Spo16641.1 (mRNA) | SpinachBase

Overview


Name	Spo16641.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	BnaC01g20550D protein
Location	Super_scaffold_164 : 20341 .. 26802 (+)
Sequence length	1003

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAATTATGCCCTTTTGCCTCAACCACAACAACAAAATAGAACGAGAGGAAGAGGGAGAAAGAGCGTGGGAAATCATAGCTTGAAAATGGCAGCCTCAGCTCTTCCAATCACTGGATGCATTATCCCCTCCACCCCGCGTCAATCCTTCTTCACGCAACGTCCTGCTTCTATTTTGCAGTAAGTTCACACTATTTTCACTTCTATTTCTTCCTTCATTATTATCATGTTTCTATGTTCTCAATTCTCCAAATTTATGCCAATTTTTCTGGGTAATTGCCTAATATAATGTTCGATATGATTCAGGGGGGGAATAATTCATACCCTTTTTGAACTTTTCCCGAATTCAAAATTAGATGGAAATTGGAATGATCTACTTAGTTTGAGAAGCCCCAATTCTGGATTACTGCAAATACTTGGAAGTCGTATTTTTTAAAGTTGTACCATGATTATCTGTTTTATCTTTTAGTAGTAAACCCTTACCCCATGATTTATTGTCAGGGATGAAGGAGAAAACTAAGAGTAATTGTGCTGTAAATTGAGTTAGCATCAATTGAGGTTAGTTTTGGAGTTGGGTTTGTTAGATAAAAGACTGTCACTCCATGAAAAACATTAGAAATTTTGAATAGAGCATTTGTATCGAGCTCGGTTTGCACATGCTTGATCACTTGGTTTATTGTTATTGTGCAAGTGAGGTTCGAATGTCTATCCAATTATCCGGATGCCACTCATACTATTTTTTGGGATTGGGAGAGTGATATTACATTTGGTTTCTTAATATAACAACCACCCGGCATAGAATGTGTTGACAGAGTTCTATCTATTCACCTGATTTTCACTTTTTCTGAATTGATCTTATCTGAACTTAATTAAACTTATCTGGACTTATTAGAACTTATCAAAACTTATTTTGGTTATAAATTGTATTTGGTCAACACTTATTTTTCGTGAACTTATCTTATCTAAACTTAACTGAACCATCATGACACAATAAGACACAATAAGAAACAGTAAGTTAGTATACCGATCAGGTAGTGGTTTACCCAAGAACATCTTGTCATGATGGTATTTTTATTTTCCTATTGGACCCTAAATCAAAATGGCTCTTAAAACCTCTTCGCTTCTTTTCCATGAAGTAGAAGATAGTCGTCCCGTTATTGCTTTTGGGTCAATTGGAAACAACCTATCTGCAATTGCAGGGGTAAGGTTGCGTACACCCGACCCCCCCTTACCCCGCTTCTTGCGGGAGCCTTTTTGAGGCAATGGGGTAATGATAATGATAATGATAATGATGATGACCCTAATTGAACGAATTTGATTTAGCACCAATGAATTTCCATCACGAAGCTGATTTGGCAGTATAGTAGCTTGCTAATGAAGCGAATTGTATAGGAATTCTGATAAATTTTTACTTCTATTTCACTAGTTTGGCAACTGCGCTCATCGTCCGTGACTGAGAATAAACCATTTGACATTACTTCATGAATTTGGAGCAAGGTTGCACACTTGCATTTATTTAGAATTTCTCTAAAATTATAGAGAATCGCAGAACTATCCCTTCTGAAACTAAAGTCCAAAATACCATTGACCTGGTTAGCTATAGACCTAGAGTGCAACTTTAGCAAGTGATAAGTATTGAGAAACATTCATTTAATAGTTGCAAGATCTTCTCTGTTGTGATAAACAAATGGCGAGGGGGGTAATGGCCATATATAATAAGGTGATGGTGATATGGAAAAGAACAGCAAGAAAGACATAGACATAGAAACTTCCAAGCTAACACAGCCTACTAAAACTTAATGAAGTTGTTTTCTAAGAGTCCAAGACCGGCATTTTTTACTGCATGCAGCATAGGTGTAGGCGTGTAACCACTAGATTCTCAGATCAGCTGTGTTTTAATTAGTAAATAAGGTACTAGTATTACCTTTCAAGTCCCACTCTCTAAACAACTTCGGGTCAACTCCTTTCTTGGCCACTTTTTCTTATCCTTTAGAAATTGGCAAATAGGTTTTGTCCTCAACCCTGTGTCATACTGGATTTAATATTCTTGTGATAGAAATTAGAAACACTGCTTAAAAAAGGAGCTATAATTGTGCAGCTATAACGGGATCTATTTCTTCCTTGTGCTTCATTAGCCGTATACTTAATGGTCTACCTCATTTTGACAGCTTCATTCAACATGAGTTTGGCACCACTACTTGCAAGATACCAATTATTTATAAGTTTATTAAGTCTTTAGAGTTTGGAGTTATCATATTCACCATGAAGAGTATGGCCTAGCTGTAGATGTAAGGCACTAAAGAGTAATAACTATCACGTAATAGATGTATTCACTCTTTTCTTTGCAACGATCTCACAAATTATCAACAATTGCAAAGATAATTCACACCTATTATAAGAAAGGTGGAGTCTTTGATTAATAAGACACAAAACAGAGCAAACGTTTGGTTACAAAATTAGCAGCTTGAGGCTACAACTCTCCTACAGTGACAATACAACTCTCCAAAGTACAATACAACTCACAAAATGCCTTTTCCTCCCTTTCTCCTCTCTACTTATTTGCCTACGGTAGATGCCAAGTACTCATTAATTTATGCCTTTGTCTTCTAACTCACTCAGGTCTGCTCTGTGCTAGGCTCTGGTTTCCGTGGCTGCTTGTCCCTCTTCTGTGTTCTGTAGTATAATTCTTTTTGAGGGATGGGGGTTCGTTGCTTGTTACCTTACCTATCCCAAAACATAAAGTCATTTGCTTTTGATATCCTTCGTGTTTGTGAAATATTGGTATAGTTAATGTTATGACTCCTAATTAGTGAATTATATTTTGATTCAGATGATTTTCTTTTACTGTTCTTGTGATGGTTGTCTTGAATTGTATATTCTATGGCTATTCTCTTTCAGATGGAATTTGATGGGAAAGCAGCATCCAAGACAAAATGCGCATAAGAGGGGTGCGTTTCAAATGCTAGCCACTCCTAATGTATGCATTAAGTATTTCACTTTATATCATAAGGTTTTAGTTAGTTTGCTTATGATCTGGATTTTATTAAGGTGTGTGATTTGTTGGATCAATTTTGACAGAATTTTGTTAGTTTCAGTTTGAGTTTCTTGTTTAATGCTAGGTTCATATAACATATAGTTTCACTGATTGTTTTCGAGGTTATTATGTAGCTTAGTAATTTTTAGGTTCTCAAGGACATGCACTTGACGTTTTTCTTGATTTGGTTAATAATTGTCACTCTTTCCATCCCTAAATAATACTTCAGCAGGTCTTATTTCTATTATCTATTTTAGGCCATTCCAAAATATTAGGTTACTTACCCTTCACTAAGAAGTCCAAATAAAGACTATATTGGTACTGTGGAAATGTAAGAATATAACTAGTGAATGATAGTTATGTATCCACGTATCCTAATCAATTTCTTCAAAATGGCCCTTATCATAAGTGGCTTATTTCCTAGGGATAGAGGAATTGCATTATAGCTTGAGAGCATCAGTCTTTTGTTAGTAGCCTTCCTTTGGTATATGGTGGTGCCCCATTGGTGTCTTCCTAATATATGCCTTTATTACTTGTCATAGAAATGAAAAAAAAAAAAAAACACAACTTGATTTTCTTATGGATTTTACTTGTATGGTTTCAGATTTGAGGTGTGTTTGTGGCTGTACTATGACTAGTTGACAACAAGATTACACTGCAGTTGGCAAGATTGAGTGCCAATTGTTAATTTGCAACATGGTGCTCTTTGCACAACTTTTCAAAGCTGATTTGTGTTTCTTACTAGATTGCTCAACTTCATAATTTGCAAAAAATAATGTTGTTTTTCTGAAACAAGTTCCACTGTGTAGTTCATGCCCGGCCCGGCGGCCCACACCCCCTCTCCCCCAAAAAATCTCAGCTTTGTTGCATGTCTGACTTTATTTATTATTAGGTTTATAATTTCCTGAATCCTGATATCTCTTGCACATACATACGCTCACCGCCTTTCCCTCCCTCTCTTTTTTCCGGTTAATTAACATAGATGAGGTTATACTATGTATCTATGAGTTTCTCTTTTTCTCCTCAGGCATCTTCCGGAAAGGGGAGTTTTAGGAAAGAAGTACTTATGGTAGATCCATTGGAGGCCAAGAAAATTGCTGACAAGCAAATGGTAGTGATAAAAACAGAAGAGAGATATGAGGTTCGTAATTTTCAGTCTTTGAACTTATTTGCAGCACAATTGGTGCTGCTTTCCTTTGCGACTGACATGTTAAAGCTAAATCTAGGGAAACTTAGTCCTGCGAAACCTTTAAGAATTAAGAGATCTGAAGTCCTTAGCCATGCTGTTTTATGTTTTCCTCCATTCTTGTTTACTTCAGAGGATTCTATAACTGTTTTATCTTGAAGCATTTCACTCTGGTAGGTTTGGAGTTTCGGACCAATTTATAATGGAAATCTAAAATCCACAAAGAACTAATGGGCTTCTATTGATTCCTTTTATATAAAAGGCTCAAATACAGTTCTAAGTTTCTAACTTCTGAAGGGTTGGCCTTATAAGTCAATGAACTAATGCTTGTTCTAATTTATCCACTCATTGACTCGCTACTGTGTGAGCTAAAAGCCTATAGTATTTATAGTGAACTATTCTTGTATTACTTTTGAACCTCTAGCTGTAATCCAGTAATGCAATTCATAATGCATTAATGTTTGATGGTTGATTTCTTAGGACCATAAGTTTAGCACGTTTTAATTGTGTGATTCTGGACAAGCCGAACTGTGTAACTTATATATGGAGTGATTAGGCTTTACCAGTTGCAGTCTTAACTGTTTGTGGTAGATAGTTACTGAAGAAAAAATGGATTTTTCTTTCTTGTTAAAAAGTTAAAACAACTCCGTCCATTCCACTCTTATTACTGATATTTGTAGGAGAATTATTTTAGAAAATGGCTTTGACTGGATTTGGGGTAAAAAAAAATCATATGCTTCTCACATTACACCTTCTCTTTCGAAGAAAATGGATGATTAAGCCCATTAAGGTGGAATACCTAAAATCAAAATGTACAATTAGGATAATCGTGAAACAAGCTAATCATGTATTGGTCACATATGTTTCCACCCATACTTCAGAGTTCAGATATAACCATTTTCCATGCCACAGGGATATTTGACTTATGGAGTTACTGTTTATATTGACCTAAGGGGCTCCATGTTCTTTATCTTTATTCAGTAATTCCTCTCATCTGTGATAAGTATAGCTTATTGGCCTTCAACACTACACTATTAGTTTTCCTTGTGATCTTTTAAATTTATCCCACCTTTCTTTTACCTCGTCACCTTGGGCTGAGCCTTGCCAGTTTTTTCTAACAGAGAATGAGAGACAGAACATCTTATTCTGTAATTCAGATTCAGGATTCATTTTGGTAAAAATCAATAAAGCATCGTTGCTCAATGCTGTCTAGATGGTTGTCAGTGACATACTGCCGCCATGTCATTTGACTTGTTATCACCCTCAATTCAGAAACAATAGTCATGTGGGAAAAATGCCACATGTCCTGCAATTGATTAGGTTTAAGAAATCTCTTCCACTTAATTTGGGTGATGGAGAGAGGACAACTATTATTTGAGGGGGTTTCAGTGAAAGAATGGTGGATCCTTAATTATCAGTGGTTACTGGTTAGGACTTACTACATTTGCATTATCATCCCCTCCCCTTTGGCCCTCCCACGTTAAAAAAATTGTAACAGGAGTTTCTGACTGCAGAGAAGGCGTCAAATTGAAGCGATCAATGGAGCATGGGCGATGATTGGCCTCACAATTGGTTTAGTCATCGAAGGTCATACAGGAAAGAGTTTCTTGGGTCAGGTATGTTTTTCTTTTTTCTTTATTTTTGGTGTAACTGTATTTTAAGACCTTTGAAGTAAGATATTTGAGTGTAACACACTAATGCTATTGTGTGATAGCTCGATGGATATCGGCATGCTGTTCTGAGCTTCTTCGTCTGGTGGTAGAAGTTTTCCCATTCGGGCATTTGAGTTTATAGCCGTAGATTGATGGAGTTTGTACATGTTCAAGAGATTTACATTCATCCCTACCAAATTCGCAAAAAAAAAAATCTGCTTACCATCTAATTCTTGTATTTTATTGTTTTTATCATCACATTTAATCAGACAACTCCGTTCATGCTGATTCTTTCAGCAAAAGAAATTCCAATGATAGAAACACATTGAAACCAATGTGATTTGATTTGATACCCTTGTTCTTGTAATGTGACATGATATACTCTTGTACTTCGTATGTTGTACTTTGTATTCTCACGAACTGTAAACGAGGCATTATCGTTACCGACATTTATAACCGATGAAGAAAACCGTGATGGGATAGCCGGAATATTCTACCGGGAAATAGTACTTTGCTTTGGTCATAGGAATTTCTGCATGAAATTCCGCCGGACATTTTTCACCAATCCTTTTTTTATTATTCATTGACTCG

mRNA sequence

GACAATTATGCCCTTTTGCCTCAACCACAACAACAAAATAGAACGAGAGGAAGAGGGAGAAAGAGCGTGGGAAATCATAGCTTGAAAATGGCAGCCTCAGCTCTTCCAATCACTGGATGCATTATCCCCTCCACCCCGCGTCAATCCTTCTTCACGCAACGTCCTGCTTCTATTTTGCAATGGAATTTGATGGGAAAGCAGCATCCAAGACAAAATGCGCATAAGAGGGGTGCGTTTCAAATGCTAGCCACTCCTAATGCATCTTCCGGAAAGGGGAGTTTTAGGAAAGAAGTACTTATGGTAGATCCATTGGAGGCCAAGAAAATTGCTGACAAGCAAATGGTAGTGATAAAAACAGAAGAGAGATATGAGAGAAGGCGTCAAATTGAAGCGATCAATGGAGCATGGGCGATGATTGGCCTCACAATTGGTTTAGTCATCGAAGGTCATACAGGAAAGAGTTTCTTGGGTCAGCTCGATGGATATCGGCATGCTGTTCTGAGCTTCTTCGTCTGGTGGTAGAAGTTTTCCCATTCGGGCATTTGAGTTTATAGCCGTAGATTGATGGAGTTTGTACATGTTCAAGAGATTTACATTCATCCCTACCAAATTCGCAAAAAAAAAAATCTGCTTACCATCTAATTCTTGTATTTTATTGTTTTTATCATCACATTTAATCAGACAACTCCGTTCATGCTGATTCTTTCAGCAAAAGAAATTCCAATGATAGAAACACATTGAAACCAATGTGATTTGATTTGATACCCTTGTTCTTGTAATGTGACATGATATACTCTTGTACTTCGTATGTTGTACTTTGTATTCTCACGAACTGTAAACGAGGCATTATCGTTACCGACATTTATAACCGATGAAGAAAACCGTGATGGGATAGCCGGAATATTCTACCGGGAAATAGTACTTTGCTTTGGTCATAGGAATTTCTGCATGAAATTCCGCCGGACATTTTTCACCAATCCTTTTTTTATTATTCATTGACTCG

Coding sequence (CDS)

ATGGCAGCCTCAGCTCTTCCAATCACTGGATGCATTATCCCCTCCACCCCGCGTCAATCCTTCTTCACGCAACGTCCTGCTTCTATTTTGCAATGGAATTTGATGGGAAAGCAGCATCCAAGACAAAATGCGCATAAGAGGGGTGCGTTTCAAATGCTAGCCACTCCTAATGCATCTTCCGGAAAGGGGAGTTTTAGGAAAGAAGTACTTATGGTAGATCCATTGGAGGCCAAGAAAATTGCTGACAAGCAAATGGTAGTGATAAAAACAGAAGAGAGATATGAGAGAAGGCGTCAAATTGAAGCGATCAATGGAGCATGGGCGATGATTGGCCTCACAATTGGTTTAGTCATCGAAGGTCATACAGGAAAGAGTTTCTTGGGTCAGCTCGATGGATATCGGCATGCTGTTCTGAGCTTCTTCGTCTGGTGGTAG

Protein sequence

MAASALPITGCIIPSTPRQSFFTQRPASILQWNLMGKQHPRQNAHKRGAFQMLATPNASSGKGSFRKEVLMVDPLEAKKIADKQMVVIKTEERYERRRQIEAINGAWAMIGLTIGLVIEGHTGKSFLGQLDGYRHAVLSFFVWW

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo16641	Spo16641	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo16641.1	Spo16641.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16641.1.exon.1	Spo16641.1.exon.1	exon
Spo16641.1.exon.2	Spo16641.1.exon.2	exon
Spo16641.1.exon.3	Spo16641.1.exon.3	exon
Spo16641.1.exon.4	Spo16641.1.exon.4	exon
Spo16641.1.exon.5	Spo16641.1.exon.5	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16641.1.utr5p.1	Spo16641.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16641.1.CDS.1	Spo16641.1.CDS.1	CDS
Spo16641.1.CDS.2	Spo16641.1.CDS.2	CDS
Spo16641.1.CDS.3	Spo16641.1.CDS.3	CDS
Spo16641.1.CDS.4	Spo16641.1.CDS.4	CDS
Spo16641.1.CDS.5	Spo16641.1.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16641.1.utr3p.1	Spo16641.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo16641.1 vs. NCBI nr
Match: gi|902233295|gb|KNA22983.1| (hypothetical protein SOVF_028910 [Spinacia oleracea])

HSP 1 Score: 292.0 bits (746), Expect = 5.800e-76
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1


		  
Query: 1   MAASALPITGCIIPSTPRQSFFTQRPASILQWNLMGKQHPRQNAHKRGAFQMLATPNASS 60
           MAASALPITGCIIPSTPRQSFFTQRPASILQWNLMGKQHPRQNAHKRGAFQMLATPNASS
Sbjct: 1   MAASALPITGCIIPSTPRQSFFTQRPASILQWNLMGKQHPRQNAHKRGAFQMLATPNASS 60

Query: 61  GKGSFRKEVLMVDPLEAKKIADKQMVVIKTEERYERRRQIEAINGAWAMIGLTIGLVIEG 120
           GKGSFRKEVLMVDPLEAKKIADKQMVVIKTEERYERRRQIEAINGAWAMIGLTIGLVIEG
Sbjct: 61  GKGSFRKEVLMVDPLEAKKIADKQMVVIKTEERYERRRQIEAINGAWAMIGLTIGLVIEG 120

Query: 121 HTGKSFLGQLDGYRHAVLSFFVWW 145
           HTGKSFLGQLDGYRHAVLSFFVWW
Sbjct: 121 HTGKSFLGQLDGYRHAVLSFFVWW 144

[Close]

BLAST of Spo16641.1 vs. NCBI nr
Match: gi|731352768|ref|XP_010687710.1| (PREDICTED: uncharacterized protein LOC104901794 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 208.0 bits (528), Expect = 1.100e-50
Identity = 104/144 (72.22%), Postives = 119/144 (82.64%), Query Frame = 1


		  
Query: 1   MAASALPITGCIIPSTPRQSFFTQRPASILQWNLMGKQHPRQNAHKRGAFQMLATPNASS 60
           MAAS LP+ GCIIPST  QSFFTQ  ASILQWN +GKQH R+  + RGAF+MLA P+ SS
Sbjct: 1   MAASGLPVIGCIIPSTRCQSFFTQHSASILQWNFIGKQHSRRFTNTRGAFRMLANPDVSS 60

Query: 61  GKGSFRKEVLMVDPLEAKKIADKQMVVIKTEERYERRRQIEAINGAWAMIGLTIGLVIEG 120
           GK SFRKEVLMVDP+EAKK+A KQMV IKT+E++ERRR+IEAINGAWAMIGLT GL+IE 
Sbjct: 61  GKSSFRKEVLMVDPVEAKKLAAKQMVEIKTKEKFERRRRIEAINGAWAMIGLTAGLIIEC 120

Query: 121 HTGKSFLGQLDGYRHAVLSFFVWW 145
            TGK  LGQL+ Y H +LSFFV W
Sbjct: 121 QTGKGILGQLNEYWHTILSFFVRW 144

[Close]

BLAST of Spo16641.1 vs. NCBI nr
Match: gi|1000937230|ref|XP_015583994.1| (PREDICTED: uncharacterized protein LOC8259350 [Ricinus communis])

HSP 1 Score: 136.3 bits (342), Expect = 4.100e-29
Identity = 75/141 (53.19%), Postives = 97/141 (68.79%), Query Frame = 1


		  
Query: 4   SALPITGCIIPST--PRQSFFTQRPASILQWNLMGKQHPRQNAHKRGAFQMLATPNASSG 63
           S L I G ++ S+  P  S   QR A +++W    +     +  K  AF++LA PN  SG
Sbjct: 6   SPLSINGNLLLSSQYPFHSHILQRSAHVVKWGFR-RDKDSSSRTKSQAFRILANPNEVSG 65

Query: 64  KGSFRKEVLMVDPLEAKKIADKQMVVIKTEERYERRRQIEAINGAWAMIGLTIGLVIEGH 123
           K  F+KEV+MVDPLEAK++A KQM  I+ +E+++RRRQIEAINGAWAMIGLT GLVIEG 
Sbjct: 66  KRDFQKEVIMVDPLEAKRLAAKQMKEIQAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQ 125

Query: 124 TGKSFLGQLDGYRHAVLSFFV 143
           TGKS L QL GY  A++ FF+
Sbjct: 126 TGKSILDQLAGYWSAIVHFFL 145

[Close]

BLAST of Spo16641.1 vs. NCBI nr
Match: gi|802633462|ref|XP_012077487.1| (PREDICTED: uncharacterized protein LOC105638302 [Jatropha curcas])

HSP 1 Score: 134.8 bits (338), Expect = 1.200e-28
Identity = 79/145 (54.48%), Postives = 98/145 (67.59%), Query Frame = 1


		  
Query: 3   ASALPITGCIIPSTPRQSFFTQ--RPASILQWNLMGKQHPRQNAH---KRGAFQMLATPN 62
           +S LPI G I+ S    S      RPA+IL+W   G+     +A    KR AF++LA PN
Sbjct: 5   SSVLPINGNILISCQYSSLSLNLHRPATILKWGF-GRDRDNNSASSRTKRQAFRILANPN 64

Query: 63  ASSGKGSFRKEVLMVDPLEAKKIADKQMVVIKTEERYERRRQIEAINGAWAMIGLTIGLV 122
            S GKG  ++E++MVDPLEAK++A KQM  I+ +ER +RRR IEAINGAWAMIGLT GLV
Sbjct: 65  VS-GKGDSKREIIMVDPLEAKRLAAKQMQEIQAKERIKRRRLIEAINGAWAMIGLTAGLV 124

Query: 123 IEGHTGKSFLGQLDGYRHAVLSFFV 143
           IEG TGKS L QL GY  A++  FV
Sbjct: 125 IEGQTGKSILDQLAGYWFAIIHLFV 147

[Close]

BLAST of Spo16641.1 vs. NCBI nr
Match: gi|1009107385|ref|XP_015879487.1| (PREDICTED: uncharacterized protein LOC107415642 [Ziziphus jujuba])

HSP 1 Score: 133.3 bits (334), Expect = 3.500e-28
Identity = 74/144 (51.39%), Postives = 93/144 (64.58%), Query Frame = 1


		  
Query: 2   AASALPITGCIIPSTPRQSFFTQRPASILQ---WNLMGKQHPRQNAHKRGAFQMLATPNA 61
           + S LPI G    ST    F T RP+S +    W      +      +  AFQ+LA PN 
Sbjct: 3   STSLLPINGGYPLSTHCSFFPTHRPSSTISKWGWRRYEDANIVVYRTRSQAFQVLANPNV 62

Query: 62  SSGKGSFRKEVLMVDPLEAKKIADKQMVVIKTEERYERRRQIEAINGAWAMIGLTIGLVI 121
           S  KG F ++V+MVDPLEAK++A KQM  IK +E+++R+RQIEAINGAWAMIGL  GLVI
Sbjct: 63  SPNKGDFNRKVIMVDPLEAKRLAAKQMEQIKAKEKFKRQRQIEAINGAWAMIGLAAGLVI 122

Query: 122 EGHTGKSFLGQLDGYRHAVLSFFV 143
           EGHTGK  L QL GY   +++FFV
Sbjct: 123 EGHTGKGILAQLAGYWSIIVNFFV 146

[Close]

BLAST of Spo16641.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RU45_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_028910 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 4.100e-76
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1


		  
Query: 1   MAASALPITGCIIPSTPRQSFFTQRPASILQWNLMGKQHPRQNAHKRGAFQMLATPNASS 60
           MAASALPITGCIIPSTPRQSFFTQRPASILQWNLMGKQHPRQNAHKRGAFQMLATPNASS
Sbjct: 1   MAASALPITGCIIPSTPRQSFFTQRPASILQWNLMGKQHPRQNAHKRGAFQMLATPNASS 60

Query: 61  GKGSFRKEVLMVDPLEAKKIADKQMVVIKTEERYERRRQIEAINGAWAMIGLTIGLVIEG 120
           GKGSFRKEVLMVDPLEAKKIADKQMVVIKTEERYERRRQIEAINGAWAMIGLTIGLVIEG
Sbjct: 61  GKGSFRKEVLMVDPLEAKKIADKQMVVIKTEERYERRRQIEAINGAWAMIGLTIGLVIEG 120

Query: 121 HTGKSFLGQLDGYRHAVLSFFVWW 145
           HTGKSFLGQLDGYRHAVLSFFVWW
Sbjct: 121 HTGKSFLGQLDGYRHAVLSFFVWW 144

[Close]

BLAST of Spo16641.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BUG6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g192300 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 7.700e-51
Identity = 104/144 (72.22%), Postives = 119/144 (82.64%), Query Frame = 1


		  
Query: 1   MAASALPITGCIIPSTPRQSFFTQRPASILQWNLMGKQHPRQNAHKRGAFQMLATPNASS 60
           MAAS LP+ GCIIPST  QSFFTQ  ASILQWN +GKQH R+  + RGAF+MLA P+ SS
Sbjct: 1   MAASGLPVIGCIIPSTRCQSFFTQHSASILQWNFIGKQHSRRFTNTRGAFRMLANPDVSS 60

Query: 61  GKGSFRKEVLMVDPLEAKKIADKQMVVIKTEERYERRRQIEAINGAWAMIGLTIGLVIEG 120
           GK SFRKEVLMVDP+EAKK+A KQMV IKT+E++ERRR+IEAINGAWAMIGLT GL+IE 
Sbjct: 61  GKSSFRKEVLMVDPVEAKKLAAKQMVEIKTKEKFERRRRIEAINGAWAMIGLTAGLIIEC 120

Query: 121 HTGKSFLGQLDGYRHAVLSFFVWW 145
            TGK  LGQL+ Y H +LSFFV W
Sbjct: 121 QTGKGILGQLNEYWHTILSFFVRW 144

[Close]

BLAST of Spo16641.1 vs. UniProtKB/TrEMBL
Match: B9T892_RICCO (Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_0251910 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.200e-28
Identity = 75/141 (53.19%), Postives = 97/141 (68.79%), Query Frame = 1


		  
Query: 4   SALPITGCIIPST--PRQSFFTQRPASILQWNLMGKQHPRQNAHKRGAFQMLATPNASSG 63
           S L I G ++ S+  P  S   QR A +++W    +     +  K  AF++LA PN S G
Sbjct: 6   SPLSINGNLLLSSQYPFHSHILQRSAHVVKWGFR-RDKDSSSRTKSQAFRILANPNVS-G 65

Query: 64  KGSFRKEVLMVDPLEAKKIADKQMVVIKTEERYERRRQIEAINGAWAMIGLTIGLVIEGH 123
           K  F+KEV+MVDPLEAK++A KQM  I+ +E+++RRRQIEAINGAWAMIGLT GLVIEG 
Sbjct: 66  KRDFQKEVIMVDPLEAKRLAAKQMKEIQAKEKFKRRRQIEAINGAWAMIGLTAGLVIEGQ 125

Query: 124 TGKSFLGQLDGYRHAVLSFFV 143
           TGKS L QL GY  A++ FF+
Sbjct: 126 TGKSILDQLAGYWSAIVHFFL 144

[Close]

BLAST of Spo16641.1 vs. UniProtKB/TrEMBL
Match: A0A0B0P3E8_GOSAR (Early light-induced, chloroplastic OS=Gossypium arboreum GN=F383_07234 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.600e-27
Identity = 75/133 (56.39%), Postives = 91/133 (68.42%), Query Frame = 1


		  
Query: 12  IIPSTPRQSFFTQRPASILQWNLMGKQHPR--QNAHKRGAFQMLATPNASSGKGSFRKEV 71
           +  S+ RQ  F  R A+I +W+    Q      +  K  AFQ+LA PN SS KG+  KEV
Sbjct: 19  LFSSSNRQ--FPHRSATIFRWSFGRDQGSSLVTSRTKGRAFQILANPNVSSDKGNSGKEV 78

Query: 72  LMVDPLEAKKIADKQMVVIKTEERYERRRQIEAINGAWAMIGLTIGLVIEGHTGKSFLGQ 131
           +MVDPLEAK++A KQMV IK +E+ +RRRQIEAINGAWAMIGLT GLVIEG TGK  L Q
Sbjct: 79  IMVDPLEAKRLAAKQMVQIKAKEKAKRRRQIEAINGAWAMIGLTAGLVIEGQTGKGILEQ 138

Query: 132 LDGYRHAVLSFFV 143
           L GY  A++  FV
Sbjct: 139 LAGYLWAIVHIFV 149

[Close]

BLAST of Spo16641.1 vs. UniProtKB/TrEMBL
Match: D7T0R2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0065g00850 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 2.000e-27
Identity = 76/148 (51.35%), Postives = 93/148 (62.84%), Query Frame = 1


		  
Query: 1   MAASALPITGCIIPSTPRQSFFTQRPASILQWNLMGKQH-----PRQNAHKRG-AFQMLA 60
           +++S LP  G +  S P        P    Q  L   Q      PR     RG AFQ+LA
Sbjct: 2   VSSSLLPFNGALFQSIPHP------PTVFFQRGLRRGQDASLVIPRTAHSTRGQAFQILA 61

Query: 61  TPNASSGKGSFRKEVLMVDPLEAKKIADKQMVVIKTEERYERRRQIEAINGAWAMIGLTI 120
            PN S+GKG+  KEV+MVDPLEAK++A KQM   K +E+ +RRR+IEAINGAWAM+GLT 
Sbjct: 62  NPNVSAGKGNSDKEVVMVDPLEAKRLAAKQMQEFKAKEKLKRRRRIEAINGAWAMLGLTA 121

Query: 121 GLVIEGHTGKSFLGQLDGYRHAVLSFFV 143
           GLVIEGHTG   L QL GY  A++ FFV
Sbjct: 122 GLVIEGHTGNGILAQLAGYWGAIVRFFV 143

[Close]

BLAST of Spo16641.1 vs. TAIR (Arabidopsis)
Match: AT4G28025.1 (unknown protein)

HSP 1 Score: 109.8 bits (273), Expect = 1.400e-24
Identity = 59/103 (57.28%), Postives = 71/103 (68.93%), Query Frame = 1


		  
Query: 43  NAHKRGAFQMLATPNASS----GKGSFRKEVLMVDPLEAKKIADKQMVVIKTEERYERRR 102
           N  + G  ++LA PN S     GK   +KEV+MVDPLEAK++A KQM  IK  E+ +RRR
Sbjct: 51  NRARVGVVRVLANPNVSPPPPPGKAKVKKEVIMVDPLEAKRLASKQMEEIKGREKQQRRR 110

Query: 103 QIEAINGAWAMIGLTIGLVIEGHTGKSFLGQLDGYRHAVLSFF 142
           +IEAINGAWA+IGL IGLVIE  TGK  L QL GY  AV+  F
Sbjct: 111 EIEAINGAWAIIGLMIGLVIEAQTGKGILAQLAGYWSAVVHLF 153

The following BLAST results are available for this feature:

BLAST of Spo16641.1 vs. NCBI nr
BLAST of Spo16641.1 vs. UniProtKB/TrEMBL
BLAST of Spo16641.1 vs. ExPASy Swiss-Prot
BLAST of Spo16641.1 vs. TAIR (Arabidopsis)

BLAST of Spo16641.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902233295\|gb\|KNA22983.1\|	5.8e-76	100.	hypothetical protein SOVF_0289...	[more]
gi\|731352768\|ref\|XP_010687710.1\|	1.1e-50	72.2	PREDICTED: uncharacterized pro...	[more]
gi\|1000937230\|ref\|XP_015583994.1\|	4.1e-29	53.1	PREDICTED: uncharacterized pro...	[more]
gi\|802633462\|ref\|XP_012077487.1\|	1.2e-28	54.4	PREDICTED: uncharacterized pro...	[more]
gi\|1009107385\|ref\|XP_015879487.1\|	3.5e-28	51.3	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo16641.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RU45_SPIOL	4.1e-76	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BUG6_BETVU	7.7e-51	72.2	Uncharacterized protein OS=Bet...	[more]
B9T892_RICCO	3.2e-28	53.1	Putative uncharacterized prote...	[more]
A0A0B0P3E8_GOSAR	1.6e-27	56.3	Early light-induced, chloropla...	[more]
D7T0R2_VITVI	2.0e-27	51.3	Putative uncharacterized prote...	[more]

BLAST of Spo16641.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo16641.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G28025.1	1.4e-24	57.2	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 89..130 score: 2.2
None	No IPR available	PANTHER	PTHR37752	FAMILY NOT NAMED	coord: 1..144 score: 1.5
None	No IPR available	PANTHER	PTHR37752:SF1	SUBFAMILY NOT NAMED	coord: 1..144 score: 1.5

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane