTTTCTTTATTGATTTGGTTTATCTTAATTTTGATTTTCATTGAGGCATTTCGTCGAACAGTTATAGTGCTTCTTGGTTTTATGTCATTATGGGTCCAATTTTATGTTATGCGTTATCTGTTTAATCATTAGTTGATGTTAAATTGATTGGAATTCGGACCAATTTTAAGTTACTACTTTGCTCATGGGTTCAATTGGGTTCCCAAATTTACTCTTTTCCCCCAGTTCAATCTAATTGGTTGAATTTCCAATTTGTGTACTCTGTAATTTTAAGTAGTTTTATGGGATTAAGGAGGATGGCCTTTGTTAGTCGGGCCATTAAAATTCTTGACTTGGTTCTCAATTTTCTTTTATTCATAAAAATTAGGACATACATTTTCATCCTCGAACCTCATGTTAATGATTTGTCCTTGTTAGAATATGAGAATGCTACTTTTTGGGGGGGGGGGTTCACCTTGATCTTTGCTTATAGAGAAGATAATTCAGGCAATGTTTCTGCAGCTTTCTTGTTGGGGTTGTTATTTTTCTCCTTTCAAATACCATATCTGTAACCGCCTCAAAAGATATCAGTATGTTAAGTAGGGACTCTTAGAAAGGTTTTGAGGTGCCTTGTATAGTTTTTCAAATGTAGGATGAATCCTAATATGGAGTAAGCATTGTACGGAGTATTAGTTTATGTGTACCGTGAATGAAATCTAGTTTTCTGGTTTCCCTTTACAGTGTGTTTGGATAACAATTTTATAAAAAAAGGGAGGTGAGTGAGGGAGGGAGGGAAGAGTGAGCTTGCATTTTCCTTCCAAATCTTCTCATCGTTGAAAGGATTAGGTTTATTGAAAGGGAGGGAAAATGAATACTCCAATTCTCTTCCCTTCCCTCCTCATAGGTCATATCCAAACAAGGGAAGTTGAATCCCTCCCTTTCCCTCTATATTATCTAACCAAACACATTGTAAAAGATTATATTGATTAAGGTTGATGTCTGGCTTGTATACCATATCAGATTCTGCAGCTTTCTTGCTGGGGTTGTTTTTTTTCTCCTTGTAGATACCATATCAGACTCTCCTTGAGGCAATGGGGTAATGATTAGCAAGGTTTTGAGGTGTCTTGAATCGTAATAAGCATTGTACGGAGTATTGTTGTACGTGTACTGTTGGAATGAAATCTGGTTGCCCTTTAACGTTTGTATTGATTTCTTAGAAAAAGAAATTAAGGTTGATGTCTAGCCTGTATACTGTGTTATATTGTCTTGATAGATGTCTGACTTTTCGAGGTGGGATTTTCAGCAATCAAGCTGCAAAATGTTTCTGTTGCGTTGCTTCCAAGTTTTGGACAACGCTTAGTGGCTCACGGACCCGTAATTGCTCAAAAGAGAGGCACAGTGGTTGCTATGGTGTCAGCTGCAGCAGAGGAAACGGCTGGAGAAGATGGAGATCAGTCAAAGGTTGAAGAAGCTAACATCTCAGTTCAGAACCTTCCACTGGAATCAAAGTTGCAGCTGAAGCTTGAACAGAAGATAAAGATGAAAATGGCAAAAAAGATCAGACTCCGAAGGAACAGGCTTATGCGCAAAAGAAAGCTGAGGAAGAGAGGGGCTTGGCCACCTTCTAAGATGAAGAAGCTCAAGAATGTATAAGAGAAGCAACAGCCAGGTTATTTTTTAGTATCATCTTTTGTAGCTCGTTTTGAAGGAGCAATTCAACTTGTTTTTACGCTCTGATTACTTGAATGAGATTTACTTTTTATGTATTTTTGTTGTAGAAGAGAAACCTTGTCCTGTAGGTGCCAAAGTTGATGAGAAACATAGAAACATAGTATGATCATTTTGTACTTGTTTTTTCTGTTTGTGAATCTATCAAGAGCAGTGTAAATCTTTTTCTCTCGACTTGGTCTTAAATTTCTTCCCTTGGACACTCCCAACTTTTAGCCTTTTTCTTGTGCATGAATAAACATAGTATGGTCATTATGTACTTGTTTTTCTGTTTGTAAATCCTTTTTTCCCGCCTTGCCCTTAAATTTCTCCCCTTCGATACTCCACTTTTAGCCTTTTTCTTGTGCATGAATAGAGCCATAGAAGTTACAAAGCTACCATACATTGGAAGTTATAAAGTTGTGGTTTTTTCTTGTCCAAGGCAAAA

