Spo16005.1 (mRNA) | SpinachBase

Overview


Name	Spo16005.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit
Location	chr3 : 3600513 .. 3600927 (-)
Sequence length	315

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACACCGACATCACTGCATCAACAAAGCCCGAATACACGGTAATCGATCGGAACCCACTTTTCACCAAAGTCGTCGGCAATTTCAGCTCCCTCGATTACCTCCGTTTTGTCACTATAACCGGCGTTTCTGTCACCGTCGGCTACTTATCCGGTAATCCCTCTTCCTTTATCCTCATTTTATCAAATACCCATTTCGCAATTTCCTCTCTTTTATTTTAATTTTATTTTATCTGGGTTTTTTGGTGATTTAGGGATTAAGCCTGGGATTAAAGGTCCTTCAATGGTGACGGGCGGGCTAATCGGGGTTCTGGGAGGGTTCATGTATGCTTACCAGAACTCTGCTGGCAGACTCATGGGTTTCTTTCCTAATGATGATGAGGTAGTTAAGTACAAGAAGAAGCTTAATCAGTAA

mRNA sequence

ATGAACACCGACATCACTGCATCAACAAAGCCCGAATACACGGTAATCGATCGGAACCCACTTTTCACCAAAGTCGTCGGCAATTTCAGCTCCCTCGATTACCTCCGTTTTGTCACTATAACCGGCGTTTCTGTCACCGTCGGCTACTTATCCGGGATTAAGCCTGGGATTAAAGGTCCTTCAATGGTGACGGGCGGGCTAATCGGGGTTCTGGGAGGGTTCATGTATGCTTACCAGAACTCTGCTGGCAGACTCATGGGTTTCTTTCCTAATGATGATGAGGTAGTTAAGTACAAGAAGAAGCTTAATCAGTAA

Coding sequence (CDS)

ATGAACACCGACATCACTGCATCAACAAAGCCCGAATACACGGTAATCGATCGGAACCCACTTTTCACCAAAGTCGTCGGCAATTTCAGCTCCCTCGATTACCTCCGTTTTGTCACTATAACCGGCGTTTCTGTCACCGTCGGCTACTTATCCGGGATTAAGCCTGGGATTAAAGGTCCTTCAATGGTGACGGGCGGGCTAATCGGGGTTCTGGGAGGGTTCATGTATGCTTACCAGAACTCTGCTGGCAGACTCATGGGTTTCTTTCCTAATGATGATGAGGTAGTTAAGTACAAGAAGAAGCTTAATCAGTAA

Protein sequence

MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGPSMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo16005	Spo16005	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo16005.1	Spo16005.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16005.1.CDS.2	Spo16005.1.CDS.2	CDS
Spo16005.1.CDS.1	Spo16005.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo16005.1.exon.2	Spo16005.1.exon.2	exon
Spo16005.1.exon.1	Spo16005.1.exon.1	exon

Homology

[Close]

BLAST of Spo16005.1 vs. NCBI nr
Match: gi|902212875|gb|KNA17110.1| (hypothetical protein SOVF_083060 [Spinacia oleracea])

HSP 1 Score: 209.5 bits (532), Expect = 2.700e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


		  
Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP
Sbjct: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 105
           SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ
Sbjct: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 104

[Close]

BLAST of Spo16005.1 vs. NCBI nr
Match: gi|902225342|gb|KNA20036.1| (hypothetical protein SOVF_056130 isoform A [Spinacia oleracea])

HSP 1 Score: 201.8 bits (512), Expect = 5.700e-49
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1


		  
Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPE+ V+DRNP FTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP
Sbjct: 1   MNTDITASTKPEFKVVDRNPPFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 105
           SMVTGGLIGV+GGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 104

[Close]

BLAST of Spo16005.1 vs. NCBI nr
Match: gi|731329987|ref|XP_010675885.1| (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 198.7 bits (504), Expect = 4.900e-48
Identity = 96/104 (92.31%), Postives = 102/104 (98.08%), Query Frame = 1


		  
Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEYTV+DRNP FTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP
Sbjct: 1   MNTDITASTKPEYTVVDRNPPFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 105
           SMVTGGLIG++GGFMYAYQNSAGRLMGFFPN+DEV +YKK+LNQ
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEDEVARYKKQLNQ 104

[Close]

BLAST of Spo16005.1 vs. NCBI nr
Match: gi|351720975|ref|NP_001237706.1| (uncharacterized protein LOC100306111 [Glycine max])

HSP 1 Score: 189.9 bits (481), Expect = 2.300e-45
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 1


		  
Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEY VIDRNP FTKVVGNF++LDYLRFVTITGVSVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKK 102
           SMVTGGLIGV+GGFMYAYQNSAGRLMGFFPNDDEV +Y KK
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNKK 101

[Close]

BLAST of Spo16005.1 vs. NCBI nr
Match: gi|1009107319|ref|XP_015879124.1| (PREDICTED: NADH-ubiquinone oxidoreductase 20.9 kDa subunit-like [Ziziphus jujuba])

HSP 1 Score: 189.9 bits (481), Expect = 2.300e-45
Identity = 92/100 (92.00%), Postives = 97/100 (97.00%), Query Frame = 1


		  
Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEY VIDRNP FTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKK 101
           SMVTGGLIG++GGFMYAYQNSAGRLMGFFPNDDEV +Y+K
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDDEVARYRK 100

[Close]

BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCB4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_083060 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 1.900e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


		  
Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP
Sbjct: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 105
           SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ
Sbjct: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 104

[Close]

BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKJ6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_056130 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 4.000e-49
Identity = 99/104 (95.19%), Postives = 102/104 (98.08%), Query Frame = 1


		  
Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPE+ V+DRNP FTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP
Sbjct: 1   MNTDITASTKPEFKVVDRNPPFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 105
           SMVTGGLIGV+GGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 104

[Close]

BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CLI3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g089980 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.400e-48
Identity = 96/104 (92.31%), Postives = 102/104 (98.08%), Query Frame = 1


		  
Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEYTV+DRNP FTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP
Sbjct: 1   MNTDITASTKPEYTVVDRNPPFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKKLNQ 105
           SMVTGGLIG++GGFMYAYQNSAGRLMGFFPN+DEV +YKK+LNQ
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNEDEVARYKKQLNQ 104

[Close]

BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Match: C6SY14_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G011900 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.600e-45
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 1


		  
Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEY VIDRNP FTKVVGNF++LDYLRFVTITGVSVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKK 102
           SMVTGGLIGV+GGFMYAYQNSAGRLMGFFPNDDEV +Y KK
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNKK 101

[Close]

BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Match: A0A0B2S936_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_009944 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.600e-45
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 1


		  
Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITASTKPEY VIDRNP FTKVVGNF++LDYLRFVTITGVSVTVGYLSGIKPGI+GP
Sbjct: 1   MNTDITASTKPEYPVIDRNPPFTKVVGNFNTLDYLRFVTITGVSVTVGYLSGIKPGIRGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKK 102
           SMVTGGLIGV+GGFMYAYQNSAGRLMGFFPNDDEV +Y KK
Sbjct: 61  SMVTGGLIGVMGGFMYAYQNSAGRLMGFFPNDDEVARYNKK 101

[Close]

BLAST of Spo16005.1 vs. TAIR (Arabidopsis)
Match: AT4G16450.1 (unknown protein)

HSP 1 Score: 175.6 bits (444), Expect = 1.600e-44
Identity = 84/101 (83.17%), Postives = 92/101 (91.09%), Query Frame = 1


		  
Query: 1   MNTDITASTKPEYTVIDRNPLFTKVVGNFSSLDYLRFVTITGVSVTVGYLSGIKPGIKGP 60
           MNTDITA  K +Y V+DRNP FTKVVGNFS+LDYLRF TITG+SVTVGYLSGIKPGIKGP
Sbjct: 1   MNTDITALEKAQYPVVDRNPAFTKVVGNFSTLDYLRFSTITGISVTVGYLSGIKPGIKGP 60

Query: 61  SMVTGGLIGVLGGFMYAYQNSAGRLMGFFPNDDEVVKYKKK 102
           SMVTGGLIG++GGFMYAYQNSAGRLMGFFPND EV  Y+K+
Sbjct: 61  SMVTGGLIGLMGGFMYAYQNSAGRLMGFFPNDGEVASYQKR 101

The following BLAST results are available for this feature:

BLAST of Spo16005.1 vs. NCBI nr
BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
BLAST of Spo16005.1 vs. ExPASy Swiss-Prot
BLAST of Spo16005.1 vs. TAIR (Arabidopsis)

BLAST of Spo16005.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902212875\|gb\|KNA17110.1\|	2.7e-51	100.	hypothetical protein SOVF_0830...	[more]
gi\|902225342\|gb\|KNA20036.1\|	5.7e-49	95.1	hypothetical protein SOVF_0561...	[more]
gi\|731329987\|ref\|XP_010675885.1\|	4.9e-48	92.3	PREDICTED: NADH-ubiquinone oxi...	[more]
gi\|351720975\|ref\|NP_001237706.1\|	2.3e-45	91.0	uncharacterized protein LOC100...	[more]
gi\|1009107319\|ref\|XP_015879124.1\|	2.3e-45	92.0	PREDICTED: NADH-ubiquinone oxi...	[more]

BLAST of Spo16005.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RCB4_SPIOL	1.9e-51	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9RKJ6_SPIOL	4.0e-49	95.1	Uncharacterized protein OS=Spi...	[more]
A0A0J8CLI3_BETVU	3.4e-48	92.3	Uncharacterized protein OS=Bet...	[more]
C6SY14_SOYBN	1.6e-45	91.0	Uncharacterized protein OS=Gly...	[more]
A0A0B2S936_GLYSO	1.6e-45	91.0	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo16005.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo16005.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT4G16450.1	1.6e-44	83.1	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019721	NADH-ubiquinone oxidoreductase, 21kDa subunit, N-terminal	PFAM	PF10785	NADH-u_ox-rdase	coord: 11..89 score: 2.5
None	No IPR available	PANTHER	PTHR34062	FAMILY NOT NAMED	coord: 1..104 score: 2.0
None	No IPR available	PANTHER	PTHR34062:SF1	SUBFAMILY NOT NAMED	coord: 1..104 score: 2.0

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009853	photorespiration
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005747	mitochondrial respiratory chain complex I