Spo19293.1 (mRNA) | SpinachBase

Overview


Name	Spo19293.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	DUF1677 family protein
Location	chr3 : 27158569 .. 27158886 (+)
Sequence length	318

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTAGAAATAGTAAAATGCGAGTGTTGTGGATTGAAAGAAGAATGCACAGTAGAATACATAAATGCAATAAAAGAAAACTACAATGGAAAATGGCTATGTGGGTTATGCTCAGAAGCAGTGCGAGATGAAGTTAATAGGAATGGTGTTGAAGACGCTGTGAGAGCGCACATGTCTTTCTGCAGCAACTATAATTCCAGCCCGGCTTCGAGGGTCGCTGATGGTATGCGCCAGATGTTAAGAAGAAGGTCTGGAGAGTTGTCTCATTCTACTAAAAAATATGGAAGATCATCTAGTGCTCCTCAAGTCCTTTGA

mRNA sequence

ATGGAAGTAGAAATAGTAAAATGCGAGTGTTGTGGATTGAAAGAAGAATGCACAGTAGAATACATAAATGCAATAAAAGAAAACTACAATGGAAAATGGCTATGTGGGTTATGCTCAGAAGCAGTGCGAGATGAAGTTAATAGGAATGGTGTTGAAGACGCTGTGAGAGCGCACATGTCTTTCTGCAGCAACTATAATTCCAGCCCGGCTTCGAGGGTCGCTGATGGTATGCGCCAGATGTTAAGAAGAAGGTCTGGAGAGTTGTCTCATTCTACTAAAAAATATGGAAGATCATCTAGTGCTCCTCAAGTCCTTTGA

Coding sequence (CDS)

ATGGAAGTAGAAATAGTAAAATGCGAGTGTTGTGGATTGAAAGAAGAATGCACAGTAGAATACATAAATGCAATAAAAGAAAACTACAATGGAAAATGGCTATGTGGGTTATGCTCAGAAGCAGTGCGAGATGAAGTTAATAGGAATGGTGTTGAAGACGCTGTGAGAGCGCACATGTCTTTCTGCAGCAACTATAATTCCAGCCCGGCTTCGAGGGTCGCTGATGGTATGCGCCAGATGTTAAGAAGAAGGTCTGGAGAGTTGTCTCATTCTACTAAAAAATATGGAAGATCATCTAGTGCTCCTCAAGTCCTTTGA

Protein sequence

MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNGVEDAVRAHMSFCSNYNSSPASRVADGMRQMLRRRSGELSHSTKKYGRSSSAPQVL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo19293	Spo19293	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo19293.1	Spo19293.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19293.1.exon.1	Spo19293.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo19293.1.CDS.1	Spo19293.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo19293.1 vs. NCBI nr
Match: gi|902112069|gb|KNA03797.1| (hypothetical protein SOVF_205700 [Spinacia oleracea])

HSP 1 Score: 217.6 bits (553), Expect = 1.000e-53
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


		  
Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNGVEDAVRAHMS 60
           MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNGVEDAVRAHMS
Sbjct: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNGVEDAVRAHMS 60

Query: 61  FCSNYNSSPASRVADGMRQMLRRRSGELSHSTKKYGRSSSAPQVL 106
           FCSNYNSSPASRVADGMRQMLRRRSGELSHSTKKYGRSSSAPQVL
Sbjct: 61  FCSNYNSSPASRVADGMRQMLRRRSGELSHSTKKYGRSSSAPQVL 105

[Close]

BLAST of Spo19293.1 vs. NCBI nr
Match: gi|661897363|emb|CDO99075.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 155.6 bits (392), Expect = 4.800e-35
Identity = 75/113 (66.37%), Postives = 93/113 (82.30%), Query Frame = 1


		  
Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNR----NGVEDAVR 60
           ME+E+VKC+CCGLKE+CT +YI+ +K N++GKWLCGLCSEAVRDEVNR    +G+++AV+
Sbjct: 1   MEIELVKCDCCGLKEDCTQDYISEVKANFDGKWLCGLCSEAVRDEVNRGKKQSGMDEAVK 60

Query: 61  AHMSFCSNYNSSPASRVADGMRQMLRRRSGEL-----SHSTKKYGRSSSAPQV 105
           AHM+FC  Y S+PA RVADGMRQMLRRRSG+L     S S+KKY RSSS  QV
Sbjct: 61  AHMAFCRKYKSNPAIRVADGMRQMLRRRSGDLSSSSSSSSSKKYSRSSSTSQV 113

[Close]

BLAST of Spo19293.1 vs. NCBI nr
Match: gi|747086412|ref|XP_011090706.1| (PREDICTED: uncharacterized protein LOC105171331 [Sesamum indicum])

HSP 1 Score: 154.1 bits (388), Expect = 1.400e-34
Identity = 75/111 (67.57%), Postives = 90/111 (81.08%), Query Frame = 1


		  
Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRN----GVEDAVR 60
           ME+E+VKCECCGLKEECT +YIN +K  ++GKWLCGLCSEAVRDEV+R     GV++AV+
Sbjct: 1   MEIELVKCECCGLKEECTQDYINGVKAKFDGKWLCGLCSEAVRDEVSRGKKQFGVDEAVK 60

Query: 61  AHMSFCSNYNSSPASRVADGMRQMLRRRSGELS---HSTKKYGRSSSAPQV 105
           AHMSFC  Y S+PA RVADGMRQMLRRR+G+ S    S+KKY RS+S  QV
Sbjct: 61  AHMSFCRKYKSNPAIRVADGMRQMLRRRAGDSSSSPSSSKKYSRSASTSQV 111

[Close]

BLAST of Spo19293.1 vs. NCBI nr
Match: gi|720000644|ref|XP_010256092.1| (PREDICTED: uncharacterized protein LOC104596560 [Nelumbo nucifera])

HSP 1 Score: 152.5 bits (384), Expect = 4.000e-34
Identity = 74/114 (64.91%), Postives = 92/114 (80.70%), Query Frame = 1


		  
Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRN----GVEDAVR 60
           ME+E+VKCECCGLKE+CT +YI+ +K N+NGKWLCGLCSEAVRDEVNR     G+E+A++
Sbjct: 1   MEIELVKCECCGLKEDCTQDYISEVKANFNGKWLCGLCSEAVRDEVNRGKKPFGMEEAMK 60

Query: 61  AHMSFCSNYNSSPASRVADGMRQMLRRRSGELSH------STKKYGRSSSAPQV 105
           AHMSFC  + S+PA RVADGMRQ+LRRRSG+LS       ++KKY RS+S  QV
Sbjct: 61  AHMSFCRKFKSNPAVRVADGMRQLLRRRSGDLSSPQSTTTASKKYLRSASTSQV 114

[Close]

BLAST of Spo19293.1 vs. NCBI nr
Match: gi|747051034|ref|XP_011071601.1| (PREDICTED: uncharacterized protein LOC105157009 [Sesamum indicum])

HSP 1 Score: 152.5 bits (384), Expect = 4.000e-34
Identity = 72/112 (64.29%), Postives = 93/112 (83.04%), Query Frame = 1


		  
Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNR-----NGVEDAV 60
           M++E+VKCECCGLKE+CT +YI+ +K N++GKWLCGLCSEAVRDEVNR     +G+E+AV
Sbjct: 1   MDIELVKCECCGLKEDCTQDYISKVKANFDGKWLCGLCSEAVRDEVNRAGKKQSGMEEAV 60

Query: 61  RAHMSFCSNYNSSPASRVADGMRQMLRRRSGELS---HSTKKYGRSSSAPQV 105
           +AHMSFC  Y S+PA +VADGMRQMLRRRSG++S    S+KKY RS+S  ++
Sbjct: 61  KAHMSFCRKYKSNPAVKVADGMRQMLRRRSGDMSTSPSSSKKYSRSASTSRM 112

[Close]

BLAST of Spo19293.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q936_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_205700 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 7.100e-54
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1


		  
Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNGVEDAVRAHMS 60
           MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNGVEDAVRAHMS
Sbjct: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNGVEDAVRAHMS 60

Query: 61  FCSNYNSSPASRVADGMRQMLRRRSGELSHSTKKYGRSSSAPQVL 106
           FCSNYNSSPASRVADGMRQMLRRRSGELSHSTKKYGRSSSAPQVL
Sbjct: 61  FCSNYNSSPASRVADGMRQMLRRRSGELSHSTKKYGRSSSAPQVL 105

[Close]

BLAST of Spo19293.1 vs. UniProtKB/TrEMBL
Match: A0A068TRZ0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026095001 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.300e-35
Identity = 75/113 (66.37%), Postives = 93/113 (82.30%), Query Frame = 1


		  
Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNR----NGVEDAVR 60
           ME+E+VKC+CCGLKE+CT +YI+ +K N++GKWLCGLCSEAVRDEVNR    +G+++AV+
Sbjct: 1   MEIELVKCDCCGLKEDCTQDYISEVKANFDGKWLCGLCSEAVRDEVNRGKKQSGMDEAVK 60

Query: 61  AHMSFCSNYNSSPASRVADGMRQMLRRRSGEL-----SHSTKKYGRSSSAPQV 105
           AHM+FC  Y S+PA RVADGMRQMLRRRSG+L     S S+KKY RSSS  QV
Sbjct: 61  AHMAFCRKYKSNPAIRVADGMRQMLRRRSGDLSSSSSSSSSKKYSRSSSTSQV 113

[Close]

BLAST of Spo19293.1 vs. UniProtKB/TrEMBL
Match: W9R930_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005427 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 2.400e-33
Identity = 73/113 (64.60%), Postives = 90/113 (79.65%), Query Frame = 1


		  
Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRN----GVEDAVR 60
           M++E+VKCECCGLKE+CT +YI  +K  ++GKWLCGLCSEAVRDEV+      G+E+AV+
Sbjct: 1   MDIELVKCECCGLKEDCTQDYITDVKAKFDGKWLCGLCSEAVRDEVSNGKKPFGMEEAVK 60

Query: 61  AHMSFCSNYNSSPASRVADGMRQMLRRRSGEL-----SHSTKKYGRSSSAPQV 105
           AHMSFC  + S+PA RVADGMRQMLRRRSG+L     S S+KKY RSSS+ QV
Sbjct: 61  AHMSFCRKFKSNPAVRVADGMRQMLRRRSGDLSSSPSSSSSKKYSRSSSSSQV 113

[Close]

BLAST of Spo19293.1 vs. UniProtKB/TrEMBL
Match: A0A059D154_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01080 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.100e-33
Identity = 77/128 (60.16%), Postives = 89/128 (69.53%), Query Frame = 1


		  
Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRN--------GVE 60
           ME+E+VKCECCGLKE+CT +YI+ +K  + GKWLCGLCSEAVRDEVNR         GVE
Sbjct: 1   MEIEMVKCECCGLKEDCTQDYISQVKSKFEGKWLCGLCSEAVRDEVNRANSNNKKPFGVE 60

Query: 61  DAVRAHMSFCSNYNSSPASRVADGMRQMLRRRSGEL----------------SHSTKKYG 105
           +AV AHMSFC  Y SSPA RVADGMRQMLRRRSG+L                S S+KKY 
Sbjct: 61  EAVGAHMSFCRKYKSSPAFRVADGMRQMLRRRSGDLSSSSSSSSSSSLSSSSSSSSKKYS 120

[Close]

BLAST of Spo19293.1 vs. UniProtKB/TrEMBL
Match: D7T702_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g03650 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.100e-33
Identity = 74/110 (67.27%), Postives = 88/110 (80.00%), Query Frame = 1


		  
Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNG----VEDAVR 60
           ME+E+VKCECCGLKE+CT EYI+ +K  ++GKWLCGLCSEAVRDEVNR      +EDAV 
Sbjct: 1   MEIELVKCECCGLKEDCTQEYISEVKAKFDGKWLCGLCSEAVRDEVNRGKKPYCLEDAVI 60

Query: 61  AHMSFCSNYNSSPASRVADGMRQMLRRRSGELSHS---TKKYGRSSSAPQ 104
           AHMSFC  + S+PA RVADGMRQMLRRRSG++S S   +KKY RS+S  Q
Sbjct: 61  AHMSFCRKFKSNPAVRVADGMRQMLRRRSGDMSSSPSASKKYTRSASTSQ 110

[Close]

BLAST of Spo19293.1 vs. TAIR (Arabidopsis)
Match: AT4G14819.1 (Protein of unknown function (DUF1677))

HSP 1 Score: 137.5 bits (345), Expect = 4.700e-33
Identity = 67/103 (65.05%), Postives = 82/103 (79.61%), Query Frame = 1


		  
Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRNG--VEDAVRAH 60
           ME+E V CECCGL E+CT  YI+ +K N+ GKWLCGLCSEAV DE +R+   VE+AV AH
Sbjct: 1   MEIESVTCECCGLMEDCTQHYISKVKANFAGKWLCGLCSEAVSDEFSRSSKTVEEAVNAH 60

Query: 61  MSFCSNYNSSPASRVADGMRQMLRRRSGELS-HSTKKYGRSSS 101
           MSFC  +N++PA  VADGMRQMLRRRSGELS   +KK+GRS++
Sbjct: 61  MSFCGKFNANPAELVADGMRQMLRRRSGELSPKMSKKFGRSNT 103

[Close]

BLAST of Spo19293.1 vs. TAIR (Arabidopsis)
Match: AT3G22540.1 (Protein of unknown function (DUF1677))

HSP 1 Score: 133.3 bits (334), Expect = 8.900e-32
Identity = 65/106 (61.32%), Postives = 86/106 (81.13%), Query Frame = 1


		  
Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNR---NGVEDAVRA 60
           ME+E V+CECCGL E+CT +YI+ +K N++ KWLCGLCSEAVRDEV+R     V++AV+A
Sbjct: 1   MEIESVRCECCGLMEDCTQDYISEVKSNFDNKWLCGLCSEAVRDEVSRRKMTTVDEAVKA 60

Query: 61  HMSFCSNY-NSSPASRVADGMRQMLRRRSGELSHS--TKKYGRSSS 101
           H+SFC  +   +PA  VADGMRQMLRRRSGEL++S  +KK+GRS++
Sbjct: 61  HVSFCGKFKKDNPAVHVADGMRQMLRRRSGELTNSSTSKKFGRSNT 106

[Close]

BLAST of Spo19293.1 vs. TAIR (Arabidopsis)
Match: AT1G79770.1 (Protein of unknown function (DUF1677))

HSP 1 Score: 99.0 bits (245), Expect = 1.900e-21
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1


		  
Query: 1   MEVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAV---RDEVNRNGVEDAVRA 60
           +EVE  KCECCG++EECT+EYI  ++E + GKW+CGLCSEAV   RD+    G+E A++ 
Sbjct: 50  VEVEKAKCECCGMREECTMEYIERVREKFFGKWICGLCSEAVKEERDKREEEGLEGALKE 109

Query: 61  HMSFCSNYN----SSPASRVADGMRQMLRR 84
           HMS C  +N      PA   AD MR MLRR
Sbjct: 110 HMSACLRFNKLGREYPALFQADAMRDMLRR 139

[Close]

BLAST of Spo19293.1 vs. TAIR (Arabidopsis)
Match: AT1G72510.1 (Protein of unknown function (DUF1677))

HSP 1 Score: 87.4 bits (215), Expect = 5.600e-18
Identity = 42/91 (46.15%), Postives = 56/91 (61.54%), Query Frame = 1


		  
Query: 2   EVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDEVNRN----GVEDAVRA 61
           E + V C+CCGL EECT  YI  ++E Y GKW+CGLCSEAV+ EV R       E+A+  
Sbjct: 33  EPDSVTCDCCGLTEECTQSYIEMVRERYMGKWICGLCSEAVKYEVMRTKRLLTTEEAMAR 92

Query: 62  HMSFCSNYNSS-----PASRVADGMRQMLRR 84
           HM+ C+ + SS     P   +   MRQ+LR+
Sbjct: 93  HMNMCNKFKSSSPPPNPTGHLISAMRQILRK 123

[Close]

BLAST of Spo19293.1 vs. TAIR (Arabidopsis)
Match: AT5G25840.1 (Protein of unknown function (DUF1677))

HSP 1 Score: 86.7 bits (213), Expect = 9.600e-18
Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 1


		  
Query: 2   EVEIVKCECCGLKEECTVEYINAIKENYNGKWLCGLCSEAVRDE---VNRNGV------E 61
           EVE  KCECCG+ EECT EYI+ ++  ++GK +CGLC +AV  E   +N + V      E
Sbjct: 42  EVEDAKCECCGMSEECTPEYIHRVRSKFSGKLICGLCEKAVEGEMEKMNNSEVLMEKRRE 101

Query: 62  DAVRAHMSFCSNYN----SSPASRVADGMRQMLRRRSGELSHSTKK----YGRSSSAPQV 106
           +AV+ HMS CS +N    S P    A+ +++ML++RS ++  +TK       RSSS    
Sbjct: 102 EAVKVHMSACSRFNRLGRSYPVLYQAEAVKEMLKKRSKKMVGATKPEKGGLARSSSCMPA 161

The following BLAST results are available for this feature:

BLAST of Spo19293.1 vs. NCBI nr
BLAST of Spo19293.1 vs. UniProtKB/TrEMBL
BLAST of Spo19293.1 vs. ExPASy Swiss-Prot
BLAST of Spo19293.1 vs. TAIR (Arabidopsis)

BLAST of Spo19293.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902112069\|gb\|KNA03797.1\|	1.0e-53	100.	hypothetical protein SOVF_2057...	[more]
gi\|661897363\|emb\|CDO99075.1\|	4.8e-35	66.3	unnamed protein product [Coffe...	[more]
gi\|747086412\|ref\|XP_011090706.1\|	1.4e-34	67.5	PREDICTED: uncharacterized pro...	[more]
gi\|720000644\|ref\|XP_010256092.1\|	4.0e-34	64.9	PREDICTED: uncharacterized pro...	[more]
gi\|747051034\|ref\|XP_011071601.1\|	4.0e-34	64.2	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo19293.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9Q936_SPIOL	7.1e-54	100.	Uncharacterized protein OS=Spi...	[more]
A0A068TRZ0_COFCA	3.3e-35	66.3	Uncharacterized protein OS=Cof...	[more]
W9R930_9ROSA	2.4e-33	64.6	Uncharacterized protein OS=Mor...	[more]
A0A059D154_EUCGR	4.1e-33	60.1	Uncharacterized protein OS=Euc...	[more]
D7T702_VITVI	4.1e-33	67.2	Putative uncharacterized prote...	[more]

BLAST of Spo19293.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo19293.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT4G14819.1	4.7e-33	65.0	Protein of unknown function (D...	[more]
AT3G22540.1	8.9e-32	61.3	Protein of unknown function (D...	[more]
AT1G79770.1	1.9e-21	53.3	Protein of unknown function (D...	[more]
AT1G72510.1	5.6e-18	46.1	Protein of unknown function (D...	[more]
AT5G25840.1	9.6e-18	41.3	Protein of unknown function (D...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012876	Protein of unknown function DUF1677, plant	PFAM	PF07911	DUF1677	coord: 3..83 score: 3.5
None	No IPR available	PANTHER	PTHR33108	FAMILY NOT NAMED	coord: 1..101 score: 1.9
None	No IPR available	PANTHER	PTHR33108:SF2	SUBFAMILY NOT NAMED	coord: 1..101 score: 1.9