mRNA sequence

AGTTACATTGATTTAATTAATAACATGGGTCACCGCAACTTTGAGGTCAATACTAAATGGAGTTTACCATATCTTCTCCTTAAAATAAGAATAATGTGATCCCCTAAAAAAATACTGAGTATGTGAAAACGCAAATTAAAGACCCGCCCTCGCTCTTACAAAAGCTTATCCAAAAGCCACCCTCGAATTCTACTGCGTTCAGCAGAGAGATGGCACTCCTTTCTCCTCTCCTTTCTCTCTCCTCTGTCCCTCCTATCACTTCCATTGCCGTTTCTTCTTCTTCCTTCCCAATCAAGCTGCAAAATGTTTCTGTTGCGTTGCTTCCAAGTTTTGGACAACGCTTAGTGGCTCACGGACCCGTAATTGCTCAAAAGAGAGGCACAGTGGTTGCTATGGTGTCAGCTGCAGCAGAGGAAACGGCTGGAGAAGATGGAGATCAGTCAAAGGTTGAAGAAGCTAACATCTCAGTTCAGAACCTTCCACTGGAATCAAAGTTGCAGCTGAAGCTTGAACAGAAGATAAAGATGAAAATGGCAAAAAAGATCAGACTCCGAAGGAACAGGCTTATGCGCAAAAGAAAGCTGAGGAAGAGAGGGGCTTGGCCACCTTCTAAGATGAAGAAGCTCAAGAATGTATAAGAGAAGCAACAGCCAGGTTATTTTTTAGTATCATCTTTTGTAGCTCGTTTTGAAGGAGCAATTCAACTTGTTTTTACGCTCTGATTACTTGAATGAGATTTACTTTTTATGTATTTTTGTTGTAGAAGAGAAACCTTGTCCTGTAGGTGCCAAAGTTGATGAGAAACATAGAAACATAGTATGATCATTTTGTACTTGTTTTTTCTGTTTGTGAATCTATCAAGAGCAGTGTAAATCTTTTTCTCTCGACTTGGTCTTAAATTTCTTCCCTTGGACACTCCCAACTTTTAGCCTTTTTCTTGTGCATGAATAAACATAGTATGGTCATTATGTACTTGTTTTTCTGTTTGTAAATCCTTTTTTCCCGCCTTGCCCTTAAATTTCTCCCCTTCGATACTCCACTTTTAGCCTTTTTCTTGTGCATGAATAGAGCCATAGAAGTTACAAAGCTACCATACATTGGAAGTTATAAAGTTGTGGTTTTTTCTTGTCCAAGGCAAAA

Coding sequence (CDS)

ATGGCACTCCTTTCTCCTCTCCTTTCTCTCTCCTCTGTCCCTCCTATCACTTCCATTGCCGTTTCTTCTTCTTCCTTCCCAATCAAGCTGCAAAATGTTTCTGTTGCGTTGCTTCCAAGTTTTGGACAACGCTTAGTGGCTCACGGACCCGTAATTGCTCAAAAGAGAGGCACAGTGGTTGCTATGGTGTCAGCTGCAGCAGAGGAAACGGCTGGAGAAGATGGAGATCAGTCAAAGGTTGAAGAAGCTAACATCTCAGTTCAGAACCTTCCACTGGAATCAAAGTTGCAGCTGAAGCTTGAACAGAAGATAAAGATGAAAATGGCAAAAAAGATCAGACTCCGAAGGAACAGGCTTATGCGCAAAAGAAAGCTGAGGAAGAGAGGGGCTTGGCCACCTTCTAAGATGAAGAAGCTCAAGAATGTATAA

Protein sequence

MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVVAMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLMRKRKLRKRGAWPPSKMKKLKNV

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo19459	Spo19459	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo19459.1	Spo19459.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19459.1.exon.1	Spo19459.1.exon.1	exon
Spo19459.1.exon.2	Spo19459.1.exon.2	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19459.1.utr5p.1	Spo19459.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19459.1.CDS.1	Spo19459.1.CDS.1	CDS
Spo19459.1.CDS.2	Spo19459.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19459.1.utr3p.1	Spo19459.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo19459.1 vs. NCBI nr
Match: gi|8118451|gb|AAF72995.1|AF261940_1 (ribosomal protein 5 precursor [Spinacia oleracea])

HSP 1 Score: 245.7 bits (626), Expect = 4.700e-62
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 1


		  
Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60
           MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV
Sbjct: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60

Query: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120
           AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM
Sbjct: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120

Query: 121 RKRKLRKRGAWPPSKMKKLKNV 143
           RKRKLRKRGAWPPSKMKKLKNV
Sbjct: 121 RKRKLRKRGAWPPSKMKKLKNV 142

[Close]

BLAST of Spo19459.1 vs. NCBI nr
Match: gi|902240533|gb|KNA26006.1| (hypothetical protein SOVF_000530 [Spinacia oleracea])

HSP 1 Score: 237.3 bits (604), Expect = 1.700e-59
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 1


		  
Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60
           MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLP+ GQRL+ HGPVIAQKRGTVV
Sbjct: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPTLGQRLMTHGPVIAQKRGTVV 60

Query: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120
           AMVSAAA+ETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQK+KMKMAKKIRLRRNRLM
Sbjct: 61  AMVSAAADETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKMKMKMAKKIRLRRNRLM 120

Query: 121 RKRKLRKRGAWPPSKMKKLKNV 143
           RKRKLRKRGAWPPSKMKKLKNV
Sbjct: 121 RKRKLRKRGAWPPSKMKKLKNV 142

[Close]

BLAST of Spo19459.1 vs. NCBI nr
Match: gi|132961|sp|P27684.1|PSRP5_SPIOL (RecName: Full=50S ribosomal protein 5 alpha, chloroplastic; AltName: Full=50S ribosomal protein L40; AltName: Full=CL40; AltName: Full=Plastid-specific 50S ribosomal protein 5 alpha; Short=PSRP-5; Contains: RecName: Full=50S ribosomal protein 5 beta, chloroplastic; Contains: RecName: Full=50S ribosomal protein 5 gamma, chloroplastic; Flags: Precursor [Spinacia oleracea])

HSP 1 Score: 232.3 bits (591), Expect = 5.400e-58
Identity = 136/142 (95.77%), Postives = 136/142 (95.77%), Query Frame = 1


		  
Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60
           MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV
Sbjct: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60

Query: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120
           AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRR  L 
Sbjct: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRTGLC 120

Query: 121 RKRKLRKRGAWPPSKMKKLKNV 143
            K  LRKRGAWPPSKMKKLKNV
Sbjct: 121 AKESLRKRGAWPPSKMKKLKNV 142

[Close]

BLAST of Spo19459.1 vs. NCBI nr
Match: gi|731324870|ref|XP_010673204.1| (PREDICTED: 50S ribosomal protein 5 alpha, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 177.9 bits (450), Expect = 1.200e-41
Identity = 109/142 (76.76%), Postives = 124/142 (87.32%), Query Frame = 1


		  
Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60
           MALLSPLLSLS  PPITSIA+SSS FPI+L++VSV LLP+ G  L AH P++AQKRGTVV
Sbjct: 1   MALLSPLLSLSPAPPITSIALSSS-FPIRLRHVSVTLLPTVGHSLQAHAPIVAQKRGTVV 60

Query: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120
           AM SAA EE AGE GDQS+ +E NI VQ+LPLESK+QL LEQK+KMK+AKKIRLRRNRLM
Sbjct: 61  AMASAA-EEPAGEAGDQSESKE-NIPVQSLPLESKVQLNLEQKLKMKIAKKIRLRRNRLM 120

Query: 121 RKRKLRKRGAWPPSKMKKLKNV 143
           RKRK+RK+G WPPSKMKKLKNV
Sbjct: 121 RKRKMRKKGRWPPSKMKKLKNV 139

[Close]

BLAST of Spo19459.1 vs. NCBI nr
Match: gi|697105791|ref|XP_009606723.1| (PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Nicotiana tomentosiformis])

HSP 1 Score: 98.2 bits (243), Expect = 1.200e-17
Identity = 71/141 (50.35%), Postives = 94/141 (66.67%), Query Frame = 1


		  
Query: 7   LLSLSSVP--PITSIAVSSSSFPI-KLQNVSVALLPSFGQRLVAHGPVIAQKRGTVVAMV 66
           LL  ++ P  P++S + S+S+FP  +L N  + L P          P+I  KRG ++A  
Sbjct: 3   LLIFNTAPSVPLSSHSASTSAFPSSRLCNSHITLKPKSYANYHIQAPLIFNKRGALIAK- 62

Query: 67  SAAAEETAGEDGDQSKVE--EANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLMR 126
           +AA  ++ G D  +   E  E ++ V+NLPLESKLQ KL+QKIKMK+AKKIRLRR RL+R
Sbjct: 63  AAADIDSVGSDNPEPAPENNEESVPVENLPLESKLQQKLDQKIKMKLAKKIRLRRKRLVR 122

Query: 127 KRKLRKRGAWPPSKMKKLKNV 143
           KR LRK+G WPPSKMKK KNV
Sbjct: 123 KRHLRKKGRWPPSKMKKNKNV 142

[Close]

BLAST of Spo19459.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S2M7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_000530 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.200e-59
Identity = 136/142 (95.77%), Postives = 140/142 (98.59%), Query Frame = 1


		  
Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60
           MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLP+ GQRL+ HGPVIAQKRGTVV
Sbjct: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPTLGQRLMTHGPVIAQKRGTVV 60

Query: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120
           AMVSAAA+ETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQK+KMKMAKKIRLRRNRLM
Sbjct: 61  AMVSAAADETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKMKMKMAKKIRLRRNRLM 120

Query: 121 RKRKLRKRGAWPPSKMKKLKNV 143
           RKRKLRKRGAWPPSKMKKLKNV
Sbjct: 121 RKRKLRKRGAWPPSKMKKLKNV 142

[Close]

BLAST of Spo19459.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CMB5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g064090 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 8.400e-42
Identity = 109/142 (76.76%), Postives = 124/142 (87.32%), Query Frame = 1


		  
Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60
           MALLSPLLSLS  PPITSIA+SSS FPI+L++VSV LLP+ G  L AH P++AQKRGTVV
Sbjct: 1   MALLSPLLSLSPAPPITSIALSSS-FPIRLRHVSVTLLPTVGHSLQAHAPIVAQKRGTVV 60

Query: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120
           AM SAA EE AGE GDQS+ +E NI VQ+LPLESK+QL LEQK+KMK+AKKIRLRRNRLM
Sbjct: 61  AMASAA-EEPAGEAGDQSESKE-NIPVQSLPLESKVQLNLEQKLKMKIAKKIRLRRNRLM 120

Query: 121 RKRKLRKRGAWPPSKMKKLKNV 143
           RKRK+RK+G WPPSKMKKLKNV
Sbjct: 121 RKRKMRKKGRWPPSKMKKLKNV 139

[Close]

BLAST of Spo19459.1 vs. UniProtKB/TrEMBL
Match: V4SSM9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10013047mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.500e-17
Identity = 66/145 (45.52%), Postives = 94/145 (64.83%), Query Frame = 1


		  
Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPI-KLQNVSVALLPSFGQRLVAHGPVIAQKRGTV 60
           MALL     L S+PP +S A++ ++ P+ +L   ++   P     + +  P++A KRG V
Sbjct: 1   MALLVSYNPLMSLPPSSSSALAVAACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAV 60

Query: 61  VAMVSAAAEETAGEDGDQSKVEEAN--ISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRN 120
           +   S+  + TA  DG +   +     + V  LPLESK Q +LEQK++MK+AKKIRLRR 
Sbjct: 61  IVKASSDIDGTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRK 120

Query: 121 RLMRKRKLRKRGAWPPSKMKKLKNV 143
           RL+RKR++RK+G WPPSKMKKLKNV
Sbjct: 121 RLVRKRRMRKKGRWPPSKMKKLKNV 145

[Close]

BLAST of Spo19459.1 vs. UniProtKB/TrEMBL
Match: A0A067EU38_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g032202mg PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.500e-17
Identity = 66/145 (45.52%), Postives = 94/145 (64.83%), Query Frame = 1


		  
Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPI-KLQNVSVALLPSFGQRLVAHGPVIAQKRGTV 60
           MALL     L S+PP +S A++ ++ P+ +L   ++   P     + +  P++A KRG V
Sbjct: 1   MALLVSYNPLMSLPPSSSSALAVAACPVSRLHFKAIESHPKSSNGVWSCTPLVASKRGAV 60

Query: 61  VAMVSAAAEETAGEDGDQSKVEEAN--ISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRN 120
           +   S+  + TA  DG +   +     + V  LPLESK Q +LEQK++MK+AKKIRLRR 
Sbjct: 61  IVKASSDIDGTAPTDGGEPPSDSTKEVVPVDKLPLESKTQERLEQKMRMKLAKKIRLRRK 120

Query: 121 RLMRKRKLRKRGAWPPSKMKKLKNV 143
           RL+RKR++RK+G WPPSKMKKLKNV
Sbjct: 121 RLVRKRRMRKKGRWPPSKMKKLKNV 145

[Close]

BLAST of Spo19459.1 vs. UniProtKB/TrEMBL
Match: M0U133_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.200e-17
Identity = 72/149 (48.32%), Postives = 96/149 (64.43%), Query Frame = 1


		  
Query: 3   LLSPLLSL----SSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGT 62
           LL PLL      SS PP   + VS+    ++LQ   +    SF    V+     A++R T
Sbjct: 29  LLPPLLYFAPPSSSSPPTLYLPVSAR-LSLRLQRNLILQPRSFDGLTVSLPRAFAERRLT 88

Query: 63  VVAMVSAAAEETAGEDGDQSKVE-----EANISVQNLPLESKLQLKLEQKIKMKMAKKIR 122
           +V     A+ ET G +G +++       E  +SV+NLPLESK+QLKLEQK++MK+AKKIR
Sbjct: 89  IVH----ASSETDGNEGSEAEASPPEASETAMSVENLPLESKMQLKLEQKLRMKLAKKIR 148

Query: 123 LRRNRLMRKRKLRKRGAWPPSKMKKLKNV 143
           LRR RL+RKR++RK+G WPPSKMKKLKNV
Sbjct: 149 LRRKRLLRKRRMRKKGRWPPSKMKKLKNV 172

[Close]

BLAST of Spo19459.1 vs. ExPASy Swiss-Prot
Match: PSRP5_SPIOL (50S ribosomal protein 5 alpha, chloroplastic OS=Spinacia oleracea GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 3.400e-60
Identity = 136/142 (95.77%), Postives = 136/142 (95.77%), Query Frame = 1


		  
Query: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60
           MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV
Sbjct: 1   MALLSPLLSLSSVPPITSIAVSSSSFPIKLQNVSVALLPSFGQRLVAHGPVIAQKRGTVV 60

Query: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLM 120
           AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRR  L 
Sbjct: 61  AMVSAAAEETAGEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRTGLC 120

Query: 121 RKRKLRKRGAWPPSKMKKLKNV 143
            K  LRKRGAWPPSKMKKLKNV
Sbjct: 121 AKESLRKRGAWPPSKMKKLKNV 142

[Close]

BLAST of Spo19459.1 vs. ExPASy Swiss-Prot
Match: PSRP5_PEA (50S ribosomal protein 5, chloroplastic OS=Pisum sativum GN=PSRP5 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.500e-12
Identity = 59/136 (43.38%), Postives = 83/136 (61.03%), Query Frame = 1


		  
Query: 15  PITSIAVSSSSFPIKLQN----VSVALLPSFGQRLVAHGPVIAQKRGTVVAMVSAAAEET 74
           P+TS   SSS FP    N    V + L  +  +      P++ + R   + + SAAA   
Sbjct: 13  PVTS---SSSLFPHPTANPISRVRIGLPTNCLKGFRILTPIVQKPRKNSIFIASAAAGAD 72

Query: 75  A----GEDGDQSKVEEANISVQNLPLESKLQLKLEQKIKMKMAKKIRLRRNRLMRKRKLR 134
           +    G +  +SK E   +SV  LPLESKL+ + E+ +KMK+AKKIRL+R RL++KR+LR
Sbjct: 73  SNVADGVEESESKKESDVVSVDKLPLESKLKEREERMLKMKLAKKIRLKRKRLVQKRRLR 132

Query: 135 KRGAWPPSKMKKLKNV 143
           K+G WPPSKMKKL+ V
Sbjct: 133 KKGNWPPSKMKKLEGV 145

[Close]

BLAST of Spo19459.1 vs. ExPASy Swiss-Prot
Match: PSRP5_ARATH (50S ribosomal protein 5, chloroplastic OS=Arabidopsis thaliana GN=PSRP5 PE=1 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.200e-11
Identity = 60/146 (41.10%), Postives = 90/146 (61.64%), Query Frame = 1


		  
Query: 7   LLSLSSVPPITSIAVSSSSFPIKLQNVS---VALLPSFGQ---RLVAHGPVIAQKRGTVV 66
           LL  +S+P ++S++ SSSS  ++  + +   ++L P+  +   R+      +    G +V
Sbjct: 3   LLCFNSLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESKNRVSLSAYSLNSSHGRIV 62

Query: 67  AMVSAAAEETAG-EDGDQSKVEEANISVQNLPLESKL---QLKLEQKIKMKMAKKIRLRR 126
              +A+  + A  E  ++ K   A + V  LPLESK    +L LE ++KMK+AKKIRLRR
Sbjct: 63  VKAAASGVDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRLRR 122

Query: 127 NRLMRKRKLRKRGAWPPSKMKKLKNV 143
            RL+RKRK+RK+G WPPSKMKK KNV
Sbjct: 123 KRLVRKRKMRKKGRWPPSKMKKNKNV 148

[Close]

BLAST of Spo19459.1 vs. TAIR (Arabidopsis)
Match: AT3G56910.1 (plastid-specific 50S ribosomal protein 5)

HSP 1 Score: 70.1 bits (170), Expect = 1.300e-12
Identity = 60/146 (41.10%), Postives = 90/146 (61.64%), Query Frame = 1


		  
Query: 7   LLSLSSVPPITSIAVSSSSFPIKLQNVS---VALLPSFGQ---RLVAHGPVIAQKRGTVV 66
           LL  +S+P ++S++ SSSS  ++  + +   ++L P+  +   R+      +    G +V
Sbjct: 3   LLCFNSLPSLSSLSSSSSSRLLQSPSFASPVLSLKPNAVESKNRVSLSAYSLNSSHGRIV 62

Query: 67  AMVSAAAEETAG-EDGDQSKVEEANISVQNLPLESKL---QLKLEQKIKMKMAKKIRLRR 126
              +A+  + A  E  ++ K   A + V  LPLESK    +L LE ++KMK+AKKIRLRR
Sbjct: 63  VKAAASGVDGAEPESKEEPKTVVAAVPVDKLPLESKEAKEKLLLELRLKMKLAKKIRLRR 122

Query: 127 NRLMRKRKLRKRGAWPPSKMKKLKNV 143
            RL+RKRK+RK+G WPPSKMKK KNV
Sbjct: 123 KRLVRKRKMRKKGRWPPSKMKKNKNV 148

The following BLAST results are available for this feature:

BLAST of Spo19459.1 vs. NCBI nr
BLAST of Spo19459.1 vs. UniProtKB/TrEMBL
BLAST of Spo19459.1 vs. ExPASy Swiss-Prot
BLAST of Spo19459.1 vs. TAIR (Arabidopsis)

BLAST of Spo19459.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|8118451\|gb\|AAF72995.1\|AF261940_1	4.7e-62	100.	ribosomal protein 5 precursor ...	[more]
gi\|902240533\|gb\|KNA26006.1\|	1.7e-59	95.7	hypothetical protein SOVF_0005...	[more]
gi\|132961\|sp\|P27684.1\|PSRP5_SPIOL	5.4e-58	95.7	RecName: Full=50S ribosomal pr...	[more]
gi\|731324870\|ref\|XP_010673204.1\|	1.2e-41	76.7	PREDICTED: 50S ribosomal prote...	[more]
gi\|697105791\|ref\|XP_009606723.1\|	1.2e-17	50.3	PREDICTED: 50S ribosomal prote...	[more]

BLAST of Spo19459.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S2M7_SPIOL	1.2e-59	95.7	Uncharacterized protein OS=Spi...	[more]
A0A0J8CMB5_BETVU	8.4e-42	76.7	Uncharacterized protein OS=Bet...	[more]
V4SSM9_9ROSI	5.5e-17	45.5	Uncharacterized protein OS=Cit...	[more]
A0A067EU38_CITSI	5.5e-17	45.5	Uncharacterized protein OS=Cit...	[more]
M0U133_MUSAM	7.2e-17	48.3	Uncharacterized protein OS=Mus...	[more]

BLAST of Spo19459.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3


Match Name	E-value	Identity	Description
PSRP5_SPIOL	3.4e-60	95.7	50S ribosomal protein 5 alpha,...	[more]
PSRP5_PEA	1.5e-12	43.3	50S ribosomal protein 5, chlor...	[more]
PSRP5_ARATH	2.2e-11	41.1	50S ribosomal protein 5, chlor...	[more]

BLAST of Spo19459.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT3G56910.1	1.3e-12	41.1	plastid-specific 50S ribosomal...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRODOM	PD031914		coord: 16..142 score: 1.0
None	No IPR available	PANTHER	PTHR34678	FAMILY NOT NAMED	coord: 2..142 score: 9.6

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding