Spo15822.1 (mRNA)

Overview
NameSpo15822.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_52838 : 2 .. 759 (+)
Sequence length657
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTATTTCCCTGTCTAGATCAGTGGTGGCTGTTCCTGCATATTCAACTCTCACAATTTCTGTAGAAGTATGGGATGGTGCTAAGAATGAGATAGTTTTCGGGGGAAGTTGTGAGTTTGAAACTAATAACCATAGCAGGGAGCAAGACATCATTCGTGGTCCAGATTGTTTACATGCTCAAGTGTTTACTGAATGGAGGGAACCATTTATGCTGGATAAATCATATAACAAAATGGATAGGTTGGGATTGAACAATGTACGTCACTTCTCAATCCCGGTATGTTTTTTTTTCACTTGTGCTTTCTCATTTTTCTTAGTATTTGATGATGTACTTTTTTCTGCTTTAAATTGACCTTTCTTTGTCACTTGTATGTTCAGCCCAACCCAGGAGAGTTCACGGCACATCGAGAAGTCGAGGTGTTCTCTATATTTATAGGTCGGCCAAATGAGCAGAAGTTAAGTCTCCATGGCATGGTTAACTTTTACGGCAGTTGGGGTCCGATTAATATCTTTGAAAGGGACAAGAATGATCCCTATATATTGTACCNTTTTTTGGTATATCAGTAAACCTTGAAGATGTTGAGGGTCATGTGTCGATCAAGGGAGACGTGGCGTCGAGTACTGGATTGAATTACCGTTTGAGTCCTTGGCAAGATTGCCTCTTGTGTTCTGTTATTAAAGGTGCAAATCATCATTGCTTTGCATCTGTTCATTACACGGTCTTCTCGTTTGCAGTTCACTGTGTACTTAAAGTTGGTT

mRNA sequence

CCTATTTCCCTGTCTAGATCAGTGGTGGCTGTTCCTGCATATTCAACTCTCACAATTTCTGTAGAAGTATGGGATGGTGCTAAGAATGAGATAGTTTTCGGGGGAAGTTGTGAGTTTGAAACTAATAACCATAGCAGGGAGCAAGACATCATTCGTGGTCCAGATTGTTTACATGCTCAAGTGTTTACTGAATGGAGGGAACCATTTATGCTGGATAAATCATATAACAAAATGGATAGGTTGGGATTGAACAATGTACGTCACTTCTCAATCCCGCCCAACCCAGGAGAGTTCACGGCACATCGAGAAGTCGAGGTGTTCTCTATATTTATAGGTCGGCCAAATGAGCAGAAGTTAAGTCTCCATGGCATGGTTAACTTTTACGGCAGTTGGGGTCCGATTAATATCTTTGAAAGGGACAAGAATGATCCCTATATATTGTACCNTTTTTTGGTATATCAGTAAACCTTGAAGATGTTGAGGGTCATGTGTCGATCAAGGGAGACGTGGCGTCGAGTACTGGATTGAATTACCGTTTGAGTCCTTGGCAAGATTGCCTCTTGTGTTCTGTTATTAAAGGTGCAAATCATCATTGCTTTGCATCTGTTCATTACACGGTCTTCTCGTTTGCAGTTCACTGTGTACTTAAAGTTGGTT

Coding sequence (CDS)

CCTATTTCCCTGTCTAGATCAGTGGTGGCTGTTCCTGCATATTCAACTCTCACAATTTCTGTAGAAGTATGGGATGGTGCTAAGAATGAGATAGTTTTCGGGGGAAGTTGTGAGTTTGAAACTAATAACCATAGCAGGGAGCAAGACATCATTCGTGGTCCAGATTGTTTACATGCTCAAGTGTTTACTGAATGGAGGGAACCATTTATGCTGGATAAATCATATAACAAAATGGATAGGTTGGGATTGAACAATGTACGTCACTTCTCAATCCCGCCCAACCCAGGAGAGTTCACGGCACATCGAGAAGTCGAGGTGTTCTCTATATTTATAGGTCGGCCAAATGAGCAGAAGTTAAGTCTCCATGGCATGGTTAACTTTTACGGCAGTTGGGGTCCGATTAATATCTTTGAAAGGGACAAGAATGATCCCTATATATTGTACCNTTTTTTGGTATATCAGTAA

Protein sequence

PISLSRSVVAVPAYSTLTISVEVWDGAKNEIVFGGSCEFETNNHSREQDIIRGPDCLHAQVFTEWREPFMLDKSYNKMDRLGLNNVRHFSIPPNPGEFTAHREVEVFSIFIGRPNEQKLSLHGMVNFYGSWGPINIFERDKNDPYILYXFLVYQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo15822Spo15822gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo15822.1Spo15822.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo15822.1.exon.1Spo15822.1.exon.1exon
Spo15822.1.exon.2Spo15822.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo15822.1.CDS.1Spo15822.1.CDS.1CDS
Spo15822.1.CDS.2Spo15822.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo15822.1.utr3p.1Spo15822.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo15822.1 vs. NCBI nr
Match: gi|902178566|gb|KNA09165.1| (hypothetical protein SOVF_156040 [Spinacia oleracea])

HSP 1 Score: 248.4 bits (633), Expect = 7.900e-63
Identity = 119/148 (80.41%), Postives = 124/148 (83.78%), Query Frame = 1 

		  

Query: 1   PISLSRSVVAVPAYSTLTISVEVWDGAKNEIVFGGSCEFETNNHSREQDIIRGPDCLHAQ 60
           PISLSRSV                    NEIVFGGSCEFET+N+SREQDIIRGPDCLHAQ
Sbjct: 158 PISLSRSV--------------------NEIVFGGSCEFETDNYSREQDIIRGPDCLHAQ 217

Query: 61  VFTEWREPFMLDKSYNKMDRLGLNNVRHFSIPPNPGEFTAHREVEVFSIFIGRPNEQKLS 120
           VFTEWREPFMLDKSYNKMDRLGLN VRHFSI PNPGEFTAHREVEVFSIF+GRPNEQKLS
Sbjct: 218 VFTEWREPFMLDKSYNKMDRLGLNTVRHFSILPNPGEFTAHREVEVFSIFVGRPNEQKLS 277

Query: 121 LHGMVNFYGSWGPINIFERDKNDPYILY 149
           LHGMVNFY +WGPINIF RDKN+PYILY
Sbjct: 278 LHGMVNFYSNWGPINIFGRDKNEPYILY 285
[Close]
BLAST of Spo15822.1 vs. NCBI nr
Match: gi|902136507|gb|KNA04462.1| (hypothetical protein SOVF_199510 [Spinacia oleracea])

HSP 1 Score: 119.8 bits (299), Expect = 4.200e-24
Identity = 69/147 (46.94%), Postives = 89/147 (60.54%), Query Frame = 1 

		  

Query: 1   PISLSRSVVAVPAYSTLTISVEVWDGAKNEIVFGGSCEFETNNHSREQDIIRGPDCLHAQ 60
           P++LSRSVVAVPAYS+LTI VE+WD A  +++  GS +FET NH R +  I G   L A+
Sbjct: 258 PLALSRSVVAVPAYSSLTIQVELWDFATKKLIVQGSNKFETTNH-RAEKTITGLSNLDAE 317

Query: 61  VFTEWREPFMLDKSYNKMDRLGLNNVRHFSIPPNPGEFTAHREVEVFSIFIGRPNEQKLS 120
           V   W +PF LD   + + +  +N   H         F A   VEVFSIFIGR  ++ L 
Sbjct: 318 VTIVWEKPFKLD---DPVAKKSINCGIH-------SHFWAPHAVEVFSIFIGRETDKPLR 377

Query: 121 LHGMVNFYGSWGPINIFERDKNDPYIL 148
           LHGMV F G  G   +F R K+DP+IL
Sbjct: 378 LHGMVAFGGGPGGFKLFNRCKDDPFIL 393
[Close]
BLAST of Spo15822.1 vs. NCBI nr
Match: gi|1021050560|gb|KZN08338.1| (hypothetical protein DCAR_000884 [Daucus carota subsp. sativus])

HSP 1 Score: 85.9 bits (211), Expect = 6.800e-14
Identity = 50/146 (34.25%), Postives = 82/146 (56.16%), Query Frame = 1 

		  

Query: 2   ISLSRSVVAVPAYSTLTISVEVWDGAKNEIVFGGSCEFETNNHSREQDIIRGPDCLHAQV 61
           I LS+ +V VPAYS L IS+E+     ++ V  GS  FE +N       +RG +  +  V
Sbjct: 341 IVLSKDLVVVPAYSDLEISLELKGFEDDDFVVKGSVCFEPSNFHAGWKQVRGRNGCYVDV 400

Query: 62  FTEWREPFMLDKSYNKMDRLGLNNVRHFSIPPNPGEFTAHREVEVFSIFIGRPNEQKLSL 121
              W++P +L++ + K D +       F +   P    +H  +EVFS+FI RPN +++++
Sbjct: 401 QVTWQKPSLLNRPWCKEDTIS----SAFYMGDGPITLASHL-LEVFSLFIARPNGKEVNM 460

Query: 122 HGMVNFYGSWGPINIFERDKNDPYIL 148
           +G V+ Y + G  NIF R+K+D Y +
Sbjct: 461 YGSVDIYCTDGWCNIFCREKDDAYFM 481
[Close]
BLAST of Spo15822.1 vs. NCBI nr
Match: gi|1021054195|gb|KZN11973.1| (hypothetical protein DCAR_004629 [Daucus carota subsp. sativus])

HSP 1 Score: 85.9 bits (211), Expect = 6.800e-14
Identity = 53/147 (36.05%), Postives = 84/147 (57.14%), Query Frame = 1 

		  

Query: 2   ISLSRSVVAVPAYSTLTISVEVWDGAKNEIVFGGSCEFETNNHSREQDIIRGPDCLHAQV 61
           I LS+S++ VPAYS L IS+++     + I+  G+  FE +N+S ++  IRG +  +  V
Sbjct: 264 IGLSKSLLPVPAYSPLEISLDL--RGNDGIIVNGTASFEASNYSGKK-YIRGLNGFYVWV 323

Query: 62  FTEWREPFMLDKSYNKMDRL-GLNNVRHFSIPPNPGEFTAHREVEVFSIFIGRPNEQKLS 121
             +W EP +L +     DR+ G  +V H+          A + +EVFS+FI RPNE++++
Sbjct: 324 HVDWCEPSLLTRLSCNEDRIDGFCSVPHWP------SLYASQLLEVFSLFISRPNEEEVN 383

Query: 122 LHGMVNFYGSWGPINIFERDKNDPYIL 148
           L+G VN   S G  +IF   K + Y L
Sbjct: 384 LYGSVNILDSRGWCSIFSCSKKEAYCL 401
[Close]
BLAST of Spo15822.1 vs. NCBI nr
Match: gi|902227547|gb|KNA20738.1| (hypothetical protein SOVF_049520 [Spinacia oleracea])

HSP 1 Score: 66.2 bits (160), Expect = 5.600e-8
Identity = 54/176 (30.68%), Postives = 76/176 (43.18%), Query Frame = 1 

		  

Query: 2   ISLSRSVVAVPAYSTLTISVEVWD-GAKNEIVFGGSCEFETNNHSREQDI-IRGPD---- 61
           I LSRS+V VPAYS+L I V++WD G K + V  G+ EF          + ++G D    
Sbjct: 253 IGLSRSLVVVPAYSSLVIEVDLWDHGTKLQFV-NGTAEFRARRCGNGDCMNLQGQDCVLK 312

Query: 62  ----------CLHAQVFTEWREPFMLDKSYNKMDRLGLNNV-----RHFSI------PPN 121
                     CL   +    RE  + DK   K  R            HF I         
Sbjct: 313 LRVTWVHEDVCLSPPMIQNKRELAVTDKRKQKKTRTKFQKSPEPLRGHFPIIKGCASSVK 372

Query: 122 PGEFTAHREVEVFSIFIGRPNEQKLSLHGMVNFYGSWGPINIFERDKNDPYILYXF 151
           P        +EVFS+FIG+ N +   L+G +    + G + IF+R+K+ P  L  F
Sbjct: 373 PKRLCKFPMLEVFSVFIGQNNGKSAGLYGKIEVLCALGRLRIFKREKDMPQQLSPF 427
[Close]
BLAST of Spo15822.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QPI2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_156040 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.500e-63
Identity = 119/148 (80.41%), Postives = 124/148 (83.78%), Query Frame = 1 

		  

Query: 1   PISLSRSVVAVPAYSTLTISVEVWDGAKNEIVFGGSCEFETNNHSREQDIIRGPDCLHAQ 60
           PISLSRSV                    NEIVFGGSCEFET+N+SREQDIIRGPDCLHAQ
Sbjct: 158 PISLSRSV--------------------NEIVFGGSCEFETDNYSREQDIIRGPDCLHAQ 217

Query: 61  VFTEWREPFMLDKSYNKMDRLGLNNVRHFSIPPNPGEFTAHREVEVFSIFIGRPNEQKLS 120
           VFTEWREPFMLDKSYNKMDRLGLN VRHFSI PNPGEFTAHREVEVFSIF+GRPNEQKLS
Sbjct: 218 VFTEWREPFMLDKSYNKMDRLGLNTVRHFSILPNPGEFTAHREVEVFSIFVGRPNEQKLS 277

Query: 121 LHGMVNFYGSWGPINIFERDKNDPYILY 149
           LHGMVNFY +WGPINIF RDKN+PYILY
Sbjct: 278 LHGMVNFYSNWGPINIFGRDKNEPYILY 285
[Close]
BLAST of Spo15822.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QB02_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_199510 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.000e-24
Identity = 69/147 (46.94%), Postives = 89/147 (60.54%), Query Frame = 1 

		  

Query: 1   PISLSRSVVAVPAYSTLTISVEVWDGAKNEIVFGGSCEFETNNHSREQDIIRGPDCLHAQ 60
           P++LSRSVVAVPAYS+LTI VE+WD A  +++  GS +FET NH R +  I G   L A+
Sbjct: 258 PLALSRSVVAVPAYSSLTIQVELWDFATKKLIVQGSNKFETTNH-RAEKTITGLSNLDAE 317

Query: 61  VFTEWREPFMLDKSYNKMDRLGLNNVRHFSIPPNPGEFTAHREVEVFSIFIGRPNEQKLS 120
           V   W +PF LD   + + +  +N   H         F A   VEVFSIFIGR  ++ L 
Sbjct: 318 VTIVWEKPFKLD---DPVAKKSINCGIH-------SHFWAPHAVEVFSIFIGRETDKPLR 377

Query: 121 LHGMVNFYGSWGPINIFERDKNDPYIL 148
           LHGMV F G  G   +F R K+DP+IL
Sbjct: 378 LHGMVAFGGGPGGFKLFNRCKDDPFIL 393
[Close]
BLAST of Spo15822.1 vs. UniProtKB/TrEMBL
Match: A0A162BAG6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_004629 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.700e-14
Identity = 53/147 (36.05%), Postives = 84/147 (57.14%), Query Frame = 1 

		  

Query: 2   ISLSRSVVAVPAYSTLTISVEVWDGAKNEIVFGGSCEFETNNHSREQDIIRGPDCLHAQV 61
           I LS+S++ VPAYS L IS+++     + I+  G+  FE +N+S ++  IRG +  +  V
Sbjct: 264 IGLSKSLLPVPAYSPLEISLDL--RGNDGIIVNGTASFEASNYSGKK-YIRGLNGFYVWV 323

Query: 62  FTEWREPFMLDKSYNKMDRL-GLNNVRHFSIPPNPGEFTAHREVEVFSIFIGRPNEQKLS 121
             +W EP +L +     DR+ G  +V H+          A + +EVFS+FI RPNE++++
Sbjct: 324 HVDWCEPSLLTRLSCNEDRIDGFCSVPHWP------SLYASQLLEVFSLFISRPNEEEVN 383

Query: 122 LHGMVNFYGSWGPINIFERDKNDPYIL 148
           L+G VN   S G  +IF   K + Y L
Sbjct: 384 LYGSVNILDSRGWCSIFSCSKKEAYCL 401
[Close]
BLAST of Spo15822.1 vs. UniProtKB/TrEMBL
Match: A0A166FYJ5_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_000884 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 4.700e-14
Identity = 50/146 (34.25%), Postives = 82/146 (56.16%), Query Frame = 1 

		  

Query: 2   ISLSRSVVAVPAYSTLTISVEVWDGAKNEIVFGGSCEFETNNHSREQDIIRGPDCLHAQV 61
           I LS+ +V VPAYS L IS+E+     ++ V  GS  FE +N       +RG +  +  V
Sbjct: 341 IVLSKDLVVVPAYSDLEISLELKGFEDDDFVVKGSVCFEPSNFHAGWKQVRGRNGCYVDV 400

Query: 62  FTEWREPFMLDKSYNKMDRLGLNNVRHFSIPPNPGEFTAHREVEVFSIFIGRPNEQKLSL 121
              W++P +L++ + K D +       F +   P    +H  +EVFS+FI RPN +++++
Sbjct: 401 QVTWQKPSLLNRPWCKEDTIS----SAFYMGDGPITLASHL-LEVFSLFIARPNGKEVNM 460

Query: 122 HGMVNFYGSWGPINIFERDKNDPYIL 148
           +G V+ Y + G  NIF R+K+D Y +
Sbjct: 461 YGSVDIYCTDGWCNIFCREKDDAYFM 481
[Close]
BLAST of Spo15822.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMM7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_049520 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.900e-8
Identity = 54/176 (30.68%), Postives = 76/176 (43.18%), Query Frame = 1 

		  

Query: 2   ISLSRSVVAVPAYSTLTISVEVWD-GAKNEIVFGGSCEFETNNHSREQDI-IRGPD---- 61
           I LSRS+V VPAYS+L I V++WD G K + V  G+ EF          + ++G D    
Sbjct: 253 IGLSRSLVVVPAYSSLVIEVDLWDHGTKLQFV-NGTAEFRARRCGNGDCMNLQGQDCVLK 312

Query: 62  ----------CLHAQVFTEWREPFMLDKSYNKMDRLGLNNV-----RHFSI------PPN 121
                     CL   +    RE  + DK   K  R            HF I         
Sbjct: 313 LRVTWVHEDVCLSPPMIQNKRELAVTDKRKQKKTRTKFQKSPEPLRGHFPIIKGCASSVK 372

Query: 122 PGEFTAHREVEVFSIFIGRPNEQKLSLHGMVNFYGSWGPINIFERDKNDPYILYXF 151
           P        +EVFS+FIG+ N +   L+G +    + G + IF+R+K+ P  L  F
Sbjct: 373 PKRLCKFPMLEVFSVFIGQNNGKSAGLYGKIEVLCALGRLRIFKREKDMPQQLSPF 427
The following BLAST results are available for this feature:
BLAST of Spo15822.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902178566|gb|KNA09165.1|7.9e-6380.4hypothetical protein SOVF_1560... [more]
gi|902136507|gb|KNA04462.1|4.2e-2446.9hypothetical protein SOVF_1995... [more]
gi|1021050560|gb|KZN08338.1|6.8e-1434.2hypothetical protein DCAR_0008... [more]
gi|1021054195|gb|KZN11973.1|6.8e-1436.0hypothetical protein DCAR_0046... [more]
gi|902227547|gb|KNA20738.1|5.6e-830.6hypothetical protein SOVF_0495... [more]
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BLAST of Spo15822.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QPI2_SPIOL5.5e-6380.4Uncharacterized protein OS=Spi... [more]
A0A0K9QB02_SPIOL3.0e-2446.9Uncharacterized protein OS=Spi... [more]
A0A162BAG6_DAUCA4.7e-1436.0Uncharacterized protein OS=Dau... [more]
A0A166FYJ5_DAUCA4.7e-1434.2Uncharacterized protein OS=Dau... [more]
A0A0K9RMM7_SPIOL3.9e-830.6Uncharacterized protein OS=Spi... [more]
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BLAST of Spo15822.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo15822.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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