Spo14080.1 (mRNA)

Overview
NameSpo14080.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionKinesin-like protein
Locationchr4 : 80960069 .. 80963347 (+)
Sequence length1574
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCACACCCGCCCCATCACCCATGGCGGGTACGATTTTTATACCCATCCCCGCCCCATCACCCGCCAAACCTACTCCCATCCTCGCCTACTTGGGGCAGATGCCGGGCGGGTCTCCCGCGAAACCCGCCCCATTGACATCCCTACTCCCTCTCCTTCCTTCTCTCTTTCTCCAGCCTTCATCCCCTTCCTCTCCTGTTTTTGCTTCCAATGAGCACCTACAGCTCTTTTCCGTCAGGAGCAGTCTCAAAATAATTGAGATATACTGATGGCAGTCTTCTTTCGTGGTTTTGTTGATAGATTGTCATTTCCTTTTTCAGAAGAATTCAATACACAGAAAATTCAAAAGGAAAACAACGGGGTCTAGAAATTGGAAAACCTAAGAAGTAATCTCCGACCCATTTTACAAATCTTACACCCACTCAAATTTTTTTGGGTTTTTCAGCAATTCCCCATCAGATTTTCAGTTTTTTTTTTTTTTTTAAAGGTGAGAGATTCGTAATTTCTTTGTTACGAATCAATGTTTGCACAATTGGTTGGTGGTTTTTTTTAATTAAATTTTTTAACTGTAATTGATTGAATTCATTTTGTTTTCTGGGTTTTGTTGGGGTTTGGTGTGTGATTTGGGGAATTCTGGTTAAAATTAGTTCGATCCGAGATGATGCAGATATACTGGTTTTAGTTTGATTTTATGGGAATATCGAAAGGGGGAATATTCATGGTTTAGGTTTTTGATAAAAAATTTGTCAGAGGTTTAGATAATTAGATCATCATTAATATTTCTTTCACTGCTGTCGGTTGATGTTTGATGAAAGAAATGATTTTTGGGTAAGATCGAACAGTTTGCCATATGATTCTTTTTAGAATAGTATTGTTCTTGTATCTTATCTTACTATCTTAAGGTTGTTGATGTAATTTAAGGTTTCTCTGGTCTGGATGATGTTTTACTTCCTACTTGGTCATGAAAATTGTGTGTTTTGGATTATTCTAATTTGATGATATCTATCATCAATCAATTAATTGGGTGGGCCCTATGGCAGAAGTTTGAATGTTCTTTCCTTTATAATTTGAGTGATCATTTTGTGATTATGCATCTATTGCTTGTAGTGATCGTTCTTGTGATGTGTTTGCTTTTATAGTCTCTTTTGTGCAACAAAATGAATAAGATTGGCCTTGGGTTTTGATAGATTTTGCAGGCGAAATGGTTGATGTTGATAGTAAACATTGAATAGAAGACTCTTTGTGGTATGTTCTCCTTGATATGTTGCATAAGAGGTTGTTAGATTATAGATTCAATGGAAATTAGGTGTATTTCATCCATAGAGCTGCTAGATCTACTAGGGTAATTACGTTTGAATGTGTTTCTAACTTACAAAAGGAACACCCTAAGGAAACAAAGCTATGTTTGTTCATAGTGTATAAATATTGCGAGACCGTTGTTTCGATCTCATTGATAATCTCAACTTACCTATCTGCAGTTATGAAACCTGATCGTGCAAAGCTTAAGATCAAAGTGTTATTGAATAAAAAATGGTGAGTCTAACTACTAATAATTTATCATTGGTGGTGACAGTGATTTCTATTTTTATGCTTAATGGGCTTACAAAATCTCATTTAATATTTCAGCTCTTGGAGCCTTGGAGGAGGAAGAATGATTTTTTTTTTGAAGAATGATTTCAAGGGTATTGTGGCTCCTAACACGTTCAAGGTTGGGCTCGAGGAAGATGGTTTGAGATTGCTGCTGGTTAAACGTAGGTTGTTGTGTTTTTTTAGTACTCGGACTGGTACTGGGAGGGATTTCCTAAGGTAATTGTTTATATTTTTACATTTGATTTTTTGGTAAATTGATTGAATTTTGCTGAGGTTTTGATTTGTTCATTGTATTCATTTATATAATTCTTGAAATTGTGGATGTTACCGGTAGTTGGAAATTAACTTAATTGAAAGTGAGCTCCTGGTGATTTGGTTGACTGGTAGAAAATTGGTGTTCGTGGTTGAGCTGATTTGTCGAGATTTTGTTTCTTGAATGAATTTTGTGTATTTGAAAAGCCGGGTTGTGTAGTAGATACATGCTTGATTAGTTGAAACCTTTGCTGCAGTTTGACGTACTAATTGTCACATAATTCAGCCTGATGTATATTGATCGTCACATAAACCTTTGCCATAGGGCCCACCCAATACATCGCAGATGAGGGCATTAAGGAATCACACGCTCATCCGACTATTACTATTTGAAGACTTCCTCTAAAAAGTGTTAGATCATATTCAGTTTGTAGTATACTGGCATTACCTGGTTATGGGAATTCCCTGGATACGATTCTATCCCCCCCCTTTTAAGTGTATCGGGGAGCTTGCTATGAGCTGAAAATATCAAAACATAGTCTCTGCTTGACAGAATGGCAGTACACAGACCCCCCACAGTAGAGGCATATCAAGGTTGAACGTTTTAGCTCATGTAGGTACAAAATTGCATTGTCGATTCATGTTTTGTGCATAATTCTGTTAAAGTCTCCAGATTATGTTGGTAGGTGCATGTTGTCTTCCTGCTTATGTAAGATGTTAAGTTAGAGGTAGTCCTTACTCTTGTTATATCTGCAAGAGATTGCTTTTTGCTGGAAATTATGCAAGATGACTAGATGAGCTATATGTTTCTCCACTGCCCTATTTACTTTTTCGTAGCAAAATCAAGGAAAAATACTGATGTTTTTCTTATTTCCTGAAAATTTGTCTTTAATTGGAAAATCTGCTATTTGTCATAGTCTGTTGAAGAGTTATAACGTAGGATGTTTAGAAGCCTTCCCACTGAGCCAGTAGTGCATTCTCGACATTCTCGATTGAAGTGTTATCCTAATTAGCAATCGTATTTTGCGATTTAGCCCTTGTGTCATTGCTTTTACACATTTTGATCGTGTTTTTGATAGTTTCAGTTTACTTTCTAAATTTAATCTGACTTAAATTCTTTAGTTTCAACTTTGGCGGCTTGAGTGGTTTTGTGACCCTGCAAAGCATGCTTTGATGTGCACATTACCAGTGTGTCGAACTAAGAATACAAAGTTATGGCTAATTCAATTACAATTCATGTGTTGTATTATAATTGTCAGTTTATTCAATTTCTTCTTCAAGTTGTCAAACCAACATGACTTTATTGATGTTCTGCGACAATTTTTTATTGATCTGGCTGGAAGTGAGGGTGCATCTCAGGCAATGTCAGCTGGGACACAACTAAAGGAAGGTTGCCACATAAACTGGAGTTTGCTGACACTAGGGAATGCTATCAGCTAA

mRNA sequence

CCACACCCGCCCCATCACCCATGGCGGGTACGATTTTTATACCCATCCCCGCCCCATCACCCGCCAAACCTACTCCCATCCTCGCCTACTTGGGGCAGATGCCGGGCGGGTCTCCCGCGAAACCCGCCCCATTGACATCCCTACTCCCTCTCCTTCCTTCTCTCTTTCTCCAGCCTTCATCCCCTTCCTCTCCTGTTTTTGCTTCCAATGAGCACCTACAGCTCTTTTCCGTCAGGAGCAGTCTCAAAATAATTGAGATATACTGATGGCAGTCTTCTTTCGTGGTTTTGTTGATAGATTGTCATTTCCTTTTTCAGAAGAATTCAATACACAGAAAATTCAAAAGGAAAACAACGGGGTCTAGAAATTGGAAAACCTAAGAAGTAATCTCCGACCCATTTTACAAATCTTACACCCACTCAAATTTTTTTGGGTTTTTCAGCAATTCCCCATCAGATTTTCAGTTTTTTTTTTTTTTTTAAAGGTGAGAGATTCGTAATTTCTTTGTTACGAATCAATGTTTGCACAATTGGTTGGTGGTTTTTTTTAATTAAATTTTTTAACTGTAATTGATTGAATTCATTTTGTTTTCTGGGTTTTGTTGGGGTTTGGTGTGTGATTTGGGGAATTCTGGTTAAAATTAGTTCGATCCGAGATGATGCAGATATACTGGTTTTAGTTTGATTTTATGGGAATATCGAAAGGGGGAATATTCATGGTTTAGGTTTTTGATAAAAAATTTGTCAGAGGTTTAGATAATTAGATCATCATTAATATTTCTTTCACTGCTGTCGGTTGATGTTTGATGAAAGAAATGATTTTTGGGTAAGATCGAACAGTTTGCCATATGATTCTTTTTAGAATAGTATTGTTCTTGTATCTTATCTTACTATCTTAAGGTTGTTGATGTAATTTAAGGTTTCTCTGGTCTGGATGATGTTTTACTTCCTACTTGGTCATGAAAATTGTGTGTTTTGGATTATTCTAATTTGATGATATCTATCATCAATCAATTAATTGGGTGGGCCCTATGGCAGAAGTTTGAATGTTCTTTCCTTTATAATTTGAGTGATCATTTTGTGATTATGCATCTATTGCTTGTAGTGATCGTTCTTGTGATGTGTTTGCTTTTATAGTCTCTTTTGTGCAACAAAATGAATAAGATTGGCCTTGGGTTTTGATAGATTTTGCAGGCGAAATGGTTGATGTTGATAGTAAACATTGAATAGAAGACTCTTTGTGTTATGAAACCTGATCGTGCAAAGCTTAAGATCAAAGTGTTATTGAATAAAAAATGCTCTTGGAGCCTTGGAGGAGGAAGAATGATTTTTTTTTTGAAGAATGATTTCAAGGGTATTGTGGCTCCTAACACGTTCAAGGTTGGGCTCGAGGAAGATGGTTTGAGATTGCTGCTGGTTAAACGTAGGTTGTTGTGTTTTTTTAGTACTCGGACTGGTACTGGGAGGGATTTCCTAAGTGAGGGTGCATCTCAGGCAATGTCAGCTGGGACACAACTAAAGGAAGGTTGCCACATAAACTGGAGTTTGCTGACACTAGGGAATGCTATCAGCTAA

Coding sequence (CDS)

ATGAAACCTGATCGTGCAAAGCTTAAGATCAAAGTGTTATTGAATAAAAAATGCTCTTGGAGCCTTGGAGGAGGAAGAATGATTTTTTTTTTGAAGAATGATTTCAAGGGTATTGTGGCTCCTAACACGTTCAAGGTTGGGCTCGAGGAAGATGGTTTGAGATTGCTGCTGGTTAAACGTAGGTTGTTGTGTTTTTTTAGTACTCGGACTGGTACTGGGAGGGATTTCCTAAGTGAGGGTGCATCTCAGGCAATGTCAGCTGGGACACAACTAAAGGAAGGTTGCCACATAAACTGGAGTTTGCTGACACTAGGGAATGCTATCAGCTAA

Protein sequence

MKPDRAKLKIKVLLNKKCSWSLGGGRMIFFLKNDFKGIVAPNTFKVGLEEDGLRLLLVKRRLLCFFSTRTGTGRDFLSEGASQAMSAGTQLKEGCHINWSLLTLGNAIS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo14080Spo14080gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo14080.1Spo14080.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14080.1.exon.1Spo14080.1.exon.1exon
Spo14080.1.exon.2Spo14080.1.exon.2exon
Spo14080.1.exon.3Spo14080.1.exon.3exon
Spo14080.1.exon.4Spo14080.1.exon.4exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14080.1.utr5p.1Spo14080.1.utr5p.1five_prime_UTR
Spo14080.1.utr5p.2Spo14080.1.utr5p.2five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo14080.1.CDS.1Spo14080.1.CDS.1CDS
Spo14080.1.CDS.2Spo14080.1.CDS.2CDS
Spo14080.1.CDS.3Spo14080.1.CDS.3CDS


Homology
[Close]
BLAST of Spo14080.1 vs. NCBI nr
Match: gi|902157691|gb|KNA06154.1| (hypothetical protein SOVF_183740 [Spinacia oleracea])

HSP 1 Score: 223.0 bits (567), Expect = 2.500e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

		  

Query: 1   MKPDRAKLKIKVLLNKKCSWSLGGGRMIFFLKNDFKGIVAPNTFKVGLEEDGLRLLLVKR 60
           MKPDRAKLKIKVLLNKKCSWSLGGGRMIFFLKNDFKGIVAPNTFKVGLEEDGLRLLLVKR
Sbjct: 1   MKPDRAKLKIKVLLNKKCSWSLGGGRMIFFLKNDFKGIVAPNTFKVGLEEDGLRLLLVKR 60

Query: 61  RLLCFFSTRTGTGRDFLSEGASQAMSAGTQLKEGCHINWSLLTLGNAIS 110
           RLLCFFSTRTGTGRDFLSEGASQAMSAGTQLKEGCHINWSLLTLGNAIS
Sbjct: 61  RLLCFFSTRTGTGRDFLSEGASQAMSAGTQLKEGCHINWSLLTLGNAIS 109
[Close]
BLAST of Spo14080.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QFW6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_183740 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.800e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

		  

Query: 1   MKPDRAKLKIKVLLNKKCSWSLGGGRMIFFLKNDFKGIVAPNTFKVGLEEDGLRLLLVKR 60
           MKPDRAKLKIKVLLNKKCSWSLGGGRMIFFLKNDFKGIVAPNTFKVGLEEDGLRLLLVKR
Sbjct: 1   MKPDRAKLKIKVLLNKKCSWSLGGGRMIFFLKNDFKGIVAPNTFKVGLEEDGLRLLLVKR 60

Query: 61  RLLCFFSTRTGTGRDFLSEGASQAMSAGTQLKEGCHINWSLLTLGNAIS 110
           RLLCFFSTRTGTGRDFLSEGASQAMSAGTQLKEGCHINWSLLTLGNAIS
Sbjct: 61  RLLCFFSTRTGTGRDFLSEGASQAMSAGTQLKEGCHINWSLLTLGNAIS 109
[Close]
BLAST of Spo14080.1 vs. ExPASy Swiss-Prot
Match: KN7F_ARATH (Kinesin-like protein KIN-7F OS=Arabidopsis thaliana GN=KIN7F PE=2 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.700e-6
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 1 

		  

Query: 78  SEGASQAMSAGTQLKEGCHINWSLLTLGNAI 109
           SE ASQAMSAGT+LKEGCHIN SLLTLG  I
Sbjct: 244 SERASQAMSAGTRLKEGCHINRSLLTLGTVI 274
[Close]
BLAST of Spo14080.1 vs. TAIR (Arabidopsis)
Match: AT4G38950.1 (ATP binding microtubule motor family protein)

HSP 1 Score: 52.4 bits (124), Expect = 2.100e-7
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 1 

		  

Query: 78  SEGASQAMSAGTQLKEGCHINWSLLTLGNAI 109
           SE ASQAMSAGT+LKEGCHIN SLLTLG  I
Sbjct: 244 SERASQAMSAGTRLKEGCHINRSLLTLGTVI 274
[Close]
BLAST of Spo14080.1 vs. TAIR (Arabidopsis)
Match: AT5G66310.1 (ATP binding microtubule motor family protein)

HSP 1 Score: 50.8 bits (120), Expect = 6.000e-7
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 1 

		  

Query: 66  FSTRTGTGRDFL----SEGASQAMSAGTQLKEGCHINWSLLTLGNAI 109
           FST T T  +F+    SE ASQ++SAGT+LKEGCHIN SLLTLG  I
Sbjct: 236 FSTLTATV-NFIDLAGSERASQSLSAGTRLKEGCHINRSLLTLGTVI 281
[Close]
BLAST of Spo14080.1 vs. TAIR (Arabidopsis)
Match: AT5G42490.1 (ATP binding microtubule motor family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.300e-6
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 1 

		  

Query: 78  SEGASQAMSAGTQLKEGCHINWSLLTLGNAI 109
           SE ASQ +SAGT+LKEGCHIN SLLTLG  I
Sbjct: 239 SERASQTLSAGTRLKEGCHINRSLLTLGTVI 269
[Close]
BLAST of Spo14080.1 vs. TAIR (Arabidopsis)
Match: AT2G21300.1 (ATP binding microtubule motor family protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.800e-6
Identity = 24/31 (77.42%), Postives = 26/31 (83.87%), Query Frame = 1 

		  

Query: 78  SEGASQAMSAGTQLKEGCHINWSLLTLGNAI 109
           SE ASQA+SAG +LKEGCHIN SLLTLG  I
Sbjct: 255 SERASQALSAGARLKEGCHINRSLLTLGTVI 285
[Close]
BLAST of Spo14080.1 vs. TAIR (Arabidopsis)
Match: AT4G24170.1 (ATP binding microtubule motor family protein)

HSP 1 Score: 48.1 bits (113), Expect = 3.900e-6
Identity = 23/31 (74.19%), Postives = 26/31 (83.87%), Query Frame = 1 

		  

Query: 78  SEGASQAMSAGTQLKEGCHINWSLLTLGNAI 109
           SE ASQ +SAG++LKEGCHIN SLLTLG  I
Sbjct: 235 SERASQTLSAGSRLKEGCHINRSLLTLGTVI 265
The following BLAST results are available for this feature:
BLAST of Spo14080.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902157691|gb|KNA06154.1|2.5e-55100.hypothetical protein SOVF_1837... [more]
back to top
BLAST of Spo14080.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QFW6_SPIOL1.8e-55100.Uncharacterized protein OS=Spi... [more]
back to top
BLAST of Spo14080.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KN7F_ARATH3.7e-683.8Kinesin-like protein KIN-7F OS... [more]
back to top
BLAST of Spo14080.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT4G38950.12.1e-783.8ATP binding microtubule motor ... [more]
AT5G66310.16.0e-763.8ATP binding microtubule motor ... [more]
AT5G42490.11.3e-677.4ATP binding microtubule motor ... [more]
AT2G21300.11.8e-677.4ATP binding microtubule motor ... [more]
AT4G24170.13.9e-674.1ATP binding microtubule motor ... [more]
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001752Kinesin motor domainGENE3D3.40.850.10coord: 78..109
score: 2.

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007018 microtubule-based movement
cellular_component GO:0005874 microtubule
cellular_component GO:0045298 tubulin complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0008017 microtubule binding
molecular_function GO:0003777 microtubule motor activity