Spo16738.1 (mRNA)

Overview
NameSpo16738.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_153 : 292109 .. 294726 (-)
Sequence length489
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCTGTAAGTCGATCCAGGGCAAGTTTTCGGATCTATTATGACATAGACGTGTGGCTCTCAACAAACCTTTTTTTTATTCAAAGCCCTTTTTAGGTTTTTTAAAATAAAAATGATTTTTTTTTGTGCAACTTAGATTTAGTATTTTAGAATAATAAATAATATTTCTATCTATTATTGATTATTCTAAAATATATATTTTTTATTTAAAATAGTAATTTATTTATTTGTATTAATAGCTAATAGACGAAAAGAAATAAATCTATTCTATATTCTAGCTCTGTATTCTTTATCCCTACGAAATACCAGACAAATCAGAATGATTTGAGAACGAATAGAAGAATTTTTTTAATTGGTTGTTCTTTCTCGAAGAATGATTCCATTTTATTTGACTAATAGACCAAAAAGAAAAAGAATTATAAAAAATAACAATTTTTTCTTTTATTCGAAACGCCACGTGATCTTCAACCAACTATGCGCTTCAATATAATTCCCAGGAGTAAGCATTAGAGCATGTTTCCAATACTCAGTGGCTTAATCGAACCAAGTCTCCGCAATTTCAGAATCTCCCTGTAGAATGGCTTTTTCTCCCCCCGTCGGAATAGGAATAAGGTCAATTCCTTCCCTTAGAACCGTACTTGAGAGTTTCCTACCTCATACGGCTTCGCAACCAATTCTTTATGGTGTCCTATTAAACCGAATGCGATTTCTTTTTGTTCATAGATTTCTGATTTTTATTCTACTGTTCGGAGGAACCAAAAGAGGTTAATCAGATGAGTTTCAAACTTTCATTTTGATTTAATTAAAAATAAGTTTCAGTTTTATCTTTTCTCCCACCTGCAAAAGAAGAAAGCACAAGTATTTACCCCTATCCTTCATATTTTCCGCAAGGTAACTATCTCGGTTTCATATCGAGATTTATATAGAATCTTTGAAAAAGGCTTTCCTTCATAAGTAAGAAAGAAAAGACTTACTATCTTTGGGATTTGATCCTACACCGCCGCTCAATACCTTAGTCTTAGTCAGGGGCTGAACCAGAAACTATATATATGGGGGGTCGAAACTTAACTTATAATTATTTTAACAATGAAAAACAAAAATAAAATAAAAAACTAAAGGAGTCAAGATTCGAACCTTGTACCTCCAACAACCTCTATATTTTAAGGTAAAATAACCATGACACATGTGTTATTCTAATTAGGGCTGGCAAAAGCTGACCCGACCTGATAACCCGACCCGAACTGAAAATAGCGGGTTTGGGTTGAGATTTTCAACCCGATTAATTAAATGGGTCGACACGAACCCGACCTGAAGTTAAATGGGTTAGGTTTGGGTTAAAAATCTCAACCCGAAATCAACCTGTGTAACCCGATTATTTATATGGGTCAAAATCAGGTCGGGTCAACCCGACCTGATAACCTGGAAAAAGTATAATAATAATAAAAAAAAAGGTTTAAAACAAAATTTAGTGTAGAAAGAACGAAATTTTTGTTAAAACAAAAAAAAGAATACAGCGCAGCTCCTTTGATGCAATAATGGGCCAAGCCCAAAATTACTTTCCTTTACACTAAATTATGATGCACTACAAACTTACTAACCCTAATTGCACTCTCAGACTCTCTCAGACTCTCTCTCTCTCTCTCTCTCTCTAAAAACATAAGCGCCGCTTCCCGGTTCTTCTCAATCTCTCATCCTCTGCTCAACGGCTCAATTCTTCGGTTCCTCTTCATTCACTCGGTAATGTTCTTCACTCTTTATTCATTTGCTGTGTTCTTTCTCTGATTTATGCTATTTTTTTTTCGATTTTTATATGCTAATTTATGCTACTTTTTTTTATATTCGATTTTGTATATGTTGATATTTTCGATTTTGTTTTTCTCGATTTTATTTATGCTAATGTTTTATATTTTTTCGATTTTATTCTCGATTTATGTTCAAGAATGATATATGTCTTTATTTTAATTTATACATCATTATATGTTAATTCTAGTATACTTTGAGGATTTGCATATCTATTTTATTTATTTGAAGAGTAATGCATGGTTTTGCATCTTAAAATCAACAGTTTTTTTGGATTATTAATTGACTTTAGAGTAATTTTCTTGATTTGAATGTTTATGTAAGTATATTTTCGTCGATTTGTATGATTTTATGAATGAATAATTTCGTGGATTTGTATTTCCCCGATCTAATTTTTGTTTCCGTTTTATTTATAAAAATGCTAATATTATTATCTTTTGTTATGTTCTGTGTGCAGGTGTATTTATTCAACGAAATTTTGGCATCCCGTTATCACAAAGCTACGAATGGAGGATGCAACACACTACATTTTAGATTTTTAGATATTTTTCTTACTATTTAAGTTTTAATTGATTGTTTGATTTTGTTGTAATATAATTTTAATATTTAATCCTGCACTTTTGTTTTGGTTTTATGTTGATGTTAAACACCATCGTTATTTCCAGATCTAATGAAAAAAGCTTGATTAATATTCTTGTATCGAAACAAGCAGGTTAAATATGTTAAATGGGTTCGGGTTGACCCAAAATAAGCAAGTTAAATGGGTTAAGCTATTTGTAAAAATTCAAGTGAAAATAAATCAGGTTGAGCAGATCAG

mRNA sequence

ATGATCTACTCTCTCAGACTCTCTCTCTCTCTCTCTCTCTCTAAAAACATAAGCGCCGCTTCCCGGTTCTTCTCAATCTCTCATCCTCTGCTCAACGGCTCAATTCTTCGGTTCCTCTTCATTCACTCGGTGTATTTATTCAACGAAATTTTGGCATCCCGTTATCACAAAGCTACGAATGGAGGATGCAACACACTACATTTTAGATTTTTAGATATTTTTCTTACTATTTAAGTTTTAATTGATTGTTTGATTTTGTTGTAATATAATTTTAATATTTAATCCTGCACTTTTGTTTTGGTTTTATGTTGATGTTAAACACCATCGTTATTTCCAGATCTAATGAAAAAAGCTTGATTAATATTCTTGTATCGAAACAAGCAGGTTAAATATGTTAAATGGGTTCGGGTTGACCCAAAATAAGCAAGTTAAATGGGTTAAGCTATTTGTAAAAATTCAAGTGAAAATAAATCAGGTTGAGCAGATCAG

Coding sequence (CDS)

ATGATCTACTCTCTCAGACTCTCTCTCTCTCTCTCTCTCTCTAAAAACATAAGCGCCGCTTCCCGGTTCTTCTCAATCTCTCATCCTCTGCTCAACGGCTCAATTCTTCGGTTCCTCTTCATTCACTCGGTGTATTTATTCAACGAAATTTTGGCATCCCGTTATCACAAAGCTACGAATGGAGGATGCAACACACTACATTTTAGATTTTTAGATATTTTTCTTACTATTTAA

Protein sequence

MIYSLRLSLSLSLSKNISAASRFFSISHPLLNGSILRFLFIHSVYLFNEILASRYHKATNGGCNTLHFRFLDIFLTI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo16738Spo16738gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo16738.1Spo16738.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16738.1.CDS.3Spo16738.1.CDS.3CDS
Spo16738.1.CDS.2Spo16738.1.CDS.2CDS
Spo16738.1.CDS.1Spo16738.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16738.1.utr3p.1Spo16738.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16738.1.exon.3Spo16738.1.exon.3exon
Spo16738.1.exon.2Spo16738.1.exon.2exon
Spo16738.1.exon.1Spo16738.1.exon.1exon


Homology
[Close]
BLAST of Spo16738.1 vs. NCBI nr
Match: gi|902182199|gb|KNA09884.1| (hypothetical protein SOVF_149450, partial [Spinacia oleracea])

HSP 1 Score: 137.9 bits (346), Expect = 7.500e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

		  

Query: 8  SLSLSLSKNISAASRFFSISHPLLNGSILRFLFIHSVYLFNEILASRYHKATNGGCNTLH 67
          SLSLSLSKNISAASRFFSISHPLLNGSILRFLFIHSVYLFNEILASRYHKATNGGCNTLH
Sbjct: 5  SLSLSLSKNISAASRFFSISHPLLNGSILRFLFIHSVYLFNEILASRYHKATNGGCNTLH 64

Query: 68 FRFLDIFLTI 78
          FRFLDIFLTI
Sbjct: 65 FRFLDIFLTI 74
[Close]
BLAST of Spo16738.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QRE9_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_149450 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 5.200e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 1 

		  

Query: 8  SLSLSLSKNISAASRFFSISHPLLNGSILRFLFIHSVYLFNEILASRYHKATNGGCNTLH 67
          SLSLSLSKNISAASRFFSISHPLLNGSILRFLFIHSVYLFNEILASRYHKATNGGCNTLH
Sbjct: 5  SLSLSLSKNISAASRFFSISHPLLNGSILRFLFIHSVYLFNEILASRYHKATNGGCNTLH 64

Query: 68 FRFLDIFLTI 78
          FRFLDIFLTI
Sbjct: 65 FRFLDIFLTI 74
The following BLAST results are available for this feature:
BLAST of Spo16738.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902182199|gb|KNA09884.1|7.5e-30100.hypothetical protein SOVF_1494... [more]
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BLAST of Spo16738.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QRE9_SPIOL5.2e-30100.Uncharacterized protein (Fragm... [more]
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BLAST of Spo16738.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16738.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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