Spo16436.1 (mRNA) | SpinachBase

Overview


Name	Spo16436.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L10, putative
Location	chr1 : 18580642 .. 18581340 (-)
Sequence length	699

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCCACCCTTTTCCTCTCCAAACCTCTTCCGACCACCATCAAAACCACCACCCACTCTCTCTCCTCCGTCTACCCAAACCCCTTCAAACCCAACAACCTCACATTCCCCCGCACCACCCACAAACACCCCACCACCACCACTATCACCGCTGCAATCAGCCGCACAAAGAAGGAAGAAACAGTGGAAACAGTACAGAAGCACCTCGAAAACTGCTACCTTTTAGCCGCAATCAACTACAAGGGTTTCACTGTCAAGCAATTCCAAGATCTCAGGAAAGCACTCCCGGAAAATACAACCTTAATTGTTGCTAAAAATACCCTTGTTGAGAAAGCAGTACAGGACACACAATGGGCAGCCATTAAACCTTGTATGAAAGGCATGAATGCTTGGCTTTTTGTTCATTCTGAAGAAATCCCAATTGCAATTAAGCCTTATAGAACTTTCCAGAAGGAGAGGAAGCTTGAGGATAATGACTTCACTGGTGCTTGTTTTGAGGGTAAGTTTTATGGGCCTGGTGAGGTCAAGAGATTGGAGACAATGCCTTCAAAGGCTGAGATTTTCGCGAAATTGCTCGGTTCTTTGAAGAGTCCTGGAAGTGCTCTTGTGGGTACTTTGCAGGCTCCTGCTAGGGATTTGGTGTTTCTTTTGAAGGCTTATATTAAGAAGCTTGAGGATGAGCAGCAGCAAGGCTGA

mRNA sequence

ATGGAGTCCACCCTTTTCCTCTCCAAACCTCTTCCGACCACCATCAAAACCACCACCCACTCTCTCTCCTCCGTCTACCCAAACCCCTTCAAACCCAACAACCTCACATTCCCCCGCACCACCCACAAACACCCCACCACCACCACTATCACCGCTGCAATCAGCCGCACAAAGAAGGAAGAAACAGTGGAAACAGTACAGAAGCACCTCGAAAACTGCTACCTTTTAGCCGCAATCAACTACAAGGGTTTCACTGTCAAGCAATTCCAAGATCTCAGGAAAGCACTCCCGGAAAATACAACCTTAATTGTTGCTAAAAATACCCTTGTTGAGAAAGCAGTACAGGACACACAATGGGCAGCCATTAAACCTTGTATGAAAGGCATGAATGCTTGGCTTTTTGTTCATTCTGAAGAAATCCCAATTGCAATTAAGCCTTATAGAACTTTCCAGAAGGAGAGGAAGCTTGAGGATAATGACTTCACTGGTGCTTGTTTTGAGGGTAAGTTTTATGGGCCTGGTGAGGTCAAGAGATTGGAGACAATGCCTTCAAAGGCTGAGATTTTCGCGAAATTGCTCGGTTCTTTGAAGAGTCCTGGAAGTGCTCTTGTGGGTACTTTGCAGGCTCCTGCTAGGGATTTGGTGTTTCTTTTGAAGGCTTATATTAAGAAGCTTGAGGATGAGCAGCAGCAAGGCTGA

Coding sequence (CDS)

ATGGAGTCCACCCTTTTCCTCTCCAAACCTCTTCCGACCACCATCAAAACCACCACCCACTCTCTCTCCTCCGTCTACCCAAACCCCTTCAAACCCAACAACCTCACATTCCCCCGCACCACCCACAAACACCCCACCACCACCACTATCACCGCTGCAATCAGCCGCACAAAGAAGGAAGAAACAGTGGAAACAGTACAGAAGCACCTCGAAAACTGCTACCTTTTAGCCGCAATCAACTACAAGGGTTTCACTGTCAAGCAATTCCAAGATCTCAGGAAAGCACTCCCGGAAAATACAACCTTAATTGTTGCTAAAAATACCCTTGTTGAGAAAGCAGTACAGGACACACAATGGGCAGCCATTAAACCTTGTATGAAAGGCATGAATGCTTGGCTTTTTGTTCATTCTGAAGAAATCCCAATTGCAATTAAGCCTTATAGAACTTTCCAGAAGGAGAGGAAGCTTGAGGATAATGACTTCACTGGTGCTTGTTTTGAGGGTAAGTTTTATGGGCCTGGTGAGGTCAAGAGATTGGAGACAATGCCTTCAAAGGCTGAGATTTTCGCGAAATTGCTCGGTTCTTTGAAGAGTCCTGGAAGTGCTCTTGTGGGTACTTTGCAGGCTCCTGCTAGGGATTTGGTGTTTCTTTTGAAGGCTTATATTAAGAAGCTTGAGGATGAGCAGCAGCAAGGCTGA

Protein sequence

MESTLFLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKHPTTTTITAAISRTKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQDTQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEVKRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDEQQQG

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo16436	Spo16436	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo16436.1	Spo16436.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16436.1.CDS.1	Spo16436.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16436.1.exon.1	Spo16436.1.exon.1	exon

Homology

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BLAST of Spo16436.1 vs. NCBI nr
Match: gi|902201840|gb|KNA14105.1| (hypothetical protein SOVF_110360 [Spinacia oleracea])

HSP 1 Score: 462.6 bits (1189), Expect = 4.000e-127
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1


		  
Query: 1   MESTLFLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKHPTTTTITAAISRTKKE 60
           MESTLFLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKHPTTTTITAAISRTKKE
Sbjct: 1   MESTLFLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKHPTTTTITAAISRTKKE 60

Query: 61  ETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQDTQWA 120
           ETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQDTQWA
Sbjct: 61  ETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQDTQWA 120

Query: 121 AIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEVKRLE 180
           AIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEVKRLE
Sbjct: 121 AIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEVKRLE 180

Query: 181 TMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDEQQQG 233
           TMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDEQQQG
Sbjct: 181 TMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDEQQQG 232

[Close]

BLAST of Spo16436.1 vs. NCBI nr
Match: gi|731362825|ref|XP_010693095.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 359.0 bits (920), Expect = 6.300e-96
Identity = 184/233 (78.97%), Postives = 206/233 (88.41%), Query Frame = 1


		  
Query: 1   MESTLFLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKHPTTT-TITAAISRTKK 60
           ME+TLFLSKPLP T    +HSL+S +PNP K   L F  TTHK PT+  TITAAISRTKK
Sbjct: 1   METTLFLSKPLPPT--KLSHSLTSSFPNPHK---LAFFPTTHKKPTSNFTITAAISRTKK 60

Query: 61  EETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQDTQW 120
           EETVETV+ HLENCYL+AAINYKGFTVKQFQ+LRKALPE T L+VAKNTLVEKAV++TQW
Sbjct: 61  EETVETVKSHLENCYLVAAINYKGFTVKQFQELRKALPETTKLVVAKNTLVEKAVENTQW 120

Query: 121 AAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEVKRL 180
            AIKPCMKGMNAWLFVH+EEIP A+KPYRTFQKE+KLEDNDFTGACFEGKFYGP + K L
Sbjct: 121 EAIKPCMKGMNAWLFVHTEEIPGALKPYRTFQKEKKLEDNDFTGACFEGKFYGPEDFKGL 180

Query: 181 ETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDEQQQG 233
           ETMPS+A+++AKLLGSLK+PG ALVGTLQAPARDLV +LKAYI KLE+EQQQG
Sbjct: 181 ETMPSRADVYAKLLGSLKTPGIALVGTLQAPARDLVLVLKAYINKLEEEQQQG 228

[Close]

BLAST of Spo16436.1 vs. NCBI nr
Match: gi|802540314|ref|XP_012075838.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas])

HSP 1 Score: 298.5 bits (763), Expect = 1.000e-77
Identity = 154/232 (66.38%), Postives = 186/232 (80.17%), Query Frame = 1


		  
Query: 7   LSKPLPTTIKTTTHSLSSVYPNPFKP-------NNLTFPRTTHKHPTT---TTITAAISR 66
           LS  + TT++TT  S  S  P+P +        N  +F +  HK PT+    +I +AISR
Sbjct: 22  LSPSITTTMETTLFSFPSSKPSPSQTLIQFRSTNPFSFSKPLHK-PTSYRPISINSAISR 81

Query: 67  TKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQD 126
           TKKEETVETV+  LENCYLLAAI Y GFTVKQFQ+LR++LPE++ LIVAKNTLV KA++ 
Sbjct: 82  TKKEETVETVKTQLENCYLLAAIKYTGFTVKQFQELRRSLPESSKLIVAKNTLVYKAIEG 141

Query: 127 TQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEV 186
           TQW A+KPCMKGMNAWLFVH+EEIP AIKPYR FQKE+KLEDNDFTGA FEGKFYGPG+ 
Sbjct: 142 TQWEALKPCMKGMNAWLFVHTEEIPEAIKPYRNFQKEKKLEDNDFTGAVFEGKFYGPGDF 201

Query: 187 KRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDE 229
           K+LETMPS+AEI+AK+LG+L+SP   LV TLQAPARD++ +LKAY+KKLEDE
Sbjct: 202 KQLETMPSRAEIYAKMLGALQSPAMGLVSTLQAPARDVIMVLKAYVKKLEDE 252

[Close]

BLAST of Spo16436.1 vs. NCBI nr
Match: gi|1009120791|ref|XP_015877114.1| (PREDICTED: 50S ribosomal protein L10, chloroplastic-like [Ziziphus jujuba])

HSP 1 Score: 295.0 bits (754), Expect = 1.100e-76
Identity = 155/238 (65.13%), Postives = 184/238 (77.31%), Query Frame = 1


		  
Query: 1   MESTLFL----SKPLPT----TIKTTTHSLSSVYPNPFK--PNNLTFPRTTHKHPTTTTI 60
           ME+TLF     S+P P     T+   T+ L S  PNP +  P    FP          +I
Sbjct: 1   MEATLFSFPSSSRPSPLSQTLTLSRPTNPLLSFTPNPTRINPQPRRFP----------SI 60

Query: 61  TAAISRTKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLV 120
            +AISRTKKE+TVETV+K+LENCYL+A I YKGFTVKQFQDLR++LPENT LIVAKNTLV
Sbjct: 61  RSAISRTKKEQTVETVKKNLENCYLIAGIKYKGFTVKQFQDLRRSLPENTKLIVAKNTLV 120

Query: 121 EKAVQDTQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKF 180
            KA++ TQW  +KPCM GMNAWLFVHSEEIP AIKPYR FQKERKL++NDFTGA FEGKF
Sbjct: 121 YKAIEGTQWEVLKPCMTGMNAWLFVHSEEIPAAIKPYRQFQKERKLDENDFTGAVFEGKF 180

Query: 181 YGPGEVKRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDE 229
           YGPG+ K+LE+MP++AEI+AKLLG L++P   LVGTLQAPARDLV LL+AY+ KLE+E
Sbjct: 181 YGPGDFKQLESMPTRAEIYAKLLGQLQTPALNLVGTLQAPARDLVMLLRAYVNKLEEE 228

[Close]

BLAST of Spo16436.1 vs. NCBI nr
Match: gi|595797363|ref|XP_007201264.1| (hypothetical protein PRUPE_ppa010824mg [Prunus persica])

HSP 1 Score: 293.9 bits (751), Expect = 2.500e-76
Identity = 154/236 (65.25%), Postives = 185/236 (78.39%), Query Frame = 1


		  
Query: 1   MESTLFL----SKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKHPTTTTITAAISR 60
           ME+TLF       P P+  +T + +L +   NPF   +LT PR T  H    TI +AISR
Sbjct: 1   MEATLFSFPSSKPPSPSLTQTQSKTLLTRPTNPFL--SLT-PRPTRHHHRLPTIRSAISR 60

Query: 61  TKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQD 120
           TKKE+TVET++++LENC+LLA I YKG TVKQFQDLRK LPE T LIVAKNTLV KA++ 
Sbjct: 61  TKKEQTVETIKENLENCHLLAGIKYKGLTVKQFQDLRKVLPETTKLIVAKNTLVYKAIEG 120

Query: 121 TQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEV 180
           T W A+KPCM GMNAWLFVHSEEIP AIKPYR FQKE+KL+ NDFTGA FEGKFY PG+ 
Sbjct: 121 TPWEALKPCMTGMNAWLFVHSEEIPPAIKPYRDFQKEKKLDSNDFTGAVFEGKFYAPGDF 180

Query: 181 KRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDEQQQG 233
           K+LETMP++AEI+AKLLG+L SP S+LVGT+QAPAR+LV LLKAY++KLE+E   G
Sbjct: 181 KQLETMPTRAEIYAKLLGTLNSPASSLVGTIQAPARELVMLLKAYVQKLEEESGGG 233

[Close]

BLAST of Spo16436.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3N5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_110360 PE=3 SV=1)

HSP 1 Score: 462.6 bits (1189), Expect = 2.800e-127
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 1


		  
Query: 1   MESTLFLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKHPTTTTITAAISRTKKE 60
           MESTLFLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKHPTTTTITAAISRTKKE
Sbjct: 1   MESTLFLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKHPTTTTITAAISRTKKE 60

Query: 61  ETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQDTQWA 120
           ETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQDTQWA
Sbjct: 61  ETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQDTQWA 120

Query: 121 AIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEVKRLE 180
           AIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEVKRLE
Sbjct: 121 AIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEVKRLE 180

Query: 181 TMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDEQQQG 233
           TMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDEQQQG
Sbjct: 181 TMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDEQQQG 232

[Close]

BLAST of Spo16436.1 vs. UniProtKB/TrEMBL
Match: A0A0J8E862_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g045880 PE=3 SV=1)

HSP 1 Score: 359.0 bits (920), Expect = 4.400e-96
Identity = 184/233 (78.97%), Postives = 206/233 (88.41%), Query Frame = 1


		  
Query: 1   MESTLFLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKHPTTT-TITAAISRTKK 60
           ME+TLFLSKPLP T    +HSL+S +PNP K   L F  TTHK PT+  TITAAISRTKK
Sbjct: 1   METTLFLSKPLPPT--KLSHSLTSSFPNPHK---LAFFPTTHKKPTSNFTITAAISRTKK 60

Query: 61  EETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQDTQW 120
           EETVETV+ HLENCYL+AAINYKGFTVKQFQ+LRKALPE T L+VAKNTLVEKAV++TQW
Sbjct: 61  EETVETVKSHLENCYLVAAINYKGFTVKQFQELRKALPETTKLVVAKNTLVEKAVENTQW 120

Query: 121 AAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEVKRL 180
            AIKPCMKGMNAWLFVH+EEIP A+KPYRTFQKE+KLEDNDFTGACFEGKFYGP + K L
Sbjct: 121 EAIKPCMKGMNAWLFVHTEEIPGALKPYRTFQKEKKLEDNDFTGACFEGKFYGPEDFKGL 180

Query: 181 ETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDEQQQG 233
           ETMPS+A+++AKLLGSLK+PG ALVGTLQAPARDLV +LKAYI KLE+EQQQG
Sbjct: 181 ETMPSRADVYAKLLGSLKTPGIALVGTLQAPARDLVLVLKAYINKLEEEQQQG 228

[Close]

BLAST of Spo16436.1 vs. UniProtKB/TrEMBL
Match: A0A067LF88_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15458 PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 7.000e-78
Identity = 154/232 (66.38%), Postives = 186/232 (80.17%), Query Frame = 1


		  
Query: 7   LSKPLPTTIKTTTHSLSSVYPNPFKP-------NNLTFPRTTHKHPTT---TTITAAISR 66
           LS  + TT++TT  S  S  P+P +        N  +F +  HK PT+    +I +AISR
Sbjct: 22  LSPSITTTMETTLFSFPSSKPSPSQTLIQFRSTNPFSFSKPLHK-PTSYRPISINSAISR 81

Query: 67  TKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQD 126
           TKKEETVETV+  LENCYLLAAI Y GFTVKQFQ+LR++LPE++ LIVAKNTLV KA++ 
Sbjct: 82  TKKEETVETVKTQLENCYLLAAIKYTGFTVKQFQELRRSLPESSKLIVAKNTLVYKAIEG 141

Query: 127 TQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEV 186
           TQW A+KPCMKGMNAWLFVH+EEIP AIKPYR FQKE+KLEDNDFTGA FEGKFYGPG+ 
Sbjct: 142 TQWEALKPCMKGMNAWLFVHTEEIPEAIKPYRNFQKEKKLEDNDFTGAVFEGKFYGPGDF 201

Query: 187 KRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDE 229
           K+LETMPS+AEI+AK+LG+L+SP   LV TLQAPARD++ +LKAY+KKLEDE
Sbjct: 202 KQLETMPSRAEIYAKMLGALQSPAMGLVSTLQAPARDVIMVLKAYVKKLEDE 252

[Close]

BLAST of Spo16436.1 vs. UniProtKB/TrEMBL
Match: M5VZQ9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010824mg PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.700e-76
Identity = 154/236 (65.25%), Postives = 185/236 (78.39%), Query Frame = 1


		  
Query: 1   MESTLFL----SKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKHPTTTTITAAISR 60
           ME+TLF       P P+  +T + +L +   NPF   +LT PR T  H    TI +AISR
Sbjct: 1   MEATLFSFPSSKPPSPSLTQTQSKTLLTRPTNPFL--SLT-PRPTRHHHRLPTIRSAISR 60

Query: 61  TKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQD 120
           TKKE+TVET++++LENC+LLA I YKG TVKQFQDLRK LPE T LIVAKNTLV KA++ 
Sbjct: 61  TKKEQTVETIKENLENCHLLAGIKYKGLTVKQFQDLRKVLPETTKLIVAKNTLVYKAIEG 120

Query: 121 TQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEV 180
           T W A+KPCM GMNAWLFVHSEEIP AIKPYR FQKE+KL+ NDFTGA FEGKFY PG+ 
Sbjct: 121 TPWEALKPCMTGMNAWLFVHSEEIPPAIKPYRDFQKEKKLDSNDFTGAVFEGKFYAPGDF 180

Query: 181 KRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDEQQQG 233
           K+LETMP++AEI+AKLLG+L SP S+LVGT+QAPAR+LV LLKAY++KLE+E   G
Sbjct: 181 KQLETMPTRAEIYAKLLGTLNSPASSLVGTIQAPARELVMLLKAYVQKLEEESGGG 233

[Close]

BLAST of Spo16436.1 vs. UniProtKB/TrEMBL
Match: B9RY97_RICCO (50S ribosomal protein L10, putative OS=Ricinus communis GN=RCOM_0811410 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.000e-76
Identity = 155/232 (66.81%), Postives = 183/232 (78.88%), Query Frame = 1


		  
Query: 1   MESTLFLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKHPTTTTITAAISRTKKE 60
           ME+TL LS P   T    T +    + NPF P + +F + T   P +  I +AISRTKKE
Sbjct: 1   METTL-LSFPSSKTSPCQTLTQFRSFRNPF-PLSKSFRKPTSYKPIS--INSAISRTKKE 60

Query: 61  ETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQDTQWA 120
           ETVETV+  LENCYLLAAI Y GFTVKQFQDLR+ALPE+T LIVAKNTLV KA++ T W 
Sbjct: 61  ETVETVKTQLENCYLLAAIKYTGFTVKQFQDLRRALPESTRLIVAKNTLVFKAIEGTPWE 120

Query: 121 AIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEVKRLE 180
           A+KPCMKGMNAWLFVHSEEIP A+KPYRTFQK++KLE NDFTGA FEGKFYGP + K+LE
Sbjct: 121 ALKPCMKGMNAWLFVHSEEIPEALKPYRTFQKDKKLESNDFTGAVFEGKFYGPDDFKQLE 180

Query: 181 TMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDEQQQG 233
           TMPS+AEI+AK+LG+L+SP   LV TLQAPARD++ +LKAY+KKLEDE   G
Sbjct: 181 TMPSRAEIYAKILGALQSPSIGLVSTLQAPARDVIMVLKAYVKKLEDESGGG 228

[Close]

BLAST of Spo16436.1 vs. ExPASy Swiss-Prot
Match: RK10_TOBAC (50S ribosomal protein L10, chloroplastic OS=Nicotiana tabacum GN=RPL10 PE=2 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 5.000e-77
Identity = 150/230 (65.22%), Postives = 181/230 (78.70%), Query Frame = 1


