Spo16716.1 (mRNA) | SpinachBase

Overview


Name	Spo16716.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr5 : 58845750 .. 58846199 (-)
Sequence length	450

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTATAACACTAAGACTCAAGTTTTCTTCTTATTGTCCCTCTTGGTTGCCACTTGTATGGCCCAAGCACCATCACCCACCCCCGTCGCCGCCCCCGTTGCACCACCAACCGCCACCACCCCTGCACCCGCTCCTACCACCACCACTCCCGCTCCCGTCGCACCACCAACTGCCACCCCAACTCAAGCCCCAGTTGCCACCCCAACCGCCACCCCAACTGCCGCCCCAACCCCTTCACCAACCACCGCCACTGGCCCCGCCGCTTTCGTCCCAGCTCCTACTCCCGCCGCTGACGGCCCAAGTGCTGGTGGTCCCTCCGCTGACGGACCAGGTGCTGGTGGTCCCTCAGCTGATACCCCAGCTAGTGACACCCCTAACTCCGCCGGAAGGTCCGCCGTTGCAGGCGCCATGATCTTTGGTGGGTTCGTTGCTGCTTTGATGGTGTAA

mRNA sequence

ATGGCGTATAACACTAAGACTCAAGTTTTCTTCTTATTGTCCCTCTTGGTTGCCACTTGTATGGCCCAAGCACCATCACCCACCCCCGTCGCCGCCCCCGTTGCACCACCAACCGCCACCACCCCTGCACCCGCTCCTACCACCACCACTCCCGCTCCCGTCGCACCACCAACTGCCACCCCAACTCAAGCCCCAGTTGCCACCCCAACCGCCACCCCAACTGCCGCCCCAACCCCTTCACCAACCACCGCCACTGGCCCCGCCGCTTTCGTCCCAGCTCCTACTCCCGCCGCTGACGGCCCAAGTGCTGGTGGTCCCTCCGCTGACGGACCAGGTGCTGGTGGTCCCTCAGCTGATACCCCAGCTAGTGACACCCCTAACTCCGCCGGAAGGTCCGCCGTTGCAGGCGCCATGATCTTTGGTGGGTTCGTTGCTGCTTTGATGGTGTAA

Coding sequence (CDS)

ATGGCGTATAACACTAAGACTCAAGTTTTCTTCTTATTGTCCCTCTTGGTTGCCACTTGTATGGCCCAAGCACCATCACCCACCCCCGTCGCCGCCCCCGTTGCACCACCAACCGCCACCACCCCTGCACCCGCTCCTACCACCACCACTCCCGCTCCCGTCGCACCACCAACTGCCACCCCAACTCAAGCCCCAGTTGCCACCCCAACCGCCACCCCAACTGCCGCCCCAACCCCTTCACCAACCACCGCCACTGGCCCCGCCGCTTTCGTCCCAGCTCCTACTCCCGCCGCTGACGGCCCAAGTGCTGGTGGTCCCTCCGCTGACGGACCAGGTGCTGGTGGTCCCTCAGCTGATACCCCAGCTAGTGACACCCCTAACTCCGCCGGAAGGTCCGCCGTTGCAGGCGCCATGATCTTTGGTGGGTTCGTTGCTGCTTTGATGGTGTAA

Protein sequence

MAYNTKTQVFFLLSLLVATCMAQAPSPTPVAAPVAPPTATTPAPAPTTTTPAPVAPPTATPTQAPVATPTATPTAAPTPSPTTATGPAAFVPAPTPAADGPSAGGPSADGPGAGGPSADTPASDTPNSAGRSAVAGAMIFGGFVAALMV

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo16716	Spo16716	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo16716.1	Spo16716.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16716.1.CDS.1	Spo16716.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16716.1.exon.1	Spo16716.1.exon.1	exon

Homology

[Close]

BLAST of Spo16716.1 vs. NCBI nr
Match: gi|902152973|gb|KNA05653.1| (hypothetical protein SOVF_188350 [Spinacia oleracea])

HSP 1 Score: 245.0 bits (624), Expect = 8.500e-62
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1


		  
Query: 1   MAYNTKTQVFFLLSLLVATCMAQAPSPTPVAAPVAPPTATTPAPAPTTTTPAPVAPPTAT 60
           MAYNTKTQVFFLLSLLVATCMAQAPSPTPVAAPVAPPTATTPAPAPTTTTPAPVAPPTAT
Sbjct: 1   MAYNTKTQVFFLLSLLVATCMAQAPSPTPVAAPVAPPTATTPAPAPTTTTPAPVAPPTAT 60

Query: 61  PTQAPVATPTATPTAAPTPSPTTATGPAAFVPAPTPAADGPSAGGPSADGPGAGGPSADT 120
           PTQAPVATPTATPTAAPTPSPTTATGPAAFVPAPTPAADGPSAGGPSADGPGAGGPSADT
Sbjct: 61  PTQAPVATPTATPTAAPTPSPTTATGPAAFVPAPTPAADGPSAGGPSADGPGAGGPSADT 120

Query: 121 PASDTPNSAGRSAVAGAMIFGGFVAALMV 150
           PASDTPNSAGRSAVAGAMIFGGFVAALMV
Sbjct: 121 PASDTPNSAGRSAVAGAMIFGGFVAALMV 149

[Close]

BLAST of Spo16716.1 vs. NCBI nr
Match: gi|731339780|ref|XP_010681040.1| (PREDICTED: classical arabinogalactan protein 9-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 152.5 bits (384), Expect = 5.700e-34
Identity = 116/151 (76.82%), Postives = 123/151 (81.46%), Query Frame = 1


		  
Query: 1   MAYNTKTQVFFLLSLLVATCMAQAPSPTPVAAPVAPPTATTPAPAPTTTTPAPVAPPTAT 60
           MAY TKTQVFFLLSLLVATCMAQAP+PTPV  P APPTAT PAPAP    P PVAPPTAT
Sbjct: 1   MAY-TKTQVFFLLSLLVATCMAQAPAPTPVVTP-APPTAT-PAPAPL--APTPVAPPTAT 60

Query: 61  PTQAPVATPTATPTAAPTPSPTTATGPAAFVPAPTPAADGPSAGGPSADGPGAGGPSADT 120
           PT +PVATP A PTA P+P+PTTATGPAAFVPA  PAAD PSA  PSA  P A GP AD+
Sbjct: 61  PTPSPVATPVAPPTATPSPAPTTATGPAAFVPASAPAADVPSASVPSALTP-AAGPGADS 120

Query: 121 PASDTP--NSAGRSAVAGAMIFGGFVAALMV 150
           P SD P  NSAGRSAVAGA++FGGFVAALMV
Sbjct: 121 PVSDNPAGNSAGRSAVAGAVLFGGFVAALMV 145

[Close]

BLAST of Spo16716.1 vs. NCBI nr
Match: gi|658017040|ref|XP_008343878.1| (PREDICTED: lysine-rich arabinogalactan protein 19-like [Malus domestica])

HSP 1 Score: 63.5 bits (153), Expect = 3.500e-7
Identity = 66/141 (46.81%), Postives = 86/141 (60.99%), Query Frame = 1


		  
Query: 8   QVFFLLSLLVATCMAQAPSPTPVAAPVAPPTATTPAPAPTTTTPAPVAPPTATPTQA-PV 67
           QV  +LSLL  +C+AQAP   P A+P   PTAT P   P T TP    PPTATP  A PV
Sbjct: 9   QVLMVLSLLATSCIAQAPGAAPTASP---PTATPPTATPPTATPPTATPPTATPPSAVPV 68

Query: 68  ATPTATPTAAPTPSPTTATGPAAFVPAPTPAADGPSAGGPSADGPGAGGPSADTPASDTP 127
            +P+ TPT +PTPSP TA  P+A  PA TPA+  PSA  PS+  P   GPS ++P ++  
Sbjct: 69  PSPSKTPTVSPTPSPVTAPTPSASPPASTPAST-PSAESPSSP-PAPSGPSPNSPPAEAL 128

Query: 128 NSAGRSAVAGAMIFGGFVAAL 148
             +G S ++ A+I G  +A +
Sbjct: 129 PPSGTSTISRAVIAGTALAGV 144

[Close]

BLAST of Spo16716.1 vs. NCBI nr
Match: gi|645219368|ref|XP_008235381.1| (PREDICTED: classical arabinogalactan protein 4-like [Prunus mume])

HSP 1 Score: 60.5 bits (145), Expect = 3.000e-6
Identity = 66/150 (44.00%), Postives = 82/150 (54.67%), Query Frame = 1


		  
Query: 8   QVFFLLSLLVATCMAQAPSPTPVAAPVAPPTATTPAPAPTTTTPAPVAPPTATPTQAPVA 67
           QV  +L LL  +C+AQAPSP P A P   PTAT P   P T TP     PTATP   P A
Sbjct: 9   QVLLVLGLLATSCIAQAPSPAPTATP---PTATPPTAKPPTATP-----PTATP---PSA 68

Query: 68  TPTATPTAAPTPSPTTATGPAAFVPAPTPAADGPSAGGPSADGPGAGGPS---ADTPASD 127
            P   PT +PTPSPT A  P+   PA +P+A+ PS+  P A    AG PS   ADTP+  
Sbjct: 69  APVPAPTTSPTPSPTKAPAPSTTAPASSPSAETPSSTSPPAPSGPAGSPSSPTADTPSPP 128

Query: 128 TPNS------AGRSAVAGAMIFGGFVAALM 149
            P+       A R+A+AG  + G   A ++
Sbjct: 129 PPSGNYAPGLASRAAIAGTALAGALFAVVL 147

[Close]

BLAST of Spo16716.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QG65_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_188350 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 5.900e-62
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 1


		  
Query: 1   MAYNTKTQVFFLLSLLVATCMAQAPSPTPVAAPVAPPTATTPAPAPTTTTPAPVAPPTAT 60
           MAYNTKTQVFFLLSLLVATCMAQAPSPTPVAAPVAPPTATTPAPAPTTTTPAPVAPPTAT
Sbjct: 1   MAYNTKTQVFFLLSLLVATCMAQAPSPTPVAAPVAPPTATTPAPAPTTTTPAPVAPPTAT 60

Query: 61  PTQAPVATPTATPTAAPTPSPTTATGPAAFVPAPTPAADGPSAGGPSADGPGAGGPSADT 120
           PTQAPVATPTATPTAAPTPSPTTATGPAAFVPAPTPAADGPSAGGPSADGPGAGGPSADT
Sbjct: 61  PTQAPVATPTATPTAAPTPSPTTATGPAAFVPAPTPAADGPSAGGPSADGPGAGGPSADT 120

Query: 121 PASDTPNSAGRSAVAGAMIFGGFVAALMV 150
           PASDTPNSAGRSAVAGAMIFGGFVAALMV
Sbjct: 121 PASDTPNSAGRSAVAGAMIFGGFVAALMV 149

[Close]

BLAST of Spo16716.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4A4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g138920 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.000e-34
Identity = 116/151 (76.82%), Postives = 123/151 (81.46%), Query Frame = 1


		  
Query: 1   MAYNTKTQVFFLLSLLVATCMAQAPSPTPVAAPVAPPTATTPAPAPTTTTPAPVAPPTAT 60
           MAY TKTQVFFLLSLLVATCMAQAP+PTPV  P APPTAT PAPAP    P PVAPPTAT
Sbjct: 1   MAY-TKTQVFFLLSLLVATCMAQAPAPTPVVTP-APPTAT-PAPAPL--APTPVAPPTAT 60

Query: 61  PTQAPVATPTATPTAAPTPSPTTATGPAAFVPAPTPAADGPSAGGPSADGPGAGGPSADT 120
           PT +PVATP A PTA P+P+PTTATGPAAFVPA  PAAD PSA  PSA  P A GP AD+
Sbjct: 61  PTPSPVATPVAPPTATPSPAPTTATGPAAFVPASAPAADVPSASVPSALTP-AAGPGADS 120

Query: 121 PASDTP--NSAGRSAVAGAMIFGGFVAALMV 150
           P SD P  NSAGRSAVAGA++FGGFVAALMV
Sbjct: 121 PVSDNPAGNSAGRSAVAGAVLFGGFVAALMV 145

The following BLAST results are available for this feature:

BLAST of Spo16716.1 vs. NCBI nr
BLAST of Spo16716.1 vs. UniProtKB/TrEMBL
BLAST of Spo16716.1 vs. ExPASy Swiss-Prot
BLAST of Spo16716.1 vs. TAIR (Arabidopsis)

BLAST of Spo16716.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4


Match Name	E-value	Identity	Description
gi\|902152973\|gb\|KNA05653.1\|	8.5e-62	100.	hypothetical protein SOVF_1883...	[more]
gi\|731339780\|ref\|XP_010681040.1\|	5.7e-34	76.8	PREDICTED: classical arabinoga...	[more]
gi\|658017040\|ref\|XP_008343878.1\|	3.5e-7	46.8	PREDICTED: lysine-rich arabino...	[more]
gi\|645219368\|ref\|XP_008235381.1\|	3.0e-6	44.0	PREDICTED: classical arabinoga...	[more]

BLAST of Spo16716.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2


Match Name	E-value	Identity	Description
A0A0K9QG65_SPIOL	5.9e-62	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C4A4_BETVU	4.0e-34	76.8	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo16716.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo16716.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 22..38 score: 3.6E-9coord: 81..97 score: 3.6E-9coord: 44..56 score: 3.6E-9coord: 57..78 score: 3.