Spo16821.1 (mRNA) | SpinachBase

Overview


Name	Spo16821.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Chlorophyll a-b binding protein 1, chloroplastic (Chlorophyll a-b protein 140) (CAB-140) (LHCII type I CAB-1) (Precursor)
Location	chr1 : 6395434 .. 6397816 (+)
Sequence length	732

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAACGCCTTAATGAGTTGCGGCATCGCCGCCGTGTTCCCGTCTTCTCTATCTTCTTCAAAGTCTAAGTTCGCCGCCTCCGTACCGTTGGGTAATGTGTCGTGCAATGCCTCTTCACGGTTCACCATGTCGGCTGAATGGATGCCCGGTCAGCCCAGGCCCGCCCATCTTGATGGATCAGCTCCAGGGTATGTATTCATTTATTTTACTTATATTTATAATTTTTACAAATTACAATTTAATTTAATTGGTTCACTTCACCCATTATAAGTGTACATTTTATTCCCGATTGATTACATTAAAAATCATAATTACATACCTAAATCATGATTGAATGCTATCTTTATAATTTTGTCTTATTATATTTTGTTTGGGAAAAGAAGACATAAACTTTGTAACTAGTTGATGATATTATTAGACTTTCAAACATGTTTATCATTGATAATTAAAGCACTATAAAGTTAGTAATGAGTATGGATTGTACAGTGACTTTGGATTTGACCCACTTGGGCTTGGAGAAGTTCCAGAGAATCTGGAGAGATTTAAGGAGTCCGAGCTCATCCATTGCAGATGGGCAATGCTTGCAGTTGTAAGTATTTATTCTGCCTTCCTTATGTGTCCCAATATAATTTAATACTTCTTGTTGGACTTTGTTTTCGTCATCTATAATAAAATAAGGAATTTACTTTAGTTTGATCGGGTTGTTTTATATGCTAATCTTTGTGGTCTGGTCTATTGAGTTTGATTTTGATTTTGATTTTGAGTTTGATTTTGATTTTGATTTTGAGTTTGATTTTGATTTTGATTTTGATTTTGATTTTGATTTTGATTTTGATTTTTGGCTAGCGGATATATATAAAAGAAATGGAGAGAGTAATAAAATATGAGAAGAGATACGTGAGGACCACATACTATAACAATATCAAAATCTTATAATTTTTACTAACACAGTAATTAAAGATAGGCAAATGTGCCAAAGGAAAAGGAAAAGGAAAAGGAAAATGAGAAGAACTTTCGGAAACGGGAGGGAGTACTAAATTGTGATAAACTCGAATCTAATTTTACAAGATGATAATGCAATTGCGTTCATCTCCAAGAATCATCAAAAGAGATTATGTGAATTAAGAGTGTATTAGTATGATAAGTTGCTGTGTTTTGACTATAATGCAATAATGCAGCCAGGGATCCTTGTACCAGAAGCGTTGGGATTAGGAAACTGGGTAAAAGCACAAGAATGGGCAGCCCTTCCAGGAGGTCAAGCAACCTACTTAGGAAACCCAGTTCCATGGGGTAACCTCCCTACTATTTTGGCTATTGAATTCTTAGCTATTGCATTCGTAGAACACCAAAGGAGTATGGAGAAAGACTCTGAGAAGAAGAAGTACCCTGGTGGAGCTTTTGATCCCTTGGGTTATTCTAAGGACCCTAAGAAGTTTGAGGAGTTGAAGCTTAAAGAGATTAAAAATGGTAAGCACATTCTTTTCTTCTCATTGTTTCACAAAACATCCTGTTAGTTAACATGTTAGCCGATGATGTCTTGGCCTAGTGGTTATTACTGAGGGTTTGTGTATACATGATAGGTCTCAACATGAGACTCTCAGGTTCAAATCCCATGGCCTAATTTGCATTGTATATTTATCCTATACGAGCCCTATATGCAAATACCCTATAACACCCCACTCCATTAATGAGATAAAGGACTGTGACCCTTTTAATATTGGAACGACCATGCTACCCATTGGACTACCCTATCCAAACCAAGCCTAGTCTCAAGTTCAATCCCCTGCCCTATTTTGCAATGCACATTTATCCTATAAGAGCCCTATATACAAATACCATATAACAACCCTGTCCATTAATAAGATAAATGACCGAGACGCTTTAATATTGGTACGACCTTGCTACGCATTGGACTACCCTGTCCAAACCAGACCTAGTCTCAGGTTCAAATCCCCTGCCCTAATTTGCAATGTATTTATCCTATAAGAGTCCTATATACAAACACCTTATAACAGCCTTGTCATTAATAAGATAAAGGACCGAGACCCTTTTAACATTGGCACGACCCTGCTACCTATTGGACTACCCTTTCCAAACCAGGCCCATTTATAATGTATATTGTCCTTTAGGATCATTTACACCCTAAAAAAAGAAAAAAACATGTTCATATGCCATATAGCATTACTCTTTTATTTAATAACTGATCGAGGGTTAATGTTAATGGTATATAGGTCGTCTAGCGTTGTTGGCATTCGTGGGGTTCTGCATTCAACAATCAGCATATCCAGGAACAGGTCCGTTGGAAAACTTGGCTACTCATTTGGCTGACCCATGGCACAACAACATCGGAGACATTGTTATCCCTAGAGCACTTTAA

mRNA sequence

ATGGCTTCCAACGCCTTAATGAGTTGCGGCATCGCCGCCGTGTTCCCGTCTTCTCTATCTTCTTCAAAGTCTAAGTTCGCCGCCTCCGTACCGTTGGGTAATGTGTCGTGCAATGCCTCTTCACGGTTCACCATGTCGGCTGAATGGATGCCCGGTCAGCCCAGGCCCGCCCATCTTGATGGATCAGCTCCAGGTGACTTTGGATTTGACCCACTTGGGCTTGGAGAAGTTCCAGAGAATCTGGAGAGATTTAAGGAGTCCGAGCTCATCCATTGCAGATGGGCAATGCTTGCAGTTCCAGGGATCCTTGTACCAGAAGCGTTGGGATTAGGAAACTGGGTAAAAGCACAAGAATGGGCAGCCCTTCCAGGAGGTCAAGCAACCTACTTAGGAAACCCAGTTCCATGGGGTAACCTCCCTACTATTTTGGCTATTGAATTCTTAGCTATTGCATTCGTAGAACACCAAAGGAGTATGGAGAAAGACTCTGAGAAGAAGAAGTACCCTGGTGGAGCTTTTGATCCCTTGGGTTATTCTAAGGACCCTAAGAAGTTTGAGGAGTTGAAGCTTAAAGAGATTAAAAATGGTCGTCTAGCGTTGTTGGCATTCGTGGGGTTCTGCATTCAACAATCAGCATATCCAGGAACAGGTCCGTTGGAAAACTTGGCTACTCATTTGGCTGACCCATGGCACAACAACATCGGAGACATTGTTATCCCTAGAGCACTTTAA

Coding sequence (CDS)

ATGGCTTCCAACGCCTTAATGAGTTGCGGCATCGCCGCCGTGTTCCCGTCTTCTCTATCTTCTTCAAAGTCTAAGTTCGCCGCCTCCGTACCGTTGGGTAATGTGTCGTGCAATGCCTCTTCACGGTTCACCATGTCGGCTGAATGGATGCCCGGTCAGCCCAGGCCCGCCCATCTTGATGGATCAGCTCCAGGTGACTTTGGATTTGACCCACTTGGGCTTGGAGAAGTTCCAGAGAATCTGGAGAGATTTAAGGAGTCCGAGCTCATCCATTGCAGATGGGCAATGCTTGCAGTTCCAGGGATCCTTGTACCAGAAGCGTTGGGATTAGGAAACTGGGTAAAAGCACAAGAATGGGCAGCCCTTCCAGGAGGTCAAGCAACCTACTTAGGAAACCCAGTTCCATGGGGTAACCTCCCTACTATTTTGGCTATTGAATTCTTAGCTATTGCATTCGTAGAACACCAAAGGAGTATGGAGAAAGACTCTGAGAAGAAGAAGTACCCTGGTGGAGCTTTTGATCCCTTGGGTTATTCTAAGGACCCTAAGAAGTTTGAGGAGTTGAAGCTTAAAGAGATTAAAAATGGTCGTCTAGCGTTGTTGGCATTCGTGGGGTTCTGCATTCAACAATCAGCATATCCAGGAACAGGTCCGTTGGAAAACTTGGCTACTCATTTGGCTGACCCATGGCACAACAACATCGGAGACATTGTTATCCCTAGAGCACTTTAA

Protein sequence

MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIPRAL

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo16821	Spo16821	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo16821.1	Spo16821.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16821.1.exon.1	Spo16821.1.exon.1	exon
Spo16821.1.exon.2	Spo16821.1.exon.2	exon
Spo16821.1.exon.3	Spo16821.1.exon.3	exon
Spo16821.1.exon.4	Spo16821.1.exon.4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16821.1.CDS.1	Spo16821.1.CDS.1	CDS
Spo16821.1.CDS.2	Spo16821.1.CDS.2	CDS
Spo16821.1.CDS.3	Spo16821.1.CDS.3	CDS
Spo16821.1.CDS.4	Spo16821.1.CDS.4	CDS

Homology

[Close]

BLAST of Spo16821.1 vs. NCBI nr
Match: gi|902229792|gb|KNA21599.1| (hypothetical protein SOVF_041770 [Spinacia oleracea])

HSP 1 Score: 501.9 bits (1291), Expect = 6.300e-139
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 1


		  
Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD
Sbjct: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK
Sbjct: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP
Sbjct: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240

Query: 241 RAL 244
           RAL
Sbjct: 241 RAL 243

[Close]

BLAST of Spo16821.1 vs. NCBI nr
Match: gi|731363359|ref|XP_010693392.1| (PREDICTED: chlorophyll a-b binding protein 6, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 479.2 bits (1232), Expect = 4.300e-132
Identity = 231/243 (95.06%), Postives = 236/243 (97.12%), Query Frame = 1


		  
Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MASNAL SCGIAAVFPSSLSSSKSKFAASVPL N+SCN SSRFTMSAEWMPGQPRP +LD
Sbjct: 1   MASNALTSCGIAAVFPSSLSSSKSKFAASVPLVNLSCNVSSRFTMSAEWMPGQPRPPYLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK
Sbjct: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DPKKFEELK+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGDI+IP
Sbjct: 181 DPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDILIP 240

Query: 241 RAL 244
             L
Sbjct: 241 PTL 243

[Close]

BLAST of Spo16821.1 vs. NCBI nr
Match: gi|698553114|ref|XP_009769851.1| (PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Nicotiana sylvestris])

HSP 1 Score: 458.8 bits (1179), Expect = 6.100e-126
Identity = 218/243 (89.71%), Postives = 230/243 (94.65%), Query Frame = 1


		  
Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MAS ALMSCGIAAV PS LSSSKSKFAA+VP    + NA+SRFTMSAEWMPGQPRP++LD
Sbjct: 1   MASKALMSCGIAAVCPSVLSSSKSKFAAAVPFSAGATNATSRFTMSAEWMPGQPRPSYLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFDPLGLGEVP NLER+KESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           A+PGGQATYLG PVPWG LPTILAIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSK
Sbjct: 121 AIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DPKKFEELK+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGD++IP
Sbjct: 181 DPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240

Query: 241 RAL 244
           R +
Sbjct: 241 RGI 243

[Close]

BLAST of Spo16821.1 vs. NCBI nr
Match: gi|697111283|ref|XP_009609516.1| (PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic [Nicotiana tomentosiformis])

HSP 1 Score: 455.3 bits (1170), Expect = 6.700e-125
Identity = 215/243 (88.48%), Postives = 229/243 (94.24%), Query Frame = 1


		  
Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MAS ALMSCGIAAV PS LSSSKSKFA +VP+   + N +SRFTMSAEWMPGQPRP++LD
Sbjct: 1   MASKALMSCGIAAVCPSVLSSSKSKFAVAVPVSAGATNGTSRFTMSAEWMPGQPRPSYLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFDPLGLGEVP NLER+KESELIHCRWAMLAVPGI+VPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           A+PGGQATYLG PVPWG LPTILAIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSK
Sbjct: 121 AIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DPKKFEELK+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGD++IP
Sbjct: 181 DPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240

Query: 241 RAL 244
           R +
Sbjct: 241 RGI 243

[Close]

BLAST of Spo16821.1 vs. NCBI nr
Match: gi|698491972|ref|XP_009792367.1| (PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like [Nicotiana sylvestris])

HSP 1 Score: 454.5 bits (1168), Expect = 1.100e-124
Identity = 216/243 (88.89%), Postives = 229/243 (94.24%), Query Frame = 1


		  
Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MASNALMSCGIAAV PS LSSSKSKFA +VP+   + N +SRF+MSAEWMPGQPRP +LD
Sbjct: 1   MASNALMSCGIAAVSPSVLSSSKSKFAVAVPVCVGAANGNSRFSMSAEWMPGQPRPPYLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFDPLGLGEVP NLER+KESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           A+PGGQATYLG PVPWG LPTILAIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYSK
Sbjct: 121 AIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DPKKFEELK+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGD++IP
Sbjct: 181 DPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDVIIP 240

Query: 241 RAL 244
           R +
Sbjct: 241 RGI 243

[Close]

BLAST of Spo16821.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRT4_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea GN=SOVF_041770 PE=3 SV=1)

HSP 1 Score: 501.9 bits (1291), Expect = 4.400e-139
Identity = 243/243 (100.00%), Postives = 243/243 (100.00%), Query Frame = 1


		  
Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD
Sbjct: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK
Sbjct: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP
Sbjct: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240

Query: 241 RAL 244
           RAL
Sbjct: 241 RAL 243

[Close]

BLAST of Spo16821.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BGF2_BETVU (Chlorophyll a-b binding protein, chloroplastic OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g047600 PE=3 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 3.000e-132
Identity = 231/243 (95.06%), Postives = 236/243 (97.12%), Query Frame = 1


		  
Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MASNAL SCGIAAVFPSSLSSSKSKFAASVPL N+SCN SSRFTMSAEWMPGQPRP +LD
Sbjct: 1   MASNALTSCGIAAVFPSSLSSSKSKFAASVPLVNLSCNVSSRFTMSAEWMPGQPRPPYLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFDPL LGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK
Sbjct: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DPKKFEELK+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGDI+IP
Sbjct: 181 DPKKFEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDILIP 240

Query: 241 RAL 244
             L
Sbjct: 241 PTL 243

[Close]

BLAST of Spo16821.1 vs. UniProtKB/TrEMBL
Match: A0A164ZG13_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_019117 PE=4 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 1.400e-124
Identity = 215/244 (88.11%), Postives = 230/244 (94.26%), Query Frame = 1


		  
Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCN-ASSRFTMSAEWMPGQPRPAHL 60
           MA+ +LMSCG+AAV+PS LSSSKSKFAA++P+  VS N ASS+F+MSAEWMPGQPRPAHL
Sbjct: 1   MAAQSLMSCGVAAVYPSVLSSSKSKFAAALPMSMVSANGASSKFSMSAEWMPGQPRPAHL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGS PGDFGFDPLGL  VPEN ERFKESEL HCRWAMLAVPGILVPEALGLGNWV+AQEW
Sbjct: 61  DGSTPGDFGFDPLGLATVPENFERFKESELYHCRWAMLAVPGILVPEALGLGNWVQAQEW 120

Query: 121 AALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGNPVPWG LPTILAIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYS
Sbjct: 121 AAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDIEKKKYPGGAFDPLGYS 180

Query: 181 KDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVI 240
           KDPKKFEE+KLKE+KNGRLA+LAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGDIVI
Sbjct: 181 KDPKKFEEMKLKEVKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 240

Query: 241 PRAL 244
           PR L
Sbjct: 241 PRGL 244

[Close]

BLAST of Spo16821.1 vs. UniProtKB/TrEMBL
Match: A0A0U2SAF3_PANGI (Chlorophyll a-b binding protein, chloroplastic OS=Panax ginseng GN=CAB5 PE=2 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 1.500e-123
Identity = 213/244 (87.30%), Postives = 231/244 (94.67%), Query Frame = 1


		  
Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNAS-SRFTMSAEWMPGQPRPAHL 60
           MA+NALMSCGIAAVFPS LSSSKSKFAA++P   VS N + SR+TM+++WMPGQPRP +L
Sbjct: 1   MATNALMSCGIAAVFPSVLSSSKSKFAAALPQSLVSANGTTSRYTMTSDWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLGLG VPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWV+AQEW
Sbjct: 61  DGSAPGDFGFDPLGLGSVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVQAQEW 120

Query: 121 AALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLGNPVPWG LPTIL IEFL+IAFVEHQRSMEKDSEKKKYPGGAFDPLGYS
Sbjct: 121 AAIPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180

Query: 181 KDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVI 240
           KDPKKFEE K+KE+KNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIG+++I
Sbjct: 181 KDPKKFEEYKVKEVKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGNVLI 240

Query: 241 PRAL 244
           PR L
Sbjct: 241 PRGL 244

[Close]

BLAST of Spo16821.1 vs. UniProtKB/TrEMBL
Match: A0A0A0KNM4_CUCSA (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus GN=Csa_5G490820 PE=3 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 1.500e-123
Identity = 215/244 (88.11%), Postives = 226/244 (92.62%), Query Frame = 1


		  
Query: 1   MASNALMSCGIAAV-FPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHL 60
           MASN LMSCGIA   FPS LSSSKSKFA  VP+  V+ NASSRF+MSAEWMPGQPRP +L
Sbjct: 1   MASNTLMSCGIATTAFPSVLSSSKSKFAVGVPISGVAVNASSRFSMSAEWMPGQPRPPYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120

Query: 121 AALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180
           AA+PGGQATYLG PVPWG LPTIL IEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYS
Sbjct: 121 AAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVI 240
           KDP+K +E K+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGDI+I
Sbjct: 181 KDPEKLKEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIII 240

Query: 241 PRAL 244
           PR +
Sbjct: 241 PRTI 244

[Close]

BLAST of Spo16821.1 vs. ExPASy Swiss-Prot
Match: CAB6_ARATH (Chlorophyll a-b binding protein 6, chloroplastic OS=Arabidopsis thaliana GN=LHCA1 PE=1 SV=1)

HSP 1 Score: 437.2 bits (1123), Expect = 1.200e-121
Identity = 213/241 (88.38%), Postives = 222/241 (92.12%), Query Frame = 1


		  
Query: 1   MASNALMSCGIAAVFPSSLSSSKSKF-AASVPLGNVSCNASSRFTMSAEWMPGQPRPAHL 60
           MASN+LMSCGIAAV+PS LSSSKSKF +A VPL N       R  M+A WMPG+PRPA+L
Sbjct: 1   MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAG--NVGRIRMAAHWMPGEPRPAYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLGLGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 120

Query: 121 AALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180
           AALPGGQATYLGNPVPWG LPTILAIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYS
Sbjct: 121 AALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVI 240
           KDPKK EELK+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGDIVI
Sbjct: 181 KDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 239

[Close]

BLAST of Spo16821.1 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 2.000e-121
Identity = 207/243 (85.19%), Postives = 225/243 (92.59%), Query Frame = 1


		  
Query: 1   MASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLD 60
           MASN LMSCGI AV PS LSS+KSKFAA++P+   + N  SRF+MSA+WMPGQPRP++LD
Sbjct: 1   MASNTLMSCGIPAVCPSFLSSTKSKFAAAMPVYVGATNFMSRFSMSADWMPGQPRPSYLD 60

Query: 61  GSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWA 120
           GSAPGDFGFD LGLGEVP NLER+KESELIHCRWAMLAVPGI+VPEALGLGNWVKAQEWA
Sbjct: 61  GSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWA 120

Query: 121 ALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180
           A+PGGQATYLG PVPWG LPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK
Sbjct: 121 AIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSK 180

Query: 181 DPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIP 240
           DP KFEELK+KEIKNGRLALLA VGFC+QQSAY GTGPLENLATHLADPWHNNIGD++IP
Sbjct: 181 DPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIGDVIIP 240

Query: 241 RAL 244
           + +
Sbjct: 241 KGI 243

[Close]

BLAST of Spo16821.1 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 4.700e-110
Identity = 192/240 (80.00%), Postives = 205/240 (85.42%), Query Frame = 1


		  
Query: 2   ASNALMSCGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSAEWMPGQPRPAHLDG 61
           +S+ L SC    V PS L+ S     + +P    +   S R TMSAEW PGQPRPAHLDG
Sbjct: 3   SSSGLRSCSAVGV-PSLLAPSSRSGRSGLPFCAYA-TTSGRVTMSAEWFPGQPRPAHLDG 62

Query: 62  SAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAA 121
           S+PGDFGFDPLGL  VPEN ERFKESE+ HCRWAML VPG+LVPEALGLGNWVKAQEWAA
Sbjct: 63  SSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA 122

Query: 122 LPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKD 181
           LP GQATYLGNPVPWGNLPTILAIEFLAIAF E QR+MEKD EKKKYPGGAFDPLG+SKD
Sbjct: 123 LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKD 182

Query: 182 PKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVIPR 241
           P KFEELKLKEIKNGRLA+LAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGDIVIPR
Sbjct: 183 PAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVIPR 240

[Close]

BLAST of Spo16821.1 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.300e-40
Identity = 103/267 (38.58%), Postives = 140/267 (52.43%), Query Frame = 1


		  
Query: 17  SSLSSSKSKFAASVPLGNVSCNASSRFTMSAE---WMPGQPRPAHLDGSAPGDFGFDPLG 76
           S +SS+ S+F A    G    +     T+ ++   W PG   P +LDGS  GD+GFDP G
Sbjct: 20  SDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFG 79

Query: 77  LGEVPE-------------------------------------------NLERFKESELI 136
           LG+  E                                            L+RF+E ELI
Sbjct: 80  LGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELI 139

Query: 137 HCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGNLPTILAIEFLAI 196
           H RWAMLA  G +  E L    W  A +   + G  ++YLG P+P+ ++ T++ IE L I
Sbjct: 140 HGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVI 199

Query: 197 AFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPKKFEELKLKEIKNGRLALLAFVGFCIQ 237
            ++E QR+ E DSEK+ YPGG  FDPLG + DP K  +L+L EIK+ RLA++ F+GF +Q
Sbjct: 200 GYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQ 259

[Close]

BLAST of Spo16821.1 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.100e-37
Identity = 98/246 (39.84%), Postives = 132/246 (53.66%), Query Frame = 1


		  
Query: 9   CGIAAVFPSSLSSSKSKFAASVPLGNVSCNASSRFTMSA---EWMPGQPRPAHLDGSAPG 68
           CG+ + F   L  S  K    V    V C+ S+ F + A   EW+PG   P +L GS PG
Sbjct: 16  CGLKSRF---LGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPG 75

Query: 69  DFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGG 128
           D GFDPLGL E PENL  F ++EL++ RWAML V G+L+PE       +   +W A   G
Sbjct: 76  DNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYA--AG 135

Query: 129 QATYLGNPVPWGNLPTILAIEFLAIAFVEHQR--------SMEKDSEKKK---------Y 188
           +  Y      + +  T+  IEF+   +VE +R        S+ +D   K+         Y
Sbjct: 136 KEEY------FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGY 195

Query: 189 PGGAFDPLGYSKDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLAD 235
           PGG F+PL ++       E K KEI NGRLA+LAF+GF IQ +   G GP +NL  H++D
Sbjct: 196 PGGIFNPLNFAPT----LEAKEKEIANGRLAMLAFLGFIIQHNV-TGKGPFDNLLQHISD 245

[Close]

BLAST of Spo16821.1 vs. TAIR (Arabidopsis)
Match: AT3G54890.1 (photosystem I light harvesting complex gene 1)

HSP 1 Score: 437.2 bits (1123), Expect = 6.700e-123
Identity = 213/241 (88.38%), Postives = 222/241 (92.12%), Query Frame = 1


		  
Query: 1   MASNALMSCGIAAVFPSSLSSSKSKF-AASVPLGNVSCNASSRFTMSAEWMPGQPRPAHL 60
           MASN+LMSCGIAAV+PS LSSSKSKF +A VPL N       R  M+A WMPG+PRPA+L
Sbjct: 1   MASNSLMSCGIAAVYPSLLSSSKSKFVSAGVPLPNAG--NVGRIRMAAHWMPGEPRPAYL 60

Query: 61  DGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEW 120
           DGSAPGDFGFDPLGLGEVP NLER+KESELIHCRWAMLAVPGILVPEALG GNWVKAQEW
Sbjct: 61  DGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 120

Query: 121 AALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYS 180
           AALPGGQATYLGNPVPWG LPTILAIEFLAIAFVEHQRSMEKD EKKKYPGGAFDPLGYS
Sbjct: 121 AALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEKDPEKKKYPGGAFDPLGYS 180

Query: 181 KDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNIGDIVI 240
           KDPKK EELK+KEIKNGRLALLAFVGFC+QQSAYPGTGPLENLATHLADPWHNNIGDIVI
Sbjct: 181 KDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIGDIVI 239

[Close]

BLAST of Spo16821.1 vs. TAIR (Arabidopsis)
Match: AT3G08940.2 (light harvesting complex photosystem II)

HSP 1 Score: 167.9 bits (424), Expect = 7.600e-42
Identity = 103/267 (38.58%), Postives = 140/267 (52.43%), Query Frame = 1


		  
Query: 17  SSLSSSKSKFAASVPLGNVSCNASSRFTMSAE---WMPGQPRPAHLDGSAPGDFGFDPLG 76
           S +SS+ S+F A    G    +     T+ ++   W PG   P +LDGS  GD+GFDP G
Sbjct: 20  SDISSNSSRFTARFGFGTKKASPKKAKTVISDRPLWFPGAKSPEYLDGSLVGDYGFDPFG 79

Query: 77  LGEVPE-------------------------------------------NLERFKESELI 136
           LG+  E                                            L+RF+E ELI
Sbjct: 80  LGKPAEYLQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELI 139

Query: 137 HCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLGNPVPWGNLPTILAIEFLAI 196
           H RWAMLA  G +  E L    W  A +   + G  ++YLG P+P+ ++ T++ IE L I
Sbjct: 140 HGRWAMLATLGAITVEWLTGVTWQDAGKVELVDG--SSYLGQPLPF-SISTLIWIEVLVI 199

Query: 197 AFVEHQRSMEKDSEKKKYPGGA-FDPLGYSKDPKKFEELKLKEIKNGRLALLAFVGFCIQ 237
            ++E QR+ E DSEK+ YPGG  FDPLG + DP K  +L+L EIK+ RLA++ F+GF +Q
Sbjct: 200 GYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQ 259

[Close]

BLAST of Spo16821.1 vs. TAIR (Arabidopsis)
Match: AT4G10340.1 (light harvesting complex of photosystem II 5)

HSP 1 Score: 154.5 bits (389), Expect = 8.600e-38
Identity = 83/191 (43.46%), Postives = 113/191 (59.16%), Query Frame = 1


		  
Query: 56  PAHLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGL--GNW 115
           P +L+G   GD+G+DP GLG+ PEN  +++  ELIH RWAML   G ++PEAL     N 
Sbjct: 82  PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANC 141

Query: 116 VKAQEW-----AALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQR-SMEKDSEKKK 175
                W       L G    Y G  +P  NL   +  E + +   E+ R +   D E K 
Sbjct: 142 GPEAVWFKTGALLLDGNTLNYFGKNIPI-NLVLAVVAEVVLLGGAEYYRITNGLDFEDKL 201

Query: 176 YPGGAFDPLGYSKDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLA 235
           +PGG FDPLG +KDP++   LK+KEIKNGRLA+ A +GF I Q+   G GP+ENLA HL+
Sbjct: 202 HPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFI-QAYVTGEGPVENLAKHLS 261

Query: 236 DPWHNNIGDIV 239
           DP+ NN+  ++
Sbjct: 262 DPFGNNLLTVI 270

[Close]

BLAST of Spo16821.1 vs. TAIR (Arabidopsis)
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4)

HSP 1 Score: 150.2 bits (378), Expect = 1.600e-36
Identity = 92/240 (38.33%), Postives = 130/240 (54.17%), Query Frame = 1


		  
Query: 16  PSSLSSSKSKFAASVPLGNVSCNA-SSRFTMSA---EWMPGQPRPAHLDGSAPGDFGFDP 75
           P  L+ S  +    +   ++  +A +S F + A   EW+PG   P +L GS  GD GFDP
Sbjct: 20  PRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDP 79

Query: 76  LGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAALPGGQATYLG 135
           LGL E PENL+ F ++EL++ RWAML V G+L+PE       +   EW     G+  Y  
Sbjct: 80  LGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEW--YDAGKEQY-- 139

Query: 136 NPVPWGNLPTILAIEFLAIAFVEHQR--------SMEKDSEKKK---------YPGGAFD 195
               + +  T+  IEF+   +VE +R        S+ +D   K+         YPGG F+
Sbjct: 140 ----FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFN 199

Query: 196 PLGYSKDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPGTGPLENLATHLADPWHNNI 235
           PL ++      +E K KE+ NGRLA+LAF+GF +Q +   G GP ENL  HL+DPWHN I
Sbjct: 200 PLNFAPT----QEAKEKELANGRLAMLAFLGFVVQHNV-TGKGPFENLLQHLSDPWHNTI 246

[Close]

BLAST of Spo16821.1 vs. TAIR (Arabidopsis)
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2)

HSP 1 Score: 149.1 bits (375), Expect = 3.600e-36
Identity = 101/266 (37.97%), Postives = 135/266 (50.75%), Query Frame = 1


		  
Query: 1   MASNALMSCGIAAVF-PSSLSSSKSKFAASVPLGNVSCNASSRFTMSAE-----WMPGQP 60
           MAS+   S  IAA+  PS L   K +    + +  VS   +S   ++A+     W PG  
Sbjct: 1   MASSLCASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFPGST 60

Query: 61  RPAHLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWV 120
            P  LDGS PGDFGFDPLGL   P++L+   ++E++HCRWAML   GI +PE L     +
Sbjct: 61  PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGIL 120

Query: 121 KAQEWAALPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQR--------SMEKD---- 180
               W     G+  Y  +        T+  +E + I + E +R        S+  D    
Sbjct: 121 NTPSW--YTAGEQEYFTDKT------TLFVVELILIGWAEGRRWADIIKPGSVNTDPVFP 180

Query: 181 -----SEKKKYPGGA-FDPLGY-SKDPKKFEELKLKEIKNGRLALLAFVGFCIQQSAYPG 240
                     YPGG  FDPLG+ S  P K +EL+ KEIKNGRLA+LA +G   Q   Y G
Sbjct: 181 NNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQH-IYTG 240

Query: 241 TGPLENLATHLADPWHNNIGDIVIPR 242
           TGP++NL  HLADP H  I     P+
Sbjct: 241 TGPIDNLFAHLADPGHATIFAAFTPK 257

The following BLAST results are available for this feature:

BLAST of Spo16821.1 vs. NCBI nr
BLAST of Spo16821.1 vs. UniProtKB/TrEMBL
BLAST of Spo16821.1 vs. ExPASy Swiss-Prot
BLAST of Spo16821.1 vs. TAIR (Arabidopsis)

BLAST of Spo16821.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902229792\|gb\|KNA21599.1\|	6.3e-139	100.	hypothetical protein SOVF_0417...	[more]
gi\|731363359\|ref\|XP_010693392.1\|	4.3e-132	95.0	PREDICTED: chlorophyll a-b bin...	[more]
gi\|698553114\|ref\|XP_009769851.1\|	6.1e-126	89.7	PREDICTED: chlorophyll a-b bin...	[more]
gi\|697111283\|ref\|XP_009609516.1\|	6.7e-125	88.4	PREDICTED: chlorophyll a-b bin...	[more]
gi\|698491972\|ref\|XP_009792367.1\|	1.1e-124	88.8	PREDICTED: chlorophyll a-b bin...	[more]

BLAST of Spo16821.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RRT4_SPIOL	4.4e-139	100.	Chlorophyll a-b binding protei...	[more]
A0A0J8BGF2_BETVU	3.0e-132	95.0	Chlorophyll a-b binding protei...	[more]
A0A164ZG13_DAUCA	1.4e-124	88.1	Uncharacterized protein OS=Dau...	[more]
A0A0U2SAF3_PANGI	1.5e-123	87.3	Chlorophyll a-b binding protei...	[more]
A0A0A0KNM4_CUCSA	1.5e-123	88.1	Chlorophyll a-b binding protei...	[more]

BLAST of Spo16821.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
CAB6_ARATH	1.2e-121	88.3	Chlorophyll a-b binding protei...	[more]
CB11_SOLLC	2.0e-121	85.1	Chlorophyll a-b binding protei...	[more]
CB121_HORVU	4.7e-110	80.0	Chlorophyll a-b binding protei...	[more]
CB4B_ARATH	1.3e-40	38.5	Chlorophyll a-b binding protei...	[more]
CB24_PEA	1.1e-37	39.8	Chlorophyll a-b binding protei...	[more]

BLAST of Spo16821.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G54890.1	6.7e-123	88.3	photosystem I light harvesting...	[more]
AT3G08940.2	7.6e-42	38.5	light harvesting complex photo...	[more]
AT4G10340.1	8.6e-38	43.4	light harvesting complex of ph...	[more]
AT3G47470.1	1.6e-36	38.3	light-harvesting chlorophyll-p...	[more]
AT3G61470.1	3.6e-36	37.9	photosystem I light harvesting...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..241 score: 1.3E
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 56..210 score: 1.0
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	1.10.3460.10		coord: 48..235 score: 6.0
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 39..239 score: 1.57
None	No IPR available	PANTHER	PTHR21649:SF7	CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTIC	coord: 1..241 score: 1.3E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0009744	response to sucrose
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0016020	membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0010287	plastoglobule
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding