Spo16005.1 (mRNA)

Overview
NameSpo16005.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionNADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
Locationchr3 : 3600513 .. 3600927 (-)
Sequence length315
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACACCGACATCACTGCATCAACAAAGCCCGAATACACGGTAATCGATCGGAACCCACTTTTCACCAAAGTCGTCGGCAATTTCAGCTCCCTCGATTACCTCCGTTTTGTCACTATAACCGGCGTTTCTGTCACCGTCGGCTACTTATCCGGTAATCCCTCTTCCTTTATCCTCATTTTATCAAATACCCATTTCGCAATTTCCTCTCTTTTATTTTAATTTTATTTTATCTGGGTTTTTTGGTGATTTAGGGATTAAGCCTGGGATTAAAGGTCCTTCAATGGTGACGGGCGGGCTAATCGGGGTTCTGGGAGGGTTCATGTATGCTTACCAGAACTCTGCTGGCAGACTCATGGGTTTCTTTCCTAATGATGATGAGGTAGTTAAGTACAAGAAGAAGCTTAATCAGTAA

mRNA sequence

ATGAACACCGACATCACTGCATCAACAAAGCCCGAATACACGGTAATCGATCGGAACCCACTTTTCACCAAAGTCGTCGGCAATTTCAGCTCCCTCGATTACCTCCGTTTTGTCACTATAACCGGCGTTTCTGTCACCGTCGGCTACTTATCCGGGATTAAGCCTGGGATTAAAGGTCCTTCAATGGTGACGGGCGGGCTAATCGGGGTTCTGGGAGGGTTCATGTATGCTTACCAGAACTCTGCTGGCAGACTCATGGGTTTCTTTCCTAATGATGATGAGGTAGTTAAGTACAAGAAGAAGCTTAATCAGTAA

Coding sequence (CDS)

ATGAACACCGACATCACTGCATCAACAAAGCCCGAATACACGGTAATCGATCGGAACCCACTTTTCACCAAAGTCGTCGGCAATTTCAGCTCCCTCGATTACCTCCGTTTTGTCACTATAACCGGCGTTTCTGTCACCGTCGGCTACTTATCCGGGATTAAGCCTGGGATTAAAGGTCCTTCAATGGTGACGGGCGGGCTAATCGGGGTTCTGGGAGGGTTCATGTATGCTTACCAGAACTCTGCTGGCAGACTCATGGGTTTCTTTCCTAATGATGATGAGGTAGTTAAGTACAAGAAGAAGCTTAATCAGTAA

Protein sequence

MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGPSMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo16005Spo16005gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo16005.1Spo16005.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16005.1.CDS.2Spo16005.1.CDS.2CDS
Spo16005.1.CDS.1Spo16005.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo16005.1.exon.2Spo16005.1.exon.2exon
Spo16005.1.exon.1Spo16005.1.exon.1exon


Homology
BLAST of Spo16005.1 vs. NCBI nr
Match: gi|902212875|gb|KNA17110.1| (hypothetical protein SOVF_083060 [Spinacia oleracea])

HSP 1 Score: 209.5 bits (532), Expect = 2.700e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1

		  

Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP
Sbjct: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 105
           SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ
Sbjct: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 104

BLAST of Spo16005.1 vs. NCBI nr
Match: gi|902225342|gb|KNA20036.1| (hypothetical protein SOVF_056130 isoform A [Spinacia oleracea])

HSP 1 Score: 201.8 bits (512), Expect = 5.700e-49
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1

		  

Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPE+ V+DRNP FTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP
Sbjct: 1   MNTDITASTKPEFKVVDRNPPFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 105
           SMVTGGLIGV+GGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 104

BLAST of Spo16005.1 vs. NCBI nr
Match: gi|731329987|ref|XP_010675885.1| (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 198.7 bits (504), Expect = 4.900e-48
Identity = 96/104 (92.31%), Postives = 102/104 (98.08%), Query Frame = 1

		  

Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEYTV+DRNP FTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP
Sbjct: 1   MNTDITASTKPEYTVVDRNPPFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 105
           SMVTGGLIG++GGFMYAYQNSAGRLMGFFPN+DEV +YKK+LNQ
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEDEVARYKKQLNQ 104

BLAST of Spo16005.1 vs. NCBI nr
Match: gi|351720975|ref|NP_001237706.1| (uncharacterized protein LOC100306111 [Glycine max])

HSP 1 Score: 189.9 bits (481), Expect = 2.300e-45
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 1

		  

Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEY VIDRNP FTKVVGNF++LDYLRFVTITGVSVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKK 102
           SMVTGGLIGV+GGFMYAYQNSAGRLMGFFPNDDEV +Y KK
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNKK 101

BLAST of Spo16005.1 vs. NCBI nr
Match: gi|1009107319|ref|XP_015879124.1| (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Ziziphus jujuba])

HSP 1 Score: 189.9 bits (481), Expect = 2.300e-45
Identity = 92/100 (92.00%), Postives = 97/100 (97.00%), Query Frame = 1

		  

Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEY VIDRNP FTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKK 101
           SMVTGGLIG++GGFMYAYQNSAGRLMGFFPNDDEV +Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDDEVARYRK 100

BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCB4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_083060 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.900e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1

		  

Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP
Sbjct: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 105
           SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ
Sbjct: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 104

BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKJ6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056130 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.000e-49
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1

		  

Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPE+ V+DRNP FTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP
Sbjct: 1   MNTDITASTKPEFKVVDRNPPFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 105
           SMVTGGLIGV+GGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 104

BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CLI3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g089980 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.400e-48
Identity = 96/104 (92.31%), Postives = 102/104 (98.08%), Query Frame = 1

		  

Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEYTV+DRNP FTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP
Sbjct: 1   MNTDITASTKPEYTVVDRNPPFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 105
           SMVTGGLIG++GGFMYAYQNSAGRLMGFFPN+DEV +YKK+LNQ
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEDEVARYKKQLNQ 104

BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Match: C6SY14_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G011900 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.600e-45
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 1

		  

Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEY VIDRNP FTKVVGNF++LDYLRFVTITGVSVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKK 102
           SMVTGGLIGV+GGFMYAYQNSAGRLMGFFPNDDEV +Y KK
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNKK 101

BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Match: A0A0B2S936_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009944 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.600e-45
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 1

		  

Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEY VIDRNP FTKVVGNF++LDYLRFVTITGVSVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKK 102
           SMVTGGLIGV+GGFMYAYQNSAGRLMGFFPNDDEV +Y KK
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNKK 101

BLAST of Spo16005.1 vs. TAIR (Arabidopsis)
Match: AT4G16450.1 (unknown protein)

HSP 1 Score: 175.6 bits (444), Expect = 1.600e-44
Identity = 84/101 (83.17%), Postives = 92/101 (91.09%), Query Frame = 1

		  

Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITA  K +Y V+DRNP FTKVVGNFS+LDYLRF TITG+SVTVGYLSGIKPGIKGP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKK 102
           SMVTGGLIG++GGFMYAYQNSAGRLMGFFPND EV  Y+K+
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQKR 101

The following BLAST results are available for this feature:
BLAST of Spo16005.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902212875|gb|KNA17110.1|2.7e-51100.hypothetical protein SOVF_0830... [more]
gi|902225342|gb|KNA20036.1|5.7e-4995.1hypothetical protein SOVF_0561... [more]
gi|731329987|ref|XP_010675885.1|4.9e-4892.3PREDICTED: NADH-ubiquinone oxi... [more]
gi|351720975|ref|NP_001237706.1|2.3e-4591.0uncharacterized protein LOC100... [more]
gi|1009107319|ref|XP_015879124.1|2.3e-4592.0PREDICTED: NADH-ubiquinone oxi... [more]
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BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RCB4_SPIOL1.9e-51100.Uncharacterized protein OS=Spi... [more]
A0A0K9RKJ6_SPIOL4.0e-4995.1Uncharacterized protein OS=Spi... [more]
A0A0J8CLI3_BETVU3.4e-4892.3Uncharacterized protein OS=Bet... [more]
C6SY14_SOYBN1.6e-4591.0Uncharacterized protein OS=Gly... [more]
A0A0B2S936_GLYSO1.6e-4591.0Uncharacterized protein OS=Gly... [more]
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BLAST of Spo16005.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo16005.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G16450.11.6e-4483.1unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019721NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminalPFAMPF10785NADH-u_ox-rdasecoord: 11..89
score: 2.5
NoneNo IPR availablePANTHERPTHR34062FAMILY NOT NAMEDcoord: 1..104
score: 2.0
NoneNo IPR availablePANTHERPTHR34062:SF1SUBFAMILY NOT NAMEDcoord: 1..104
score: 2.0

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009853 photorespiration
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0051788 response to misfolded protein
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
cellular_component GO:0005747 mitochondrial respiratory chain complex I