Spo18987.1 (mRNA)

Overview
NameSpo18987.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_114 : 922215 .. 924574 (-)
Sequence length253
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGCAGAAATCTACTATTTTTTAAATCTAAATCCAAAATGAGATTTCTTTGTGTTGACCTTATTCACTCCAGGTAATTGTATTTATTTATTTTACTTCAATGTTAGATTTTTTTTTCCTTCAATTTTTCTACGGATCGGGACCCTTTAAGATGAATTTGAGTCCCTTTGTTTTGTTCCTGGTGAATTATAGATCTGGTGTTGTGTTTATGAGTTTCTTCTTTTTTTGTTCTGTTTCAAAAAAATTGGTTTTCTCTCTTCAACTTGTCGAGTATTTCGGGAATTAGGGTTATTGATTTTGTTTCTATTATTTTGGTTTGATTCATGATGATGAGGGACCCTGAACGATCCGCAGATTCTATTATGAAGTCACACCTGATATCACAGATGCTCCAAAAGACCAAGTACAGGATCAAGGTTTGTTGGGTTTTTAATATTTAATTTTTTTGCCATTTTTTCAGCTAATAGCTATTGATAATGCTCATTTTTTTCTTATGAATTTTACTTTGCACTTAAATTAATTAAATGATCCTGGAATTGCAATTGTTGCATAAAATGGTGGGTGTTTGGGGGCAATGTGAATCTTCTTATGTCTTGCTCTATTGATGTGTAAGCGTATGAGTCGGTTTTTGGTTTTTAATACATTATGTTGGATCGTAATGATTGAACTAAAGGGTTCTGATGTTTCTGGACTATAGAATCGGGCAACTTTGATAGTCGGGAGATTCATTCAATTGAAGTCACAGACAATGAAAACATTGTAGTTTATTGTTTTTACTGTTGCCAAGCAGGGTCAGGGGTTAGTAACTCTAGGTTGTTGAATTTTCTCCGTTGTATTCATACATTTCATTGTGAGAAGAGAAACAAACAAAATCAATGTGTAGGAGCACAAAAATTTTAGTCTGCACAGTCTTTATTTATCACTAGTAAACTTTAACTTCGAAATTCAACTACTTTATGATATTGAGCTGCAAATTCATCTATAATGTAATGGCTAGGTTAGTAAATTGGCACTGATTTCATATTGAATGAGGATGACATTGCAGAAATGTGTCTGTTGGTGCCCTGTTTGTGTTTATTTTAGTAGCTAATTTTAGGCCTTATTATCATCAACTATCTAGCACTACTACAAAATGCGTCATTTGAGTTTTTTAATTGATTGTTTTTTACAGTCCAACCCCTTCTTTATTTTCGCAGTATTTGCCGCTTGAACAATTTTATAGTTTCGTTTCACTTTTTGTTATTAGATGCTAAGGGATTTCTTAATTGATAATTTTAGAATAAAAATTCAATTGTTACAAGTCTTTTTCCCCCCTCTTGTATCTGACTGTGGATGCAGCCATGATGCATTTAATATCTTCCGTTGTATCATGTTTGATTGATGATTATATTGAGTAATTGTAAACTGCTATTCTAAGTTGTTGTCACATGTGGTTTGCTGGCCATTTTAGGCACAATGAAAGCTTCAGTAATATTTTCAGTTCTAAATATCAAGCATCAGTTACATCATGAATGACAGAGTATACTGAATAAATTTTATCTATTAGTGCCTGGAAGGATAGAAAACATGCTTGTCTATTCTAAGTCTATGTCTCTATTCCTACCAGTTACATTTCCTGTTTCCTGTTAATTTCCATGTTCCCAATTTTACGAGTTTGGTACTAGAATTATTTTCATTACACTATCTAAGTTGATGATGACTGTTTGAGCATCTGCTGGATTTAGATTAATTTCATATTTCTTGATCAACACTACTACAATTTCCGTAGTTTCTCGACGCTGTACAAATTTGCTGAGGCTGGATTTAATCTAAAAAAATCTTATAGAATCTCATTTACACGAGTGTCCAGTTTAGATTTCAGACTATTACATACGGAATACTAGATTCAGGGCAGTTGAGTATTGAATTACTATTTTATTGTCATTTGCATGATTAGGCGTATAGCGTAAATGTTGCACTGGCTGAATATGTCTTATGTATAGCGTAAAAGTTTGACAAGGCGTAACACTACTTGTGTTTTTCAAGAAATAAATGATTCTTGTTCTTGCCAAGATGTATTTCTTGCATTACTCTTCAAGCTGAAGGCCAACTCTTGTTTTTTTTACAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGATGTAAGCTGCTTGTTTCTCAATTCCATAATTCTTCAATCAGAATAGTTTTTTTTAGAAGCTTACAGTGGGGTAAAAACCAACGTGACTGGTGTTTCATTGACTGACTGACCGGTGGTGCACTGGCTGAATATGCAGTGGAAAAAGAGACATGACAGTTGCTAG

mRNA sequence

CTGCAGAAATCTACTATTTTTTAAATCTAAATCCAAAATGAGATTTCTTTGTGTTGACCTTATTCACTCCAGATTCTATTATGAAGTCACACCTGATATCACAGATGCTCCAAAAGACCAAGTACAGGATCAAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGATTGGAAAAAGAGACATGACAGTTGCTAG

Coding sequence (CDS)

ATGAGATTTCTTTGTGTTGACCTTATTCACTCCAGATTCTATTATGAAGTCACACCTGATATCACAGATGCTCCAAAAGACCAAGTACAGGATCAAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGATTGGAAAAAGAGACATGACAGTTGCTAG

Protein sequence

MRFLCVDLIHSRFYYEVTPDITDAPKDQVQDQGTDVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo18987Spo18987gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo18987.1Spo18987.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18987.1.utr5p.1Spo18987.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18987.1.CDS.4Spo18987.1.CDS.4CDS
Spo18987.1.CDS.3Spo18987.1.CDS.3CDS
Spo18987.1.CDS.2Spo18987.1.CDS.2CDS
Spo18987.1.CDS.1Spo18987.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo18987.1.exon.4Spo18987.1.exon.4exon
Spo18987.1.exon.3Spo18987.1.exon.3exon
Spo18987.1.exon.2Spo18987.1.exon.2exon
Spo18987.1.exon.1Spo18987.1.exon.1exon


Homology
[Close]
BLAST of Spo18987.1 vs. NCBI nr
Match: gi|902052257|gb|KNA02862.1| (hypothetical protein SOVF_214630, partial [Spinacia oleracea])

HSP 1 Score: 79.0 bits (193), Expect = 3.800e-12
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 

		  

Query: 35 DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC 72
          DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC
Sbjct: 1  DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC 37
[Close]
BLAST of Spo18987.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6X5_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_214630 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.700e-12
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 1 

		  

Query: 35 DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC 72
          DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC
Sbjct: 1  DVVGEVVEVGSSATKFKAGDKVLTLLSHDWKKRHDSC 37
The following BLAST results are available for this feature:
BLAST of Spo18987.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902052257|gb|KNA02862.1|3.8e-12100.hypothetical protein SOVF_2146... [more]
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BLAST of Spo18987.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9Q6X5_SPIOL2.7e-12100.Uncharacterized protein (Fragm... [more]
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BLAST of Spo18987.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo18987.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011032GroES-likeGENE3D3.90.180.10coord: 31..60
score: 1.
IPR011032GroES-likeunknownSSF50129GroES-likecoord: 32..70
score: 1.3

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0016491 oxidoreductase activity