Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTCATCGGTTTTATCTTTTTTACCGCGTATGTGGGACCCGCCCTCGAGCGGTAAGACAAGGACATTCCGTACTTATCCAACAAAGTAACAATTATTTCCCCTCATTTCTTTTATTATAAATATGGACCGCCATCCTCCTTAATCTCGAAGAATTGGCATTTGAAACATTCAAATATTCTACCCAAAAAACAAATCAAAAAAAATGGGAGTTGAAGACAAAGATCCACTGGCTCAATTGAGTTTACCACCTGGTTTCCGATTTTACCCTACCGATGAAGAACTTTTGGTTCAGTATTTATGTAGGAAAGTTGCTGGTCATGAATTCTCTCTCCAAATCATCGCCGAAATCGATCTTTACAAGTTCGATCCTTGGATTTTACCAAGTAAGTGATTTAGTGATCGAGTAATCAATAGAGAGTATACTTGAATAGATAGAGATAGTATGACCACCGGCACGTGTTGTATTTGTGATTTATGGTTGTATTAACGTGAAATATGTATGATTCTGTATAGGTATGGCGATGTTCGGGGAGAAAGAATGGTATTTCTTTAGCCCAAGGGATCGGAAATACCCAAACGGGTCCCGACCAAATAGAGTAGCTGGGTCGGGGTATTGGAAGGCAACTGGAACAGATAAAATAATCACAACACAAGGGAGAAAGGTTGGAATTAAAAAGGCCCTTGTATTTTATGTCGGTAAAGCACCTAAAGGTACCAAGACTAATTGGATTATGCACGAGTATCGCCTCACAGAACACAACCGTAAAGCCGGTAGTTCCAAGGTTCGTCAACTTACCGCGTCATTAAGCATGTTGTACACACTGTTTTAATTACCGATTGATTGTCTAACGTGTTGATTGATACGGAGTATTTTTTTATTCAACAGTTGGACGACTGGGTATTATGTCGAATCTACAAGAAAAATTCCAGTGCAGCCAAGCCTACAGTAAGTTTGGAGCATAGCACAGCTGAAACATCCTCCTCGTCATCATCGCATCTTGATGACGTGTTAGAATCTTTACCAGAAATCGATCACCGTTCATTCGCCTTGCCACGTATGAATTCTTTCAAGAATAGCAATAGCAATAGCAATGTTGCCCAACAACAACAGCAGCAGCACCAACAACAACAACAACAACAACATCAGCAACAACAAAATCCACAAAGTCACAAATTTAACCTTCAGCAACTGGGGTCGGGTAGTTTTGACTGGGCCTTTCTTGCCGGGTTAACTTCGGTACCTGAATACACTTTCAATGGGTCAACCCAACCTCAATCGGGGAATAATAATGGAAATGACATGTTTGTCCCTTCATTACCACCCTTGTCACAAGTGGAATCTTCTGTGGATAACAAACTTCGTACCACGAGGTTAAGCGATGAGGAGGTCCAAAGTGGTATTTCAACTAATCAAAGATTCAATTCGGGCTATTTCAATCACAACAATACCAACGTGTTCACTCAAAACTACCACAACTCGATGGACTTGTTCGGGACGGGTCATTCAAATCAGTTTTCGGGTTTTGGGTTCGGATTCAGACAGTAGACTCTGGGATTAAACAGTTTTGGGTAGTGAACAACATTGTTGGCAAAAGTTCTGAGGAGGGTATTAGATGTAAATATCTCTCATTTGTTGGGCTAACTTTTGGGGAAAGTAGAAGTGAAGGAAAAGTAAAACAAAGTTTTAGTCTTCGATTAAATTATTTTGGTTTTAGGGAGTGTAACGGAAAGGTAAAAGACTAAAAGGGGGATGGATGAGTTTGTCAATTTTTTTGTCTAGTTTGGTAAAGCTCATGGTATAAGGTTCAATGCACAATGTGATGAAAATCTGAAATTGATAAATGTAATGCCAATATTTGAGGCGCCGAATTTCTTTATCCGGTTCAAATACTTGCACATACAATATTGGTTATTTTGAATGAGATAAAGAAGTTATATTAATTGCTGTTACGACTTATTACAATGTGATAGAATATTAAATATTTGCCCAATATTATTGCCGATGTATTTCTTTATTTTCTGTACACCACCCCTTATTTGATACGGGTATTGCGTGTTTTTCTGAATTAATAAGCATATAAAAGGAAACAATTCGAAGTAACAAATTCTGGATCACAC TCTCATCGGTTTTATCTTTTTTACCGCGTATGTGGGACCCGCCCTCGAGCGGTAAGACAAGGACATTCCGTACTTATCCAACAAAGTAACAATTATTTCCCCTCATTTCTTTTATTATAAATATGGACCGCCATCCTCCTTAATCTCGAAGAATTGGCATTTGAAACATTCAAATATTCTACCCAAAAAACAAATCAAAAAAAATGGGAGTTGAAGACAAAGATCCACTGGCTCAATTGAGTTTACCACCTGGTTTCCGATTTTACCCTACCGATGAAGAACTTTTGGTTCAGTATTTATGTAGGAAAGTTGCTGGTCATGAATTCTCTCTCCAAATCATCGCCGAAATCGATCTTTACAAGTTCGATCCTTGGATTTTACCAAGTATGGCGATGTTCGGGGAGAAAGAATGGTATTTCTTTAGCCCAAGGGATCGGAAATACCCAAACGGGTCCCGACCAAATAGAGTAGCTGGGTCGGGGTATTGGAAGGCAACTGGAACAGATAAAATAATCACAACACAAGGGAGAAAGGTTGGAATTAAAAAGGCCCTTGTATTTTATGTCGGTAAAGCACCTAAAGGTACCAAGACTAATTGGATTATGCACGAGTATCGCCTCACAGAACACAACCGTAAAGCCGGTAGTTCCAAGTTGGACGACTGGGTATTATGTCGAATCTACAAGAAAAATTCCAGTGCAGCCAAGCCTACAGTAAGTTTGGAGCATAGCACAGCTGAAACATCCTCCTCGTCATCATCGCATCTTGATGACGTGTTAGAATCTTTACCAGAAATCGATCACCGTTCATTCGCCTTGCCACGTATGAATTCTTTCAAGAATAGCAATAGCAATAGCAATGTTGCCCAACAACAACAGCAGCAGCACCAACAACAACAACAACAACAACATCAGCAACAACAAAATCCACAAAGTCACAAATTTAACCTTCAGCAACTGGGGTCGGGTAGTTTTGACTGGGCCTTTCTTGCCGGGTTAACTTCGGTACCTGAATACACTTTCAATGGGTCAACCCAACCTCAATCGGGGAATAATAATGGAAATGACATGTTTGTCCCTTCATTACCACCCTTGTCACAAGTGGAATCTTCTGTGGATAACAAACTTCGTACCACGAGGTTAAGCGATGAGGAGGTCCAAAGTGGTATTTCAACTAATCAAAGATTCAATTCGGGCTATTTCAATCACAACAATACCAACGTGTTCACTCAAAACTACCACAACTCGATGGACTTGTTCGGGACGGGTCATTCAAATCAGTTTTCGGGTTTTGGGTTCGGATTCAGACAGTAGACTCTGGGATTAAACAGTTTTGGGTAGTGAACAACATTGTTGGCAAAAGTTCTGAGGAGGGTATTAGATGTAAATATCTCTCATTTGTTGGGCTAACTTTTGGGGAAAGTAGAAGTGAAGGAAAAGTAAAACAAAGTTTTAGTCTTCGATTAAATTATTTTGGTTTTAGGGAGTGTAACGGAAAGGTAAAAGACTAAAAGGGGGATGGATGAGTTTGTCAATTTTTTTGTCTAGTTTGGTAAAGCTCATGGTATAAGGTTCAATGCACAATGTGATGAAAATCTGAAATTGATAAATGTAATGCCAATATTTGAGGCGCCGAATTTCTTTATCCGGTTCAAATACTTGCACATACAATATTGGTTATTTTGAATGAGATAAAGAAGTTATATTAATTGCTGTTACGACTTATTACAATGTGATAGAATATTAAATATTTGCCCAATATTATTGCCGATGTATTTCTTTATTTTCTGTACACCACCCCTTATTTGATACGGGTATTGCGTGTTTTTCTGAATTAATAAGCATATAAAAGGAAACAATTCGAAGTAACAAATTCTGGATCACAC ATGGGAGTTGAAGACAAAGATCCACTGGCTCAATTGAGTTTACCACCTGGTTTCCGATTTTACCCTACCGATGAAGAACTTTTGGTTCAGTATTTATGTAGGAAAGTTGCTGGTCATGAATTCTCTCTCCAAATCATCGCCGAAATCGATCTTTACAAGTTCGATCCTTGGATTTTACCAAGTATGGCGATGTTCGGGGAGAAAGAATGGTATTTCTTTAGCCCAAGGGATCGGAAATACCCAAACGGGTCCCGACCAAATAGAGTAGCTGGGTCGGGGTATTGGAAGGCAACTGGAACAGATAAAATAATCACAACACAAGGGAGAAAGGTTGGAATTAAAAAGGCCCTTGTATTTTATGTCGGTAAAGCACCTAAAGGTACCAAGACTAATTGGATTATGCACGAGTATCGCCTCACAGAACACAACCGTAAAGCCGGTAGTTCCAAGTTGGACGACTGGGTATTATGTCGAATCTACAAGAAAAATTCCAGTGCAGCCAAGCCTACAGTAAGTTTGGAGCATAGCACAGCTGAAACATCCTCCTCGTCATCATCGCATCTTGATGACGTGTTAGAATCTTTACCAGAAATCGATCACCGTTCATTCGCCTTGCCACGTATGAATTCTTTCAAGAATAGCAATAGCAATAGCAATGTTGCCCAACAACAACAGCAGCAGCACCAACAACAACAACAACAACAACATCAGCAACAACAAAATCCACAAAGTCACAAATTTAACCTTCAGCAACTGGGGTCGGGTAGTTTTGACTGGGCCTTTCTTGCCGGGTTAACTTCGGTACCTGAATACACTTTCAATGGGTCAACCCAACCTCAATCGGGGAATAATAATGGAAATGACATGTTTGTCCCTTCATTACCACCCTTGTCACAAGTGGAATCTTCTGTGGATAACAAACTTCGTACCACGAGGTTAAGCGATGAGGAGGTCCAAAGTGGTATTTCAACTAATCAAAGATTCAATTCGGGCTATTTCAATCACAACAATACCAACGTGTTCACTCAAAACTACCACAACTCGATGGACTTGTTCGGGACGGGTCATTCAAATCAGTTTTCGGGTTTTGGGTTCGGATTCAGACAGTAG MGVEDKDPLAQLSLPPGFRFYPTDEELLVQYLCRKVAGHEFSLQIIAEIDLYKFDPWILPSMAMFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITTQGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLTEHNRKAGSSKLDDWVLCRIYKKNSSAAKPTVSLEHSTAETSSSSSSHLDDVLESLPEIDHRSFALPRMNSFKNSNSNSNVAQQQQQQHQQQQQQQHQQQQNPQSHKFNLQQLGSGSFDWAFLAGLTSVPEYTFNGSTQPQSGNNNGNDMFVPSLPPLSQVESSVDNKLRTTRLSDEEVQSGISTNQRFNSGYFNHNNTNVFTQNYHNSMDLFGTGHSNQFSGFGFGFRQ Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo18886.1 vs. NCBI nr
Match: gi|677286706|gb|AIM47115.1| (putative NAC transcription factor [Suaeda liaotungensis]) HSP 1 Score: 597.0 bits (1538), Expect = 2.200e-167 Identity = 311/373 (83.38%), Postives = 335/373 (89.81%), Query Frame = 1
BLAST of Spo18886.1 vs. NCBI nr
Match: gi|731329478|ref|XP_010675611.1| (PREDICTED: NAC domain-containing protein 72 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 560.8 bits (1444), Expect = 1.700e-156 Identity = 302/376 (80.32%), Postives = 322/376 (85.64%), Query Frame = 1
BLAST of Spo18886.1 vs. NCBI nr
Match: gi|902185221|gb|KNA10451.1| (hypothetical protein SOVF_144330, partial [Spinacia oleracea]) HSP 1 Score: 462.2 bits (1188), Expect = 8.300e-127 Identity = 243/278 (87.41%), Postives = 243/278 (87.41%), Query Frame = 1
BLAST of Spo18886.1 vs. NCBI nr
Match: gi|638110961|emb|CDQ51996.1| (NAC transcription factor, partial [Fagus sylvatica]) HSP 1 Score: 439.9 bits (1130), Expect = 4.400e-120 Identity = 240/371 (64.69%), Postives = 264/371 (71.16%), Query Frame = 1
BLAST of Spo18886.1 vs. NCBI nr
Match: gi|590608672|ref|XP_007021328.1| (NAC domain class transcription factor isoform 1 [Theobroma cacao]) HSP 1 Score: 435.6 bits (1119), Expect = 8.400e-119 Identity = 238/372 (63.98%), Postives = 271/372 (72.85%), Query Frame = 1
BLAST of Spo18886.1 vs. UniProtKB/TrEMBL
Match: A0A088FQ49_9CARY (Putative NAC transcription factor OS=Suaeda liaotungensis GN=NAC10 PE=2 SV=1) HSP 1 Score: 597.0 bits (1538), Expect = 1.500e-167 Identity = 311/373 (83.38%), Postives = 335/373 (89.81%), Query Frame = 1
BLAST of Spo18886.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CLZ0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g087440 PE=4 SV=1) HSP 1 Score: 560.8 bits (1444), Expect = 1.200e-156 Identity = 302/376 (80.32%), Postives = 322/376 (85.64%), Query Frame = 1
BLAST of Spo18886.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QV91_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_144330 PE=4 SV=1) HSP 1 Score: 462.2 bits (1188), Expect = 5.800e-127 Identity = 243/278 (87.41%), Postives = 243/278 (87.41%), Query Frame = 1
BLAST of Spo18886.1 vs. UniProtKB/TrEMBL
Match: A0A060VGE3_FAGSY (NAC transcription factor (Fragment) OS=Fagus sylvatica GN=nac PE=4 SV=1) HSP 1 Score: 439.9 bits (1130), Expect = 3.100e-120 Identity = 240/371 (64.69%), Postives = 264/371 (71.16%), Query Frame = 1
BLAST of Spo18886.1 vs. UniProtKB/TrEMBL
Match: A0A061F7J6_THECC (NAC domain class transcription factor isoform 1 OS=Theobroma cacao GN=TCM_031364 PE=4 SV=1) HSP 1 Score: 435.6 bits (1119), Expect = 5.800e-119 Identity = 238/372 (63.98%), Postives = 271/372 (72.85%), Query Frame = 1
BLAST of Spo18886.1 vs. ExPASy Swiss-Prot
Match: NAC72_ARATH (NAC domain-containing protein 72 OS=Arabidopsis thaliana GN=NAC072 PE=2 SV=1) HSP 1 Score: 356.3 bits (913), Expect = 4.000e-97 Identity = 173/218 (79.36%), Postives = 187/218 (85.78%), Query Frame = 1
BLAST of Spo18886.1 vs. ExPASy Swiss-Prot
Match: NAC55_ARATH (NAC domain-containing protein 55 OS=Arabidopsis thaliana GN=NAC055 PE=2 SV=1) HSP 1 Score: 339.3 bits (869), Expect = 5.100e-92 Identity = 189/311 (60.77%), Postives = 219/311 (70.42%), Query Frame = 1
BLAST of Spo18886.1 vs. ExPASy Swiss-Prot
Match: NAC19_ARATH (NAC domain-containing protein 19 OS=Arabidopsis thaliana GN=NAC019 PE=1 SV=1) HSP 1 Score: 316.2 bits (809), Expect = 4.600e-85 Identity = 197/375 (52.53%), Postives = 236/375 (62.93%), Query Frame = 1
BLAST of Spo18886.1 vs. ExPASy Swiss-Prot
Match: NAC48_ORYSJ (NAC domain-containing protein 48 OS=Oryza sativa subsp. japonica GN=NAC48 PE=2 SV=1) HSP 1 Score: 241.9 bits (616), Expect = 1.100e-62 Identity = 116/174 (66.67%), Postives = 132/174 (75.86%), Query Frame = 1
BLAST of Spo18886.1 vs. ExPASy Swiss-Prot
Match: NAC68_ORYSJ (NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1) HSP 1 Score: 240.4 bits (612), Expect = 3.200e-62 Identity = 114/188 (60.64%), Postives = 140/188 (74.47%), Query Frame = 1
BLAST of Spo18886.1 vs. TAIR (Arabidopsis)
Match: AT4G27410.3 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) HSP 1 Score: 345.5 bits (885), Expect = 4.000e-95 Identity = 173/235 (73.62%), Postives = 187/235 (79.57%), Query Frame = 1
BLAST of Spo18886.1 vs. TAIR (Arabidopsis)
Match: AT3G15500.1 (NAC domain containing protein 3) HSP 1 Score: 339.3 bits (869), Expect = 2.900e-93 Identity = 189/311 (60.77%), Postives = 219/311 (70.42%), Query Frame = 1
BLAST of Spo18886.1 vs. TAIR (Arabidopsis)
Match: AT1G52890.1 (NAC domain containing protein 19) HSP 1 Score: 316.2 bits (809), Expect = 2.600e-86 Identity = 197/375 (52.53%), Postives = 236/375 (62.93%), Query Frame = 1
BLAST of Spo18886.1 vs. TAIR (Arabidopsis)
Match: AT1G01720.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) HSP 1 Score: 238.8 bits (608), Expect = 5.300e-63 Identity = 112/161 (69.57%), Postives = 127/161 (78.88%), Query Frame = 1
BLAST of Spo18886.1 vs. TAIR (Arabidopsis)
Match: AT5G08790.1 (NAC (No Apical Meristem) domain transcriptional regulator superfamily protein) HSP 1 Score: 234.2 bits (596), Expect = 1.300e-61 Identity = 122/202 (60.40%), Postives = 142/202 (70.30%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo18886.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo18886.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo18886.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo18886.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
|