Spo13407.1 (mRNA) | SpinachBase

Overview


Name	Spo13407.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	BnaA03g37860D protein
Location	chr2 : 41534896 .. 41535243 (+)
Sequence length	348

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCGTACATTGTCAGCTCTAAGGCAACACATTATAACAAAAAGGAAGAGCCCTAAGGTTGCAGATGAGACCATGTTTAGCAACATGAATGCTGATGGTGCCGGCATGCCATTGCCTGTATACGCTAATGACATGAACCGAACCGCTCGGTCACACCACACTCGAAACGGGCTGGCTGTGATTTCGACTATTGTTCGTATACCGTTTTCCATCCTTTCTTGCTTCTCCCAACACCATGGCAACGCCGCTGATGCCATGTGGGTCACCGGAGAAACCTTTCGGACTTCTTCGGAGATTGATCATCTTATGATCAGTGACAGTATGCGTTATGCAATTTTGATGTAG

mRNA sequence

ATGTTGCGTACATTGTCAGCTCTAAGGCAACACATTATAACAAAAAGGAAGAGCCCTAAGGTTGCAGATGAGACCATGTTTAGCAACATGAATGCTGATGGTGCCGGCATGCCATTGCCTGTATACGCTAATGACATGAACCGAACCGCTCGGTCACACCACACTCGAAACGGGCTGