Spo15782.1 (mRNA) | SpinachBase

Overview


Name	Spo15782.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	RNA helicase family protein
Location	SpoScf_03789 : 1409 .. 5752 (+)
Sequence length	1595

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCTGATTTTGGAGATATTTCAGAGTTTCATTACCTGGTATTTTTGGAGGAAGCTTCAATTTAATTTTATTATTTTCCATTGAGTTTGGGGAAGCGAAGCCATGGGAGAGTCGTCGAACTACCTAGTATCGGAGCTCTGATTCACTACCAATTACCTCGAATTTAATTGTAAGTTTCTCAACTTCTTGTAGATTCGTTCCATTAATTGATTTTCAGTTTTCCTCTGTTAATTTTGTGCTTATTGCGCTAATCGTCGTCGTCAAATGTTACATTAGGGTTTTGCTTTTGAGTGTAGACTTTGATTGATTTGGGCGTTTATTTTATTTATTTTTTGTACTTTTTTGCATTTAGCTTGTAAATGTTCCGATTTGTCAGCTTAGGTTTTTCTTGTGAGTTTGAATATTGATTCATTTGTGCGTTTAATTTGTTTTTAATTTCGTTCATTTAGCTTGTTATGCCGTGTTTCGCCGTATCGTCAGCCTAGGGATTTGTTTGTTGAGTGTGAATTTTGATTGATTAGTGCATTTAATTTCTTTGGGTCTGCTGCAATTTTAGTTCCGGTTGTGATTGTTTGCAGGTGTTTTTTAATCTGACCTTGTAAACCTCTGCCTAAAGCCTAAAACCCATCAAGTTCCTCCACTATAGAATTGCTCCGTCGATGGGGAAAGGCGAGATGGAGCAGCTGACCTTTGAATTGAACCATGATTCTTCAGTTTGTTGCTTCACCTACGGCAAGGTAATCTCTCTTTTCGAATTGTTCATTTCCGTCTAGGGTCTTGTCTGCATTGGTTTGGGGGTTTTTCTAAATCCCTAATTTCTTCAACTTTTTGATTAATGGTATTTTTGTTGTTTTTTGTTTATTTAATGCTATTTCTANCCCTAATTTCTTCAACTTTTTGATTAATGGTATTTTTGTTGTTTTTTGTTTATTTAATGCTATTTCTATCGGTTTTGGGGTCAAACTGGTTAAGGCTATTTGGAATTCACTCGATGTTTATTTGTTTGATTTTCATATATTTGAATATATCCCGTGCAATTGGGTTGATTCATTCTCAAAGTTTTAGTTCTTTGAGNCCCTAATTTCTTCAACTTTTTGATTAATGGTATTTTTGTTGTTTTTTGTTTATTTAATGCTATTTCTGTCGGTTTTGGGGTCAAACTGGTTAAGGCTATTTGGAATTCACTCGATGTTTATTTGTTTGATTTTCATATATTTGAATATATCCCGTGCAATTGGGTTGATTCATTCTCAAAGTTTTAGTTCTTTGAGNATTTTCATATATTTGAATATATCCCGTGCAATTGGGTTGATTCATTCTCAAAGTTTTAGTTCTTTGAGATCTGATTTTTTTATGGTTGATTTTATTTTTTTGTAATAAGCTATTCTCCTAAAATTAATTCATCAGACCACCATATTTTACTAGTTTAATAATTGAGGTGCTTAATTGAAAGCAGTCAAGGGATTGTGTAATTGGAGAATTCATTGACAATGACTGTTAGTGTGGAACTTTCAAAGGTTTTGGGTTGTGTTGATGTAACTAGATGTCTATTTGATCTTAGAACTATCGTGTTAGTCTCATGGTCTGAAAATTAGGTGTTTACCACATCAGATTTGTTTGTCTGCAACTTTGCTTAGATGATCTGTTCAGTGCTCATCCCGTGATTCTATCGTAATAGCTTTGGATCTTTTTCCGCTTGTTTGTTCTGTAAACTTCAATGCTATGCGGTGTAATTTATTATGGTAAAATATCATCATTCAGACCTCTCATATTATCACTAATTTGGACTGATTCATATCACTTTCTGAACTGAAGAAATAGCCTTGATGGTGTTTAATCTTCCTGCGTTCTTTGAACTGTTATAATCTTTGCTAGAGTTTTAATATTTTTTGACCTAATCTTCATTATGGTTGATAAGATAACAGGGACGAGGTCGTGCTGGTAGAGTGCAGCCTGGAGTTTGTTATAGGCTATATCCAAAACTAGTTTATGATGCAATGCCTCAGTATCAGCTACCAGAAATTCTTCGGACACCTTTGCAAAAACTTTGTTTAAACATAAAGAGTTTGCAACTTGAAACTGTTGGGTCATTCTTAGCAAAAGCACTTCAGCCTCCAGATTCTCTCTCTGTCCAAAATGCTATTGAACTTCTGAAGACAATTGGCGCTTTAGATGAAAGGAAAGACCTCACTCCTCTTGGTATGTAAAATGTTTGCCTTTATGTCTTTCCCTTACATGTGTGTCTGTGGAATCATATCTCTGGAGGGTGCATATCACATAGATAATTGTTAGGGTTCATGCTATGAGATATCAATAGTTTACCTGGATCGTTGAATCAAAAGTTCCTTTCTTTAGTAAGGTGATATGATTCTAAATTTGGGTCTGGTGTGCCACCAAGTTTTCTCTGTCAATTCTAGGCTTTAGGTTTAAATGCAATGAATTAAAATATGAAGAGTTGAAGAAGTGCTCACTAATGACTGACATTAAAGGAATTACGTAATATGCCACCCTAAAATAGATAATGATATTAATTAAAACTAGTTTTAAGCCCGTGCGATGCACAGGATTCTCAATTGTTTTTTAGTCTGAACAACAAACAATATAAACTTTATCCTTTGAATTTCTTAATGTGACACAAAATCTATCACAAAAATCTGGTATAGTTCAAGGTTTATATTTTGTTTTAAAAGTCATTATTTATAAATTTGATCAAATGAATTGATAAACTAATATCTTAAGTCTATTTATTTATGATTATATATGTCATTTGAATTGTGATATTCATCAACAACATTATTGATTTGGAATCACTCATTAGGTATCCAACTACTCTTAGTTTCCCACATATCATGTGTGTTATGTAATTCTCCGTCCCTAATAAAAAAGCAAAATTATACTTAATAACCAGTTGATATTAGTTCAAGCTAGATAATGCCTTTGAATCTCTAATATAAGGAAGACATATGGACATCTAATATTTCGCGGCAAAAAAGCAAAGATGATGGAAGTAGAAGCATCACTGAAAACCTTAAAACTACAACCTTTCAAACTTAAACCATTTAATTTTATTTCAATAAATGTGTAGACATTGAAAGAGCTGATAAGATAGGAAAAAAAATTAACAATATTTAGTCTACAACGACCTTTAAATATATATGTACTTAATTAAATATTAGAATAGATTTTAGTTACAACCTGAAAACCGTGAATTAGGGGCTACTATATTTTTAATTTACCATAAGAAAAATTGCAAAAATAATTGTTTATAAAAAATGTCTACGAAGAAAGCAAAGAAATTATTAAAGTTTAGTCTTCATCGACCTTTAAATATATATGTACTTAATTGAACAGGTCGACATCTCTGCACTCTGCCTTTGGAACCAAATATTGGGAAGATGTTGCTCATGGGGTCGGTTTTCCAATGCCTGAATCCAGCATTGACAATTGCAGCTGCTACAATGCTATTTGCTTAAATGGAGTGCTGACATCATGATTCCTTAGAAATTGTGAGTGGAGCTTGATAAACTTTTGAGCAGGAAGATTGAAGAACCAAGGTTAGACATCACTGCCGAGGGGAAGAGTGTGGTTGCTGCTGTAGTTGAGTTGTTGCACAGTTAAAACTTCAAATACTAGATCTTTATTCCAGACTAGTAGAGTAATTCAAAGACCGACGGTGACTCTGAACAGACTTTCTTCTTAGAATAGACTCTGAACAGACTTTCTTCGGTAAATCTACAGGTATAAGGAACAGACACAATTATTCAGTGACCATATAGAATAGAAACAGATAATTAACTTTTGTCCATAAACAACACTTTGTATTCTAGATTTTGTGTGGTTATATAATTTTTGCAGAGGCCATAATTTCTTTAGATGTAGTTTGGTGAATAGCATCAGTTTGCCGTTTGGGACTTTGTTAGCTGTTAGATTGTATGTCGAGATAACCATACGGAGGAATAAGTAGCTGGTGAGCAGAAGATATACAATATTTTTTTCTCTTTGGTTAGCAAAAGAGTTGTTTTTCCCACTTTGGTGAGTACAGGAGTTATTGTAACTATAATTAACCATATTGTAGAGTCGTAGGCAAATAGTGGCTACTTTTTCTTAACTTGTAGCATTCATATTTCTGTTATTCTTTCTTGAGCTTAGCTGTGATTTTATCATGGAACCCTGCGCTGTGCTGCGCTGAGCCGCTGTTAGCCTGCTACATCACTGCAGGTTCTTCCTATTTACCTTCTCTGGCATGGTATGATGAGTCAGGTTGATTGAGTTATGCTTGATCTTTTACCATTGTGTCAACTTATTTAGGGAAAACTATGGGGTCATGTATATCTCAGCCGCCCA

mRNA sequence

CACCTGATTTTGGAGATATTTCAGAGTTTCATTACCTGGTATTTTTGGAGGAAGCTTCAATTTAATTTTATTATTTTCCATTGAGTTTGGGGAAGCGAAGCCATGGGAGAGTCGTCGAACTACCTAGTATCGGAGCTCTGATTCACTACCAATTACCTCGAATTTAATTGTGTTTTTTAATCTGACCTTGTAAACCTCTGCCTAAAGCCTAAAACCCATCAAGTTCCTCCACTATAGAATTGCTCCGTCGATGGGGAAAGGCGAGATGGAGCAGCTGACCTTTGAATTGAACCATGATTCTTCAGTTTGTTGCTTCACCTACGGCAAGGGACGAGGTCGTGCTGGTAGAGTGCAGCCTGGAGTTTGTTATAGGCTATATCCAAAACTAGTTTATGATGCAATGCCTCAGTATCAGCTACCAGAAATTCTTCGGACACCTTTGCAAAAACTTTGTTTAAACATAAAGAGTTTGCAACTTGAAACTGTTGGGTCATTCTTAGCAAAAGCACTTCAGCCTCCAGATTCTCTCTCTGTCCAAAATGCTATTGAACTTCTGAAGACAATTGGCGCTTTAGATGAAAGGAAAGACCTCACTCCTCTTGGTCGACATCTCTGCACTCTGCCTTTGGAACCAAATATTGGGAAGATGTTGCTCATGGGGTCGGTTTTCCAATGCCTGAATCCAGCATTGACAATTGCAGCTGCTACAATGCTATTTGCTTAAATGGAGTGCTGACATCATGATTCCTTAGAAATTGTGAGTGGAGCTTGATAAACTTTTGAGCAGGAAGATTGAAGAACCAAGGTTAGACATCACTGCCGAGGGGAAGAGTGTGGTTGCTGCTGTAGTTGAGTTGTTGCACAGTTAAAACTTCAAATACTAGATCTTTATTCCAGACTAGTAGAGTAATTCAAAGACCGACGGTGACTCTGAACAGACTTTCTTCTTAGAATAGACTCTGAACAGACTTTCTTCGGTAAATCTACAGGTATAAGGAACAGACACAATTATTCAGTGACCATATAGAATAGAAACAGATAATTAACTTTTGTCCATAAACAACACTTTGTATTCTAGATTTTGTGTGGTTATATAATTTTTGCAGAGGCCATAATTTCTTTAGATGTAGTTTGGTGAATAGCATCAGTTTGCCGTTTGGGACTTTGTTAGCTGTTAGATTGTATGTCGAGATAACCATACGGAGGAATAAGTAGCTGGTGAGCAGAAGATATACAATATTTTTTTCTCTTTGGTTAGCAAAAGAGTTGTTTTTCCCACTTTGGTGAGTACAGGAGTTATTGTAACTATAATTAACCATATTGTAGAGTCGTAGGCAAATAGTGGCTACTTTTTCTTAACTTGTAGCATTCATATTTCTGTTATTCTTTCTTGAGCTTAGCTGTGATTTTATCATGGAACCCTGCGCTGTGCTGCGCTGAGCCGCTGTTAGCCTGCTACATCACTGCAGGTTCTTCCTATTTACCTTCTCTGGCATGGTATGATGAGTCAGGTTGATTGAGTTATGCTTGATCTTTTACCATTGTGTCAACTTATTTAGGGAAAACTATGGGGTCATGTATATCTCAGCCGCCCA

Coding sequence (CDS)

ATGGGGAAAGGCGAGATGGAGCAGCTGACCTTTGAATTGAACCATGATTCTTCAGTTTGTTGCTTCACCTACGGCAAGGGACGAGGTCGTGCTGGTAGAGTGCAGCCTGGAGTTTGTTATAGGCTATATCCAAAACTAGTTTATGATGCAATGCCTCAGTATCAGCTACCAGAAATTCTTCGGACACCTTTGCAAAAACTTTGTTTAAACATAAAGAGTTTGCAACTTGAAACTGTTGGGTCATTCTTAGCAAAAGCACTTCAGCCTCCAGATTCTCTCTCTGTCCAAAATGCTATTGAACTTCTGAAGACAATTGGCGCTTTAGATGAAAGGAAAGACCTCACTCCTCTTGGTCGACATCTCTGCACTCTGCCTTTGGAACCAAATATTGGGAAGATGTTGCTCATGGGGTCGGTTTTCCAATGCCTGAATCCAGCATTGACAATTGCAGCTGCTACAATGCTATTTGCTTAA

Protein sequence

MGKGEMEQLTFELNHDSSVCCFTYGKGRGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKALQPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPALTIAAATMLFA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo15782	Spo15782	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo15782.1	Spo15782.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo15782.1.exon.1	Spo15782.1.exon.1	exon
Spo15782.1.exon.2	Spo15782.1.exon.2	exon
Spo15782.1.exon.3	Spo15782.1.exon.3	exon
Spo15782.1.exon.4	Spo15782.1.exon.4	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo15782.1.utr5p.1	Spo15782.1.utr5p.1	five_prime_UTR
Spo15782.1.utr5p.2	Spo15782.1.utr5p.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo15782.1.CDS.1	Spo15782.1.CDS.1	CDS
Spo15782.1.CDS.2	Spo15782.1.CDS.2	CDS
Spo15782.1.CDS.3	Spo15782.1.CDS.3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo15782.1.utr3p.1	Spo15782.1.utr3p.1	three_prime_UTR

Homology

[Close]

BLAST of Spo15782.1 vs. NCBI nr
Match: gi|902148053|gb|KNA05207.1| (hypothetical protein SOVF_192520 [Spinacia oleracea])

HSP 1 Score: 240.7 bits (613), Expect = 1.700e-60
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRVQPGVCYRLYPKLVYDAM QYQLPEILRTPLQ+LCLNIKSLQL TVGSFLAKAL
Sbjct: 667 RGRAGRVQPGVCYRLYPKLVYDAMLQYQLPEILRTPLQELCLNIKSLQLGTVGSFLAKAL 726

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           QPPDSLSVQNAIELLKTIGALDER+DLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL
Sbjct: 727 QPPDSLSVQNAIELLKTIGALDEREDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 786

Query: 148 TIAAA 153
           TIAAA
Sbjct: 787 TIAAA 791

[Close]

BLAST of Spo15782.1 vs. NCBI nr
Match: gi|731333083|ref|XP_010677543.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 238.0 bits (606), Expect = 1.100e-59
Identity = 117/125 (93.60%), Postives = 123/125 (98.40%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRV+PGVCYRLYPKLVYDAMPQYQLPEILRTPLQ+LCLNIKSLQL  VGSFLAKAL
Sbjct: 670 RGRAGRVRPGVCYRLYPKLVYDAMPQYQLPEILRTPLQELCLNIKSLQLGAVGSFLAKAL 729

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           QPPDSL+VQNAIELLKTIGALDER++LTPLGRHLCTLPLEPNIGKMLLMGS+FQCLNPAL
Sbjct: 730 QPPDSLAVQNAIELLKTIGALDEREELTPLGRHLCTLPLEPNIGKMLLMGSIFQCLNPAL 789

Query: 148 TIAAA 153
           TIAAA
Sbjct: 790 TIAAA 794

[Close]

BLAST of Spo15782.1 vs. NCBI nr
Match: gi|731333085|ref|XP_010677544.1| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 238.0 bits (606), Expect = 1.100e-59
Identity = 117/125 (93.60%), Postives = 123/125 (98.40%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRV+PGVCYRLYPKLVYDAMPQYQLPEILRTPLQ+LCLNIKSLQL  VGSFLAKAL
Sbjct: 472 RGRAGRVRPGVCYRLYPKLVYDAMPQYQLPEILRTPLQELCLNIKSLQLGAVGSFLAKAL 531

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           QPPDSL+VQNAIELLKTIGALDER++LTPLGRHLCTLPLEPNIGKMLLMGS+FQCLNPAL
Sbjct: 532 QPPDSLAVQNAIELLKTIGALDEREELTPLGRHLCTLPLEPNIGKMLLMGSIFQCLNPAL 591

Query: 148 TIAAA 153
           TIAAA
Sbjct: 592 TIAAA 596

[Close]

BLAST of Spo15782.1 vs. NCBI nr
Match: gi|778684495|ref|XP_004136518.2| (PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Cucumis sativus])

HSP 1 Score: 226.5 bits (576), Expect = 3.300e-56
Identity = 110/125 (88.00%), Postives = 122/125 (97.60%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRVQPGVCYRLYPK+++DAM QYQLPEILRTPLQ+LCL+IKSLQL TVGSFLA+AL
Sbjct: 652 RGRAGRVQPGVCYRLYPKIIHDAMLQYQLPEILRTPLQELCLHIKSLQLGTVGSFLAQAL 711

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           QPPDSL+VQNAIELLKTIGALD+ ++LTPLGRHLCTLPL+PNIGKMLLMGS+FQCLNPAL
Sbjct: 712 QPPDSLAVQNAIELLKTIGALDDMEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPAL 771

Query: 148 TIAAA 153
           TIAAA
Sbjct: 772 TIAAA 776

[Close]

BLAST of Spo15782.1 vs. NCBI nr
Match: gi|764607374|ref|XP_004303378.2| (PREDICTED: ATP-dependent RNA helicase DHX36 [Fragaria vesca subsp. vesca])

HSP 1 Score: 226.5 bits (576), Expect = 3.300e-56
Identity = 111/125 (88.80%), Postives = 121/125 (96.80%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRVQPGVCYRLYPK+++DAM QYQLPEILRTPLQ+LCL+IKSLQL  VGSFLAKAL
Sbjct: 656 RGRAGRVQPGVCYRLYPKMIHDAMLQYQLPEILRTPLQELCLHIKSLQLGAVGSFLAKAL 715

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           QPPDSL+VQNAIELLKTIGALD+ ++LTPLGRHLCTLPL+PNIGKMLLMGSVFQCLNPAL
Sbjct: 716 QPPDSLAVQNAIELLKTIGALDDMEELTPLGRHLCTLPLDPNIGKMLLMGSVFQCLNPAL 775

Query: 148 TIAAA 153
           TIAAA
Sbjct: 776 TIAAA 780

[Close]

BLAST of Spo15782.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QD58_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_192520 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 1.200e-60
Identity = 121/125 (96.80%), Postives = 123/125 (98.40%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRVQPGVCYRLYPKLVYDAM QYQLPEILRTPLQ+LCLNIKSLQL TVGSFLAKAL
Sbjct: 667 RGRAGRVQPGVCYRLYPKLVYDAMLQYQLPEILRTPLQELCLNIKSLQLGTVGSFLAKAL 726

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           QPPDSLSVQNAIELLKTIGALDER+DLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL
Sbjct: 727 QPPDSLSVQNAIELLKTIGALDEREDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 786

Query: 148 TIAAA 153
           TIAAA
Sbjct: 787 TIAAA 791

[Close]

BLAST of Spo15782.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CHL4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g108570 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 7.600e-60
Identity = 117/125 (93.60%), Postives = 123/125 (98.40%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRV+PGVCYRLYPKLVYDAMPQYQLPEILRTPLQ+LCLNIKSLQL  VGSFLAKAL
Sbjct: 670 RGRAGRVRPGVCYRLYPKLVYDAMPQYQLPEILRTPLQELCLNIKSLQLGAVGSFLAKAL 729

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           QPPDSL+VQNAIELLKTIGALDER++LTPLGRHLCTLPLEPNIGKMLLMGS+FQCLNPAL
Sbjct: 730 QPPDSLAVQNAIELLKTIGALDEREELTPLGRHLCTLPLEPNIGKMLLMGSIFQCLNPAL 789

Query: 148 TIAAA 153
           TIAAA
Sbjct: 790 TIAAA 794

[Close]

BLAST of Spo15782.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LBL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G782660 PE=4 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.300e-56
Identity = 110/125 (88.00%), Postives = 122/125 (97.60%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRVQPGVCYRLYPK+++DAM QYQLPEILRTPLQ+LCL+IKSLQL TVGSFLA+AL
Sbjct: 652 RGRAGRVQPGVCYRLYPKIIHDAMLQYQLPEILRTPLQELCLHIKSLQLGTVGSFLAQAL 711

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           QPPDSL+VQNAIELLKTIGALD+ ++LTPLGRHLCTLPL+PNIGKMLLMGS+FQCLNPAL
Sbjct: 712 QPPDSLAVQNAIELLKTIGALDDMEELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLNPAL 771

Query: 148 TIAAA 153
           TIAAA
Sbjct: 772 TIAAA 776

[Close]

BLAST of Spo15782.1 vs. UniProtKB/TrEMBL
Match: A0A0K9PZ40_ZOSMR (Putative ATP-dependent RNA helicase OS=Zostera marina GN=ZOSMA_147G00190 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.500e-55
Identity = 107/125 (85.60%), Postives = 120/125 (96.00%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRVQPGVCY+LYPKL++DAMPQYQLPEILRTPLQ+LCLNIKSLQL  V SFLAK+L
Sbjct: 659 RGRAGRVQPGVCYKLYPKLIHDAMPQYQLPEILRTPLQELCLNIKSLQLGAVASFLAKSL 718

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           QPPD LSV NAIELLKT+GALD+R++LTPLGRHLCTLPL+PNIGKMLLMGS+FQCL+PAL
Sbjct: 719 QPPDPLSVANAIELLKTVGALDDREELTPLGRHLCTLPLDPNIGKMLLMGSIFQCLDPAL 778

Query: 148 TIAAA 153
           TIAA+
Sbjct: 779 TIAAS 783

[Close]

BLAST of Spo15782.1 vs. UniProtKB/TrEMBL
Match: A0A061EV06_THECC (RNA helicase family protein isoform 2 OS=Theobroma cacao GN=TCM_022976 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.500e-55
Identity = 109/125 (87.20%), Postives = 120/125 (96.00%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRVQPGVCYRLYPKL++DAM  YQLPEILRTPLQ+LCL+IKSLQL TVGSFLAKAL
Sbjct: 624 RGRAGRVQPGVCYRLYPKLIHDAMLDYQLPEILRTPLQELCLHIKSLQLGTVGSFLAKAL 683

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           QPPD LSVQNAIELLKTIGALD+ ++LTPLGRHLCTLPL+PNIGKMLLMG++FQCLNPAL
Sbjct: 684 QPPDPLSVQNAIELLKTIGALDDAEELTPLGRHLCTLPLDPNIGKMLLMGAIFQCLNPAL 743

Query: 148 TIAAA 153
           TIA+A
Sbjct: 744 TIASA 748

[Close]

BLAST of Spo15782.1 vs. ExPASy Swiss-Prot
Match: DEXH1_ARATH (DExH-box ATP-dependent RNA helicase DExH1 OS=Arabidopsis thaliana GN=At2g35920 PE=2 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 8.100e-55
Identity = 100/125 (80.00%), Postives = 121/125 (96.80%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRVQ GVCYRLYPK++YDA PQYQLPEI+RTPLQ+LCL+IKSLQ+ ++GSFLAKAL
Sbjct: 616 RGRAGRVQAGVCYRLYPKVIYDAFPQYQLPEIIRTPLQELCLHIKSLQVGSIGSFLAKAL 675

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           QPPD+L+V+NAIELLKTIGAL++ ++LTPLGRHLCTLP++PNIGKMLL+G++FQC+NPAL
Sbjct: 676 QPPDALAVENAIELLKTIGALNDVEELTPLGRHLCTLPVDPNIGKMLLIGAIFQCVNPAL 735

Query: 148 TIAAA 153
           TIAAA
Sbjct: 736 TIAAA 740

[Close]

BLAST of Spo15782.1 vs. ExPASy Swiss-Prot
Match: DEXH3_ARATH (DExH-box ATP-dependent RNA helicase DExH3 OS=Arabidopsis thaliana GN=At1g48650 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.300e-41
Identity = 77/124 (62.10%), Postives = 101/124 (81.45%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRV PG CY LYP+ VY+A   YQ PE+LRTPLQ LCL IKSL L ++  FL++AL
Sbjct: 691 RGRAGRVMPGECYHLYPRCVYEAFADYQQPELLRTPLQSLCLQIKSLGLGSISEFLSRAL 750

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           QPP++LSVQNA+E LK IGALD+ ++LTPLG++L  LP+EP +GKML++G++F CL+P +
Sbjct: 751 QPPEALSVQNAVEYLKIIGALDDDENLTPLGKNLSMLPVEPKLGKMLILGAIFNCLDPVM 810

Query: 148 TIAA 152
           T+ A
Sbjct: 811 TVVA 814

[Close]

BLAST of Spo15782.1 vs. ExPASy Swiss-Prot
Match: DEXH5_ARATH (DExH-box ATP-dependent RNA helicase DExH5, mitochondrial OS=Arabidopsis thaliana GN=At2g01130 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 8.700e-41
Identity = 80/124 (64.52%), Postives = 98/124 (79.03%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRV+PG CY LYPK VYDA  +YQLPEILRTPL  LCL IKSL L ++  FL++AL
Sbjct: 611 RGRAGRVRPGQCYHLYPKCVYDAFAEYQLPEILRTPLHSLCLQIKSLNLGSISEFLSRAL 670

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           Q P+ L+VQ AI  LK IGALDE +DLT LGR+L  LP+EP +GKML++G++  CL+P L
Sbjct: 671 QSPELLAVQKAIAFLKIIGALDENEDLTTLGRYLSKLPMEPKLGKMLILGAILGCLDPIL 730

Query: 148 TIAA 152
           T+AA
Sbjct: 731 TVAA 734

[Close]

BLAST of Spo15782.1 vs. ExPASy Swiss-Prot
Match: DHX36_MOUSE (ATP-dependent RNA helicase DHX36 OS=Mus musculus GN=Dhx36 PE=1 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 7.400e-32
Identity = 68/125 (54.40%), Postives = 93/125 (74.40%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           +GRAGRVQPG CY LY  L    +  YQLPEILRTPL++LCL IK L+L  +  FL++ +
Sbjct: 593 KGRAGRVQPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLM 652

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
            PP + +V  +I+ L  + ALD++++LTPLG HL  LP+EP+IGKM+L G++F CL+P L
Sbjct: 653 DPPSNEAVVLSIKHLMELSALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVL 712

Query: 148 TIAAA 153
           TIAA+
Sbjct: 713 TIAAS 717

[Close]

BLAST of Spo15782.1 vs. ExPASy Swiss-Prot
Match: DHX36_HUMAN (ATP-dependent RNA helicase DHX36 OS=Homo sapiens GN=DHX36 PE=1 SV=2)

HSP 1 Score: 137.9 bits (346), Expect = 9.600e-32
Identity = 68/125 (54.40%), Postives = 92/125 (73.60%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           +GRAGRVQPG CY LY  L    +  YQLPEILRTPL++LCL IK L+L  +  FL++ +
Sbjct: 600 KGRAGRVQPGHCYHLYNGLRASLLDDYQLPEILRTPLEELCLQIKILRLGGIAYFLSRLM 659

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
            PP + +V  +I  L  + ALD++++LTPLG HL  LP+EP+IGKM+L G++F CL+P L
Sbjct: 660 DPPSNEAVLLSIRHLMELNALDKQEELTPLGVHLARLPVEPHIGKMILFGALFCCLDPVL 719

Query: 148 TIAAA 153
           TIAA+
Sbjct: 720 TIAAS 724

[Close]

BLAST of Spo15782.1 vs. TAIR (Arabidopsis)
Match: AT2G35920.1 (RNA helicase family protein)

HSP 1 Score: 214.5 bits (545), Expect = 4.500e-56
Identity = 100/125 (80.00%), Postives = 121/125 (96.80%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRVQ GVCYRLYPK++YDA PQYQLPEI+RTPLQ+LCL+IKSLQ+ ++GSFLAKAL
Sbjct: 616 RGRAGRVQAGVCYRLYPKVIYDAFPQYQLPEIIRTPLQELCLHIKSLQVGSIGSFLAKAL 675

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           QPPD+L+V+NAIELLKTIGAL++ ++LTPLGRHLCTLP++PNIGKMLL+G++FQC+NPAL
Sbjct: 676 QPPDALAVENAIELLKTIGALNDVEELTPLGRHLCTLPVDPNIGKMLLIGAIFQCVNPAL 735

Query: 148 TIAAA 153
           TIAAA
Sbjct: 736 TIAAA 740

[Close]

BLAST of Spo15782.1 vs. TAIR (Arabidopsis)
Match: AT1G48650.2 (DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 169.9 bits (429), Expect = 1.300e-42
Identity = 77/124 (62.10%), Postives = 101/124 (81.45%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRV PG CY LYP+ VY+A   YQ PE+LRTPLQ LCL IKSL L ++  FL++AL
Sbjct: 691 RGRAGRVMPGECYHLYPRCVYEAFADYQQPELLRTPLQSLCLQIKSLGLGSISEFLSRAL 750

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           QPP++LSVQNA+E LK IGALD+ ++LTPLG++L  LP+EP +GKML++G++F CL+P +
Sbjct: 751 QPPEALSVQNAVEYLKIIGALDDDENLTPLGKNLSMLPVEPKLGKMLILGAIFNCLDPVM 810

Query: 148 TIAA 152
           T+ A
Sbjct: 811 TVVA 814

[Close]

BLAST of Spo15782.1 vs. TAIR (Arabidopsis)
Match: AT2G01130.1 (DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 167.9 bits (424), Expect = 4.900e-42
Identity = 80/124 (64.52%), Postives = 98/124 (79.03%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGRV+PG CY LYPK VYDA  +YQLPEILRTPL  LCL IKSL L ++  FL++AL
Sbjct: 611 RGRAGRVRPGQCYHLYPKCVYDAFAEYQLPEILRTPLHSLCLQIKSLNLGSISEFLSRAL 670

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           Q P+ L+VQ AI  LK IGALDE +DLT LGR+L  LP+EP +GKML++G++  CL+P L
Sbjct: 671 QSPELLAVQKAIAFLKIIGALDENEDLTTLGRYLSKLPMEPKLGKMLILGAILGCLDPIL 730

Query: 148 TIAA 152
           T+AA
Sbjct: 731 TVAA 734

[Close]

BLAST of Spo15782.1 vs. TAIR (Arabidopsis)
Match: AT5G04895.1 (DEA(D/H)-box RNA helicase family protein)

HSP 1 Score: 166.0 bits (419), Expect = 1.900e-41
Identity = 78/124 (62.90%), Postives = 100/124 (80.65%), Query Frame = 1


		  
Query: 28  RGRAGRVQPGVCYRLYPKLVYDAMPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 87
           RGRAGR+ PG CY LYPK VYDA  +YQLPE+LRTPL  LCL IKSLQ+E++  FL+ AL
Sbjct: 652 RGRAGRLFPGECYHLYPKCVYDAFAEYQLPELLRTPLNSLCLQIKSLQVESIAEFLSAAL 711

Query: 88  QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 147
           Q P+SL+VQNAI  LK IGALDE+++LT LG+ L  LP++P +GKML+MG++F+C +P L
Sbjct: 712 QAPESLAVQNAIGFLKMIGALDEKENLTDLGKLLSILPVDPKLGKMLIMGAIFRCFDPIL 771

Query: 148 TIAA 152
           TI +
Sbjct: 772 TIVS 775

[Close]

BLAST of Spo15782.1 vs. TAIR (Arabidopsis)
Match: AT1G58050.1 (RNA helicase family protein)

HSP 1 Score: 126.3 bits (316), Expect = 1.600e-29
Identity = 65/124 (52.42%), Postives = 89/124 (71.77%), Query Frame = 1


		  
Query: 29   GRAGRVQPGVCYRLYPKLVYDA-MPQYQLPEILRTPLQKLCLNIKSLQLETVGSFLAKAL 88
            GRAGRV+PG C+ LY +  ++  M  YQ+PE+LR PL +LCL+IK L L  +  FL+KAL
Sbjct: 996  GRAGRVKPGHCFSLYTRHRFEKLMRPYQVPEMLRVPLVELCLHIKLLGLGQIKPFLSKAL 1055

Query: 89   QPPDSLSVQNAIELLKTIGALDERKDLTPLGRHLCTLPLEPNIGKMLLMGSVFQCLNPAL 148
            +PP   ++ +AI LL  +GAL+  ++LTPLG HL  LP++  IGKMLL G +F CL+P L
Sbjct: 1056 EPPSESAINSAILLLHKVGALEGDEELTPLGHHLAKLPVDLLIGKMLLYGGIFGCLSPIL 1115

Query: 149  TIAA 152
            +IAA
Sbjct: 1116 SIAA 1119

The following BLAST results are available for this feature:

BLAST of Spo15782.1 vs. NCBI nr
BLAST of Spo15782.1 vs. UniProtKB/TrEMBL
BLAST of Spo15782.1 vs. ExPASy Swiss-Prot
BLAST of Spo15782.1 vs. TAIR (Arabidopsis)

BLAST of Spo15782.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902148053\|gb\|KNA05207.1\|	1.7e-60	96.8	hypothetical protein SOVF_1925...	[more]
gi\|731333083\|ref\|XP_010677543.1\|	1.1e-59	93.6	PREDICTED: ATP-dependent RNA h...	[more]
gi\|731333085\|ref\|XP_010677544.1\|	1.1e-59	93.6	PREDICTED: ATP-dependent RNA h...	[more]
gi\|778684495\|ref\|XP_004136518.2\|	3.3e-56	88.0	PREDICTED: ATP-dependent RNA h...	[more]
gi\|764607374\|ref\|XP_004303378.2\|	3.3e-56	88.8	PREDICTED: ATP-dependent RNA h...	[more]

BLAST of Spo15782.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QD58_SPIOL	1.2e-60	96.8	Uncharacterized protein OS=Spi...	[more]
A0A0J8CHL4_BETVU	7.6e-60	93.6	Uncharacterized protein OS=Bet...	[more]
A0A0A0LBL1_CUCSA	2.3e-56	88.0	Uncharacterized protein OS=Cuc...	[more]
A0A0K9PZ40_ZOSMR	1.5e-55	85.6	Putative ATP-dependent RNA hel...	[more]
A0A061EV06_THECC	1.5e-55	87.2	RNA helicase family protein is...	[more]

BLAST of Spo15782.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
DEXH1_ARATH	8.1e-55	80.0	DExH-box ATP-dependent RNA hel...	[more]
DEXH3_ARATH	2.3e-41	62.1	DExH-box ATP-dependent RNA hel...	[more]
DEXH5_ARATH	8.7e-41	64.5	DExH-box ATP-dependent RNA hel...	[more]
DHX36_MOUSE	7.4e-32	54.4	ATP-dependent RNA helicase DHX...	[more]
DHX36_HUMAN	9.6e-32	54.4	ATP-dependent RNA helicase DHX...	[more]

BLAST of Spo15782.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G35920.1	4.5e-56	80.0	RNA helicase family protein	[more]
AT1G48650.2	1.3e-42	62.1	DEA(D/H)-box RNA helicase fami...	[more]
AT2G01130.1	4.9e-42	64.5	DEA(D/H)-box RNA helicase fami...	[more]
AT5G04895.1	1.9e-41	62.9	DEA(D/H)-box RNA helicase fami...	[more]
AT1G58050.1	1.6e-29	52.4	RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007502	Helicase-associated domain	PFAM	PF04408	HA2	coord: 98..153 score: 5.2
IPR007502	Helicase-associated domain	SMART	SM00847	ha2_5	coord: 97..157 score: 7.
IPR027417	P-loop containing nucleoside triphosphate hydrolase	unknown	SSF52540	P-loop containing nucleoside triphosphate hydrolases	coord: 28..152 score: 5.05
None	No IPR available	PANTHER	PTHR18934	ATP-DEPENDENT RNA HELICASE	coord: 28..151 score: 4.1
None	No IPR available	PANTHER	PTHR18934:SF112	DEA(D/H)-BOX RNA HELICASE FAMILY PROTEIN	coord: 28..151 score: 4.1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006499	N-terminal protein myristoylation
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008026	ATP-dependent helicase activity
molecular_function	GO:0003676	nucleic acid binding