		  
Query: 1   MESTLFLSKPLPTTIKTTTHSLSSVYPNPFKPNNLTFPRTTHKHPTTT--TITAAISRTK 60
           ME+T F      T   +T+HS      + F  N+LT P   H  P +   TI +AISRTK
Sbjct: 1   MEATFF------TLPSSTSHSYPFSLKSHFN-NSLTLPTHPHFKPKSKNLTIRSAISRTK 60

Query: 61  KEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLIVAKNTLVEKAVQDTQ 120
           KEETVETV++ LE+CYLLA I YKG TVKQFQ+LR  LP+ T L+VAKNTLV KA++ T+
Sbjct: 61  KEETVETVKQQLEDCYLLAGIGYKGLTVKQFQELRSQLPDTTKLLVAKNTLVLKAIEGTK 120

Query: 121 WAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEVKR 180
           W A+KPCMKGMNAWLFVHSEEIP A+KPYRTFQKE+KLE+NDFTGA FEGKFYGP E K 
Sbjct: 121 WEALKPCMKGMNAWLFVHSEEIPAALKPYRTFQKEKKLEENDFTGAVFEGKFYGPEEFKA 180

Query: 181 LETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLEDE 229
           LET+P++AEI+A+LLGSLK P SA+VGT+QAPAR+LV +LKAY+KKLE+E
Sbjct: 181 LETLPTRAEIYAQLLGSLKGPASAVVGTIQAPARNLVMVLKAYVKKLEEE 223

[Close]

BLAST of Spo16436.1 vs. ExPASy Swiss-Prot
Match: RK10_ARATH (50S ribosomal protein L10, chloroplastic OS=Arabidopsis thaliana GN=RPL10 PE=2 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.400e-71
Identity = 131/193 (67.88%), Postives = 160/193 (82.90%), Query Frame = 1


		  
Query: 38  PRTTHK--HPTTTTITAAISRTKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKA 97
           P+T++   +P    I +A+SR KKEETVE V+ HLENC+LLAAINYKG TVKQFQDLR+ 
Sbjct: 25  PKTSNSPNYPRLPVIRSAVSRNKKEETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRT 84

Query: 98  LPENTTLIVAKNTLVEKAVQDTQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERK 157
           LP+ T LIVAKNTLV KA++ T+W A+KPCMKGMNAWLFV ++EIP AIKPYR+FQKERK
Sbjct: 85  LPDTTKLIVAKNTLVFKAIEGTKWEALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERK 144

Query: 158 LEDNDFTGACFEGKFYGPGEVKRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLV 217
           LE+NDF GA FEGKFY P   K LETMP++AE++AK+LG+L+SP   LV TLQAPAR+++
Sbjct: 145 LENNDFAGAVFEGKFYAPDNFKVLETMPTRAEVYAKMLGALQSPAINLVTTLQAPAREVI 204

Query: 218 FLLKAYIKKLEDE 229
            +L AYIKKLEDE
Sbjct: 205 MVLMAYIKKLEDE 217

[Close]

BLAST of Spo16436.1 vs. ExPASy Swiss-Prot
Match: RL10_THEP1 (50S ribosomal protein L10 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rplJ PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.300e-16
Identity = 54/175 (30.86%), Postives = 93/175 (53.14%), Query Frame = 1


		  
Query: 54  ISRTKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPEN----TTLIVAKNTL 113
           ++R +KE  VE + +  +   L+   ++ GFTV    +LR  L E         V KNTL
Sbjct: 2   LTRQQKELIVEEMSEIFKKTSLILFADFLGFTVADLTELRSKLREKYGDGARFRVVKNTL 61

Query: 114 VEKAVQDTQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGK 173
           +  A+++ ++   +  +KG  A L+V   +   A+K    F K++K + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIVYNFYKDKKADLSRLKGGFLEGK 121

Query: 174 FYGPGEVKRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKK 225
            +   EV+ +  +PSK E++A L+G +K+P + LV  L    R+LV++L A  +K
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFVLSGILRNLVYVLNAIKEK 176

[Close]

BLAST of Spo16436.1 vs. ExPASy Swiss-Prot
Match: RL10_THESQ (50S ribosomal protein L10 OS=Thermotoga sp. (strain RQ2) GN=rplJ PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.300e-16
Identity = 54/175 (30.86%), Postives = 93/175 (53.14%), Query Frame = 1


		  
Query: 54  ISRTKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPEN----TTLIVAKNTL 113
           ++R +KE  VE + +  +   L+   ++ GFTV    +LR  L E         V KNTL
Sbjct: 2   LTRQQKELIVEEMSEIFKKTSLILFADFLGFTVADLTELRSKLREKYGDGARFRVVKNTL 61

Query: 114 VEKAVQDTQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGK 173
           +  A+++ ++   +  +KG  A L+V   +   A+K    F K++K + +   G   EGK
Sbjct: 62  LNLALKNAEYEGYEEFLKGPTAVLYVTEGDPVEAVKIVYNFYKDKKADLSRLKGGFLEGK 121

Query: 174 FYGPGEVKRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKK 225
            +   EV+ +  +PSK E++A L+G +K+P + LV  L    R+LV++L A  +K
Sbjct: 122 KFTAEEVENIAKLPSKEELYAMLVGRVKAPITGLVFVLSGILRNLVYVLNAIKEK 176

[Close]

BLAST of Spo16436.1 vs. ExPASy Swiss-Prot
Match: RL10_PROMP (50S ribosomal protein L10 OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rplJ PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.300e-16
Identity = 48/170 (28.24%), Postives = 93/170 (54.71%), Query Frame = 1


		  
Query: 59  KEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKALPENTTLI-VAKNTLVEKAVQ-D 118
           K++ V  ++  L++  +   ++YKG T+K+  DLR  L  N  +  V KN+L+ KA+  +
Sbjct: 8   KQKIVTEIKSLLDDSEMAVVLDYKGLTIKEMSDLRSRLQTNNGICKVTKNSLMRKAIDGN 67

Query: 119 TQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEV 178
           + W  ++  + G NA++ +  E++  A+K  ++FQKE K  +    GA FEG+     E+
Sbjct: 68  SNWTDLESLLTGTNAFVLI-KEDVGGAVKAIQSFQKETKKSETK--GALFEGRLLSESEI 127

Query: 179 KRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLVFLLKAYIKKLE 227
           K + ++PS+  + AK+ G+L    + +  ++      +   LK + +K E
Sbjct: 128 KEIASLPSREVLMAKIAGALNGVATKIAISINEVPSGIARSLKQHSEKSE 174

[Close]

BLAST of Spo16436.1 vs. TAIR (Arabidopsis)
Match: AT5G13510.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 270.0 bits (689), Expect = 1.300e-72
Identity = 131/193 (67.88%), Postives = 160/193 (82.90%), Query Frame = 1


		  
Query: 38  PRTTHK--HPTTTTITAAISRTKKEETVETVQKHLENCYLLAAINYKGFTVKQFQDLRKA 97
           P+T++   +P    I +A+SR KKEETVE V+ HLENC+LLAAINYKG TVKQFQDLR+ 
Sbjct: 25  PKTSNSPNYPRLPVIRSAVSRNKKEETVEAVKSHLENCHLLAAINYKGLTVKQFQDLRRT 84

Query: 98  LPENTTLIVAKNTLVEKAVQDTQWAAIKPCMKGMNAWLFVHSEEIPIAIKPYRTFQKERK 157
           LP+ T LIVAKNTLV KA++ T+W A+KPCMKGMNAWLFV ++EIP AIKPYR+FQKERK
Sbjct: 85  LPDTTKLIVAKNTLVFKAIEGTKWEALKPCMKGMNAWLFVQTDEIPSAIKPYRSFQKERK 144

Query: 158 LEDNDFTGACFEGKFYGPGEVKRLETMPSKAEIFAKLLGSLKSPGSALVGTLQAPARDLV 217
           LE+NDF GA FEGKFY P   K LETMP++AE++AK+LG+L+SP   LV TLQAPAR+++
Sbjct: 145 LENNDFAGAVFEGKFYAPDNFKVLETMPTRAEVYAKMLGALQSPAINLVTTLQAPAREVI 204

Query: 218 FLLKAYIKKLEDE 229
            +L AYIKKLEDE
Sbjct: 205 MVLMAYIKKLEDE 217

[Close]

BLAST of Spo16436.1 vs. TAIR (Arabidopsis)
Match: AT3G12370.1 (Ribosomal protein L10 family protein)

HSP 1 Score: 171.8 bits (434), Expect = 5.000e-43
Identity = 82/144 (56.94%), Postives = 105/144 (72.92%), Query Frame = 1


		  
Query: 69  HLENCYLLAAINYKGFTVKQFQDLRKALPENTT--LIVAKNTLVEKAVQDTQWAAIKPCM 128
           +LENC+ +  INY G +VKQ Q+LR  L ENT   L+VAKNTLV KA++ T+W ++KPCM
Sbjct: 17  NLENCHFITGINYNGLSVKQLQELRGILRENTNTKLLVAKNTLVYKALEGTKWESLKPCM 76

Query: 129 KGMNAWLFVHSEEIPIAIKPYRTFQKERKLEDNDFTGACFEGKFYGPGEVKRLETMPSKA 188
           KGMNAWLFV SE+IP A+K +  FQKE+KL DN+  GA FE K Y P + K +ETMPS+A
Sbjct: 77  KGMNAWLFVQSEDIPAALKTFINFQKEKKLYDNNLGGAVFEEKLYAPQDYKVIETMPSRA 136

Query: 189 EIFAKLLGSLKSPGSALVGTLQAP 211
           +++  +LGSL  P   LV  LQAP
Sbjct: 137 DVYGMMLGSLHWPALDLVNALQAP 160

The following BLAST results are available for this feature:

BLAST of Spo16436.1 vs. NCBI nr
BLAST of Spo16436.1 vs. UniProtKB/TrEMBL
BLAST of Spo16436.1 vs. ExPASy Swiss-Prot
BLAST of Spo16436.1 vs. TAIR (Arabidopsis)

BLAST of Spo16436.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902201840\|gb\|KNA14105.1\|	4.0e-127	100.	hypothetical protein SOVF_1103...	[more]
gi\|731362825\|ref\|XP_010693095.1\|	6.3e-96	78.9	PREDICTED: 50S ribosomal prote...	[more]
gi\|802540314\|ref\|XP_012075838.1\|	1.0e-77	66.3	PREDICTED: 50S ribosomal prote...	[more]
gi\|1009120791\|ref\|XP_015877114.1\|	1.1e-76	65.1	PREDICTED: 50S ribosomal prote...	[more]
gi\|595797363\|ref\|XP_007201264.1\|	2.5e-76	65.2	hypothetical protein PRUPE_ppa...	[more]

BLAST of Spo16436.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R3N5_SPIOL	2.8e-127	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8E862_BETVU	4.4e-96	78.9	Uncharacterized protein OS=Bet...	[more]
A0A067LF88_JATCU	7.0e-78	66.3	Uncharacterized protein OS=Jat...	[more]
M5VZQ9_PRUPE	1.7e-76	65.2	Uncharacterized protein OS=Pru...	[more]
B9RY97_RICCO	5.0e-76	66.8	50S ribosomal protein L10, put...	[more]

BLAST of Spo16436.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RK10_TOBAC	5.0e-77	65.2	50S ribosomal protein L10, chl...	[more]
RK10_ARATH	2.4e-71	67.8	50S ribosomal protein L10, chl...	[more]
RL10_THEP1	1.3e-16	30.8	50S ribosomal protein L10 OS=T...	[more]
RL10_THESQ	1.3e-16	30.8	50S ribosomal protein L10 OS=T...	[more]
RL10_PROMP	1.3e-16	28.2	50S ribosomal protein L10 OS=P...	[more]

BLAST of Spo16436.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G13510.1	1.3e-72	67.8	Ribosomal protein L10 family p...	[more]
AT3G12370.1	5.0e-43	56.9	Ribosomal protein L10 family p...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001790	Ribosomal protein L10P	PFAM	PF00466	Ribosomal_L10	coord: 56..145 score: 3.4
IPR022973	Ribosomal protein L10	HAMAP	MF_00362	Ribosomal_L10	coord: 54..214 score: 18
None	No IPR available	PANTHER	PTHR11560	FAMILY NOT NAMED	coord: 49..231 score: 1.5
None	No IPR available	unknown	SSF160369	Ribosomal protein L10-like	coord: 56..224 score: 3.4

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding