Spo17662.1 (mRNA) | SpinachBase

Overview


Name	Spo17662.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	60S ribosomal protein L27a-2
Location	chr5 : 314167 .. 314610 (-)
Sequence length	444

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACCGGATTGAAGAAGAACAGGAAGAAGAGAGGTCACGTTTCCGCCGGTCACGGTCGTATCGGAAAGCACCGAAAGCATCCCGGAGGTCGTGGTAATGCCGGAGGTATGCACCACCACAGAATCATGTTCGATAAGTACCATCCTGGTTACTTCGGTAAGGTCGGTATGCGTTACTTTCACAAGCTGAGGAACAGGTTCCATTGCCCCATCGTCAACATCGACAAACTCTGGTCTATGGTTCCTGAAGATGTCAAGGAGAAGGCCAAAAAAGAAGGCAAGGCTCCAGTTATTGATGTCACTCAGTTTGGGTTCTTTAAGGTTCTTGGTAAGGGTGTTTTGCCTAATTCTCAGCCTGTTGTTGTTAAGGCTAAGTTGATTTCTAAGGTCGCTGAAAAGAAGATCAAGGAGAATGGTGGCGCTGTGCTTCTCACTGCCTAA

mRNA sequence

ATGACGACCGGATTGAAGAAGAACAGGAAGAAGAGAGGTCACGTTTCCGCCGGTCACGGTCGTATCGGAAAGCACCGAAAGCATCCCGGAGGTCGTGGTAATGCCGGAGGTATGCACCACCACAGAATCATGTTCGATAAGTACCATCCTGGTTACTTCGGTAAGGTCGGTATGCGTTACTTTCACAAGCTGAGGAACAGGTTCCATTGCCCCATCGTCAACATCGACAAACTCTGGTCTATGGTTCCTGAAGATGTCAAGGAGAAGGCCAAAAAAGAAGGCAAGGCTCCAGTTATTGATGTCACTCAGTTTGGGTTCTTTAAGGTTCTTGGTAAGGGTGTTTTGCCTAATTCTCAGCCTGTTGTTGTTAAGGCTAAGTTGATTTCTAAGGTCGCTGAAAAGAAGATCAAGGAGAATGGTGGCGCTGTGCTTCTCACTGCCTAA

Coding sequence (CDS)

ATGACGACCGGATTGAAGAAGAACAGGAAGAAGAGAGGTCACGTTTCCGCCGGTCACGGTCGTATCGGAAAGCACCGAAAGCATCCCGGAGGTCGTGGTAATGCCGGAGGTATGCACCACCACAGAATCATGTTCGATAAGTACCATCCTGGTTACTTCGGTAAGGTCGGTATGCGTTACTTTCACAAGCTGAGGAACAGGTTCCATTGCCCCATCGTCAACATCGACAAACTCTGGTCTATGGTTCCTGAAGATGTCAAGGAGAAGGCCAAAAAAGAAGGCAAGGCTCCAGTTATTGATGTCACTCAGTTTGGGTTCTTTAAGGTTCTTGGTAAGGGTGTTTTGCCTAATTCTCAGCCTGTTGTTGTTAAGGCTAAGTTGATTTCTAAGGTCGCTGAAAAGAAGATCAAGGAGAATGGTGGCGCTGTGCTTCTCACTGCCTAA

Protein sequence

MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRYFHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQPVVVKAKLISKVAEKKIKENGGAVLLTA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo17662	Spo17662	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo17662.1	Spo17662.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17662.1.CDS.1	Spo17662.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo17662.1.exon.1	Spo17662.1.exon.1	exon

Homology

[Close]

BLAST of Spo17662.1 vs. NCBI nr
Match: gi|902223832|gb|KNA19605.1| (hypothetical protein SOVF_060020 [Spinacia oleracea])

HSP 1 Score: 299.3 bits (765), Expect = 3.700e-78
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY
Sbjct: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120
           FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP
Sbjct: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120

Query: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 148
           VVVKAKLISKVAEKKIKENGGAVLLTA
Sbjct: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 147

[Close]

BLAST of Spo17662.1 vs. NCBI nr
Match: gi|902194244|gb|KNA12501.1| (hypothetical protein SOVF_125320 [Spinacia oleracea])

HSP 1 Score: 284.3 bits (726), Expect = 1.200e-73
Identity = 139/147 (94.56%), Postives = 143/147 (97.28%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           MTT LKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY
Sbjct: 1   MTTHLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120
           FHKLRNRFHCPIVN+DKLWSMVPEDV+EKA KEGKAPVIDVTQFG+FKVLGKGVLP +Q 
Sbjct: 61  FHKLRNRFHCPIVNLDKLWSMVPEDVREKAAKEGKAPVIDVTQFGYFKVLGKGVLPENQA 120

Query: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 148
           VVVKAKLISKVAEKKIKENGGAVLLTA
Sbjct: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 147

[Close]

BLAST of Spo17662.1 vs. NCBI nr
Match: gi|731335708|ref|XP_010678859.1| (PREDICTED: 60S ribosomal protein L27a-3-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 278.9 bits (712), Expect = 5.200e-72
Identity = 132/147 (89.80%), Postives = 143/147 (97.28%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           MTT  KKNRKKRGHVSAGHGR+GKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRVGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120
           FH+LRN+FHCPIVN+DKLWSMVP+DVKEKA KEGKAPVIDVTQFG+FKVLGKGVLP++Q 
Sbjct: 61  FHRLRNKFHCPIVNLDKLWSMVPDDVKEKASKEGKAPVIDVTQFGYFKVLGKGVLPDNQA 120

Query: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 148
           +VVK+KLISK+AEKKIKENGGAVLLTA
Sbjct: 121 IVVKSKLISKIAEKKIKENGGAVLLTA 147

[Close]

BLAST of Spo17662.1 vs. NCBI nr
Match: gi|731342522|ref|XP_010682436.1| (PREDICTED: 60S ribosomal protein L27a-2-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 278.1 bits (710), Expect = 8.900e-72
Identity = 134/147 (91.16%), Postives = 142/147 (96.60%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           MTT L+KNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY
Sbjct: 1   MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120
           FH+LRN+FHCPIVN+DKLWSMVP+DVKEKA KEGKAPVIDVTQFG+FKVLGKGVLP+ Q 
Sbjct: 61  FHRLRNKFHCPIVNLDKLWSMVPDDVKEKAIKEGKAPVIDVTQFGYFKVLGKGVLPDGQA 120

Query: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 148
           VVVK+KLISK AEKKIKENGGAVLLTA
Sbjct: 121 VVVKSKLISKTAEKKIKENGGAVLLTA 147

[Close]

BLAST of Spo17662.1 vs. NCBI nr
Match: gi|1012100101|ref|XP_015957134.1| (PREDICTED: 60S ribosomal protein L27a-3 [Arachis duranensis])

HSP 1 Score: 273.9 bits (699), Expect = 1.700e-70
Identity = 132/147 (89.80%), Postives = 141/147 (95.92%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           MTT  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRI+FDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120
           FHKLRN+FHCPIVNIDKLWS+VP++VK+KA KE KAP+IDVTQ G+FKVLGKGVLP +QP
Sbjct: 61  FHKLRNKFHCPIVNIDKLWSLVPQEVKDKASKEKKAPLIDVTQHGYFKVLGKGVLPQNQP 120

Query: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 148
           VVVKAKLISKVAEKKIKENGGAVLLTA
Sbjct: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 147

[Close]

BLAST of Spo17662.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJF7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_060020 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 2.600e-78
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY
Sbjct: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120
           FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP
Sbjct: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120

Query: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 148
           VVVKAKLISKVAEKKIKENGGAVLLTA
Sbjct: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 147

[Close]

BLAST of Spo17662.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R117_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_125320 PE=3 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 8.600e-74
Identity = 139/147 (94.56%), Postives = 143/147 (97.28%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           MTT LKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY
Sbjct: 1   MTTHLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120
           FHKLRNRFHCPIVN+DKLWSMVPEDV+EKA KEGKAPVIDVTQFG+FKVLGKGVLP +Q 
Sbjct: 61  FHKLRNRFHCPIVNLDKLWSMVPEDVREKAAKEGKAPVIDVTQFGYFKVLGKGVLPENQA 120

Query: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 148
           VVVKAKLISKVAEKKIKENGGAVLLTA
Sbjct: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 147

[Close]

BLAST of Spo17662.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F4H5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g118030 PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 3.600e-72
Identity = 132/147 (89.80%), Postives = 143/147 (97.28%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           MTT  KKNRKKRGHVSAGHGR+GKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRVGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120
           FH+LRN+FHCPIVN+DKLWSMVP+DVKEKA KEGKAPVIDVTQFG+FKVLGKGVLP++Q 
Sbjct: 61  FHRLRNKFHCPIVNLDKLWSMVPDDVKEKASKEGKAPVIDVTQFGYFKVLGKGVLPDNQA 120

Query: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 148
           +VVK+KLISK+AEKKIKENGGAVLLTA
Sbjct: 121 IVVKSKLISKIAEKKIKENGGAVLLTA 147

[Close]

BLAST of Spo17662.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C2H6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g148200 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 6.200e-72
Identity = 134/147 (91.16%), Postives = 142/147 (96.60%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           MTT L+KNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY
Sbjct: 1   MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120
           FH+LRN+FHCPIVN+DKLWSMVP+DVKEKA KEGKAPVIDVTQFG+FKVLGKGVLP+ Q 
Sbjct: 61  FHRLRNKFHCPIVNLDKLWSMVPDDVKEKAIKEGKAPVIDVTQFGYFKVLGKGVLPDGQA 120

Query: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 148
           VVVK+KLISK AEKKIKENGGAVLLTA
Sbjct: 121 VVVKSKLISKTAEKKIKENGGAVLLTA 147

[Close]

BLAST of Spo17662.1 vs. UniProtKB/TrEMBL
Match: M5WR88_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012969mg PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 2.400e-68
Identity = 126/147 (85.71%), Postives = 140/147 (95.24%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           MTT  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRI+FDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120
           FH+LRN+FHCPIVN+DKLWS+VP+DVK+KA K  +AP++DVTQFG+FKVLGKGVLP+SQP
Sbjct: 61  FHRLRNKFHCPIVNLDKLWSLVPQDVKDKAAKGNEAPLLDVTQFGYFKVLGKGVLPSSQP 120

Query: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 148
           +VVKAKLISK AEKKIKE GGAV+LTA
Sbjct: 121 LVVKAKLISKTAEKKIKEAGGAVVLTA 147

[Close]

BLAST of Spo17662.1 vs. ExPASy Swiss-Prot
Match: R27A2_ARATH (60S ribosomal protein L27a-2 OS=Arabidopsis thaliana GN=RPL27AB PE=2 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 7.300e-66
Identity = 123/147 (83.67%), Postives = 133/147 (90.48%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           M T LKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRI+FDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120
           FHKLRN+F CPIVN+DKLWS+VPEDVK K+ K+   P+IDVTQ GFFKVLGKG LP ++P
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKD-NVPLIDVTQHGFFKVLGKGHLPENKP 120

Query: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 148
            VVKAKLISK AEKKIKE GGAV+LTA
Sbjct: 121 FVVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Spo17662.1 vs. ExPASy Swiss-Prot
Match: R27A3_ARATH (60S ribosomal protein L27a-3 OS=Arabidopsis thaliana GN=RPL27AC PE=2 SV=2)

HSP 1 Score: 250.4 bits (638), Expect = 1.200e-65
Identity = 123/147 (83.67%), Postives = 133/147 (90.48%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           MTT  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRI+FDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120
           FHKLRN+F CPIVN+DKLWS+VPEDVK K+ K+   P+IDVTQ GFFKVLGKG LP ++P
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKD-NVPLIDVTQHGFFKVLGKGHLPENKP 120

Query: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 148
            VVKAKLISK AEKKIKE GGAV+LTA
Sbjct: 121 FVVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Spo17662.1 vs. ExPASy Swiss-Prot
Match: RL27A_DICDI (60S ribosomal protein L27a OS=Dictyostelium discoideum GN=rpl27a PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 6.000e-52
Identity = 99/149 (66.44%), Postives = 123/149 (82.55%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           M T   K+RK RG V AG+GR+GKHRKHPGGRGNAGG+ HHRI FDKYHPGYFGK+GMR+
Sbjct: 1   MPTRFSKHRKSRGDVCAGYGRVGKHRKHPGGRGNAGGLTHHRINFDKYHPGYFGKLGMRH 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEK--AKKEGKAPVIDVTQFGFFKVLGKGVLPNS 120
           FH LRN++HCP V+++K+W++VPE V++   AK +G APV+DVTQ GFFKVLG G+LP +
Sbjct: 61  FHLLRNQYHCPTVSLEKIWTLVPESVRKSLAAKNDGTAPVVDVTQKGFFKVLGHGILP-T 120

Query: 121 QPVVVKAKLISKVAEKKIKENGGAVLLTA 148
           QP++VKA+  SKVAEKKIK  GGA +L A
Sbjct: 121 QPIIVKARYFSKVAEKKIKAVGGACILVA 148

[Close]

BLAST of Spo17662.1 vs. ExPASy Swiss-Prot
Match: RL27A_RAT (60S ribosomal protein L27a OS=Rattus norvegicus GN=Rpl27a PE=1 SV=3)

HSP 1 Score: 195.3 bits (495), Expect = 4.700e-49
Identity = 99/149 (66.44%), Postives = 116/149 (77.85%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           M + L+K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKA--KKEGKAPVIDVTQFGFFKVLGKGVLPNS 120
           +H  RN+  CP VN+DKLW++V E  +  A   K G AP+IDV + G++KVLGKG LP  
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKNGVAPIIDVVRSGYYKVLGKGKLP-K 120

Query: 121 QPVVVKAKLISKVAEKKIKENGGAVLLTA 148
           QPV+VKAK  S+ AE+KIK  GGA +L A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of Spo17662.1 vs. ExPASy Swiss-Prot
Match: RL27A_BOVIN (60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3)

HSP 1 Score: 195.3 bits (495), Expect = 4.700e-49
Identity = 99/149 (66.44%), Postives = 116/149 (77.85%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           M + L+K RK RGHVS GHGRIGKHRKHPGGRGNAGGMHHHRI FDKYHPGYFGKVGMR+
Sbjct: 1   MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGMHHHRINFDKYHPGYFGKVGMRH 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKA--KKEGKAPVIDVTQFGFFKVLGKGVLPNS 120
           +H  RN+  CP VN+DKLW++V E  +  A   K G AP+IDV + G++KVLGKG LP  
Sbjct: 61  YHLKRNQSFCPTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLP-K 120

Query: 121 QPVVVKAKLISKVAEKKIKENGGAVLLTA 148
           QPV+VKAK  S+ AE+KIK  GGA +L A
Sbjct: 121 QPVIVKAKFFSRRAEEKIKGVGGACVLVA 148

[Close]

BLAST of Spo17662.1 vs. TAIR (Arabidopsis)
Match: AT1G23290.1 (Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 251.1 bits (640), Expect = 4.100e-67
Identity = 123/147 (83.67%), Postives = 133/147 (90.48%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           M T LKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRI+FDKYHPGYFGKVGMRY
Sbjct: 1   MATALKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120
           FHKLRN+F CPIVN+DKLWS+VPEDVK K+ K+   P+IDVTQ GFFKVLGKG LP ++P
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSSKD-NVPLIDVTQHGFFKVLGKGHLPENKP 120

Query: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 148
            VVKAKLISK AEKKIKE GGAV+LTA
Sbjct: 121 FVVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Spo17662.1 vs. TAIR (Arabidopsis)
Match: AT1G70600.1 (Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 250.4 bits (638), Expect = 7.000e-67
Identity = 123/147 (83.67%), Postives = 133/147 (90.48%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           MTT  KKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRI+FDKYHPGYFGKVGMRY
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120
           FHKLRN+F CPIVN+DKLWS+VPEDVK K+ K+   P+IDVTQ GFFKVLGKG LP ++P
Sbjct: 61  FHKLRNKFFCPIVNLDKLWSLVPEDVKAKSTKD-NVPLIDVTQHGFFKVLGKGHLPENKP 120

Query: 121 VVVKAKLISKVAEKKIKENGGAVLLTA 148
            VVKAKLISK AEKKIKE GGAV+LTA
Sbjct: 121 FVVKAKLISKTAEKKIKEAGGAVVLTA 146

[Close]

BLAST of Spo17662.1 vs. TAIR (Arabidopsis)
Match: AT1G12960.1 (Ribosomal protein L18e/L15 superfamily protein)

HSP 1 Score: 123.6 bits (309), Expect = 9.900e-29
Identity = 75/146 (51.37%), Postives = 82/146 (56.16%), Query Frame = 1


		  
Query: 1   MTTGLKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRIMFDKYHPGYFGKVGMRY 60
           MTT  KK R  R HVS GHGR GKHRK PG RGNAG                   VGMRY
Sbjct: 1   MTTSRKKTRNLREHVSVGHGRFGKHRKLPGSRGNAG-------------------VGMRY 60

Query: 61  FHKLRNRFHCPIVNIDKLWSMVPEDVKEKAKKEGKAPVIDVTQFGFFKVLGKGVLPNSQP 120
           FHKLRN+F+C IVN+DKLWSMV                           LGKG LP ++P
Sbjct: 61  FHKLRNKFYCQIVNLDKLWSMV---------------------------LGKGFLPENKP 100

Query: 121 VVVKAKLISKVAEKKIKENGGAVLLT 147
           VVVKAKL+S   EKKIKE G AV+LT
Sbjct: 121 VVVKAKLVSNTDEKKIKEAGSAVVLT 100

The following BLAST results are available for this feature:

BLAST of Spo17662.1 vs. NCBI nr
BLAST of Spo17662.1 vs. UniProtKB/TrEMBL
BLAST of Spo17662.1 vs. ExPASy Swiss-Prot
BLAST of Spo17662.1 vs. TAIR (Arabidopsis)

BLAST of Spo17662.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902223832\|gb\|KNA19605.1\|	3.7e-78	100.	hypothetical protein SOVF_0600...	[more]
gi\|902194244\|gb\|KNA12501.1\|	1.2e-73	94.5	hypothetical protein SOVF_1253...	[more]
gi\|731335708\|ref\|XP_010678859.1\|	5.2e-72	89.8	PREDICTED: 60S ribosomal prote...	[more]
gi\|731342522\|ref\|XP_010682436.1\|	8.9e-72	91.1	PREDICTED: 60S ribosomal prote...	[more]
gi\|1012100101\|ref\|XP_015957134.1\|	1.7e-70	89.8	PREDICTED: 60S ribosomal prote...	[more]

BLAST of Spo17662.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RJF7_SPIOL	2.6e-78	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9R117_SPIOL	8.6e-74	94.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8F4H5_BETVU	3.6e-72	89.8	Uncharacterized protein OS=Bet...	[more]
A0A0J8C2H6_BETVU	6.2e-72	91.1	Uncharacterized protein OS=Bet...	[more]
M5WR88_PRUPE	2.4e-68	85.7	Uncharacterized protein OS=Pru...	[more]

BLAST of Spo17662.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
R27A2_ARATH	7.3e-66	83.6	60S ribosomal protein L27a-2 O...	[more]
R27A3_ARATH	1.2e-65	83.6	60S ribosomal protein L27a-3 O...	[more]
RL27A_DICDI	6.0e-52	66.4	60S ribosomal protein L27a OS=...	[more]
RL27A_RAT	4.7e-49	66.4	60S ribosomal protein L27a OS=...	[more]
RL27A_BOVIN	4.7e-49	66.4	60S ribosomal protein L27a OS=...	[more]

BLAST of Spo17662.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G23290.1	4.1e-67	83.6	Ribosomal protein L18e/L15 sup...	[more]
AT1G70600.1	7.0e-67	83.6	Ribosomal protein L18e/L15 sup...	[more]
AT1G12960.1	9.9e-29	51.3	Ribosomal protein L18e/L15 sup...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001196	Ribosomal protein L15, conserved site	PROSITE	PS00475	RIBOSOMAL_L15	coord: 108..140 scor
IPR021131	Ribosomal protein L18e/L15P	PFAM	PF00828	Ribosomal_L27A	coord: 28..144 score: 2.2
IPR021131	Ribosomal protein L18e/L15P	unknown	SSF52080	Ribosomal proteins L15p and L18e	coord: 6..146 score: 1.28
None	No IPR available	GENE3D	3.100.10.10		coord: 26..145 score: 1.2
None	No IPR available	PANTHER	PTHR11721	60S RIBOSOMAL PROTEIN L27A	coord: 1..147 score: 3.4E
None	No IPR available	PANTHER	PTHR11721:SF6	SUBFAMILY NOT NAMED	coord: 1..147 score: 3.4E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome