Spo14712.1 (mRNA)

Overview
NameSpo14712.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 36122554 .. 36124493 (+)
Sequence length411
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAGTAGAACTTCCTAGGAACTTGGAGTTCCCATGGGACATGGAAAATGGCTTACCTACCCTCCCTTGGTAAGTCACAATTGCCATGTAGGAGTAATTTCCTAGAAAATGTGAATTCCTTATTGCAATGCAACCAAACAAGAGTATACCATTTCCTAGGAAGTTCACAAAGGAAGTAACTTCCCACAAAAACAAACTTCATATGGAAATTTAATTCCTATGTCAACCAAACTACCCCATAATCAATTGCCTAATAAGACATTAAAATCAAATATGTTTTCAAGAACATTTGTTAAGTTTTATAAACATAATACCAGTATAATAGTTTACTTAAAAAAAAGTAAAAAAGAGTTCACCATATATTACGATATACTCCGTATTTCGTATTAGAAAATAAAATTTGGCCCCACATTTGTCATCAAAATAACCACGCCAAAACATCAAATAAAGTCCCAACTTTTAACTATTGACACACAAGGTTGTGTACAAAATAATCCTAAGAAGTAAGAAGTAAGAAGTAAGAAGTAAGAAGTAAGAAGTAAGAAGTAAGAAGTAAGAAGTAAGAAGTAAGAAGTAAGAAACAAATGGATTAACAAAAGATGAAATCTAGCTTCTCTTAACACAATCCGGAAAATAAGAAAAAGAAGTTCAACCGTAATTCCAGATAAGAAATGGATCCAATAAAGAAACCCGTATTAGACACGTGGACAAAACGTCAAACCGAAACCAGCCAAGCCGAGCCGAGCCAGGAAGCCAAACACTAAAGTAAAGAAAGTGAACGGGTAATAGCCGGTTAAAACCGGTTATAAAACCAAGTAAGCCGTACGATAATTACAGGGTCGTTCCCATGGCAGTTGGTAAGCATTTAGTGCGTGCTTCTTCTCTCTCCTCTCTCACTCACTTCTCACTCATTATTTCTATTTTCGTTTCTGGGTTTTCAATTTTGATTTAGTGAGAGAAAATTGCAGTAACTTCTCTCACTTTCTCTCTCTAAAAACTCCATTTTTTTAATAGATCCGTTTACATTACATTACCCTTCTTCCTCCTGCATTCTCTACCACTTGCCATTCCTACATTTCAAGGTATAATTTTGAGTTTTGAATTACTGGGTTTTGTGTAATACAAGCCTTTTGATTTCTGGGTTTCTAGTACGGAGTAGTTTATTTTATTTTAATTTTAAGGTGTCTTGAATTTCACACAAATGGGAGTTTATCAAAACCTTTCTTTTTGAAGTAATGTCATTTTTATCACTTTCGATTTATTGGAATTTGGGTTTGTGTAATTATCTTCTTGAATTATGTGATTTCTATTTCTGGGTATAATTTTGATCAATGTTAAACTTTAAGTTTCTTTGAATTTGTTCATTTGAATTGTTCTAGTGGCGGGCCATGATTAATTGCTTAATCACACTTTCCTTGGGTGCATGCAGTATTTGGAAGAAGAGTACGGGGTTCATAGTGGAAATTTAATGAAATGATTAGTTAACTTAAGCTTCAGTCATGTATGAATCCAGGTCAAGATCATAATCATGCTACTTCTGAATTTATATTCTTTCAATAATGTAGTTTATTTAATTGATGAAATTAATCTGATTTATTTGTTTCTACATTTCAGGGATTATAATTGAGCCTCAGAAATTCTCAGCATCAGGGTTTCAATACATGCTATTAGTGGTAATATTTGTACAGTTATTGGGTAAATAGTGGAAAGTTTGATCTGGCATCCCATTTGAAGCTGTGAAGGTTAGAAGACTATGGATTGTGATTAGATTCTGTATTGGAAGTTAATTTGATTGAATTTCGACCATTTCGACGAAAATTAGGGTCTAATTGTGTATTGGGATTGTATGATCAATTGGTAAATACTTTAATTAGGGCTAATAGTAGAAATAGGGGGTACTTGAGTTGGATTCTTGGTGATTTAGGGTTTGATTAA

mRNA sequence

ATGAAAGAAGTAGAACTTCCTAGGAACTTGGAGTTCCCATGGGACATGGAAAATGGCTTACCTACCCTCCCTTGATCCGTTTACATTACATTACCCTTCTTCCTCCTGCATTCTCTACCACTTGCCATTCCTACATTTCAAGTATTTGGAAGAAGAGTACGGGGGATTATAATTGAGCCTCAGAAATTCTCAGCATCAGGGTTTCAATACATGCTATTAGTGGTAATATTTGTACAGTTATTGGATTCTGTATTGGAAGTTAATTTGATTGAATTTCGACCATTTCGACGAAAATTAGGGTCTAATTGTGTATTGGGATTGTATGATCAATTGGTAAATACTTTAATTAGGGCTAATAGTAGAAATAGGGGGTACTTGAGTTGGATTCTTGGTGATTTAGGGTTTGATTAA

Coding sequence (CDS)

ATGCTATTAGTGGTAATATTTGTACAGTTATTGGATTCTGTATTGGAAGTTAATTTGATTGAATTTCGACCATTTCGACGAAAATTAGGGTCTAATTGTGTATTGGGATTGTATGATCAATTGGTAAATACTTTAATTAGGGCTAATAGTAGAAATAGGGGGTACTTGAGTTGGATTCTTGGTGATTTAGGGTTTGATTAA

Protein sequence

MLLVVIFVQLLDSVLEVNLIEFRPFRRKLGSNCVLGLYDQLVNTLIRANSRNRGYLSWILGDLGFD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo14712Spo14712gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo14712.1Spo14712.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14712.1.exon.1Spo14712.1.exon.1exon
Spo14712.1.exon.2Spo14712.1.exon.2exon
Spo14712.1.exon.3Spo14712.1.exon.3exon
Spo14712.1.exon.4Spo14712.1.exon.4exon
Spo14712.1.exon.5Spo14712.1.exon.5exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14712.1.utr5p.1Spo14712.1.utr5p.1five_prime_UTR
Spo14712.1.utr5p.2Spo14712.1.utr5p.2five_prime_UTR
Spo14712.1.utr5p.3Spo14712.1.utr5p.3five_prime_UTR
Spo14712.1.utr5p.4Spo14712.1.utr5p.4five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14712.1.CDS.1Spo14712.1.CDS.1CDS
Spo14712.1.CDS.2Spo14712.1.CDS.2CDS


Homology
The following BLAST results are available for this feature:
BLAST of Spo14712.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo14712.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo14712.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo14712.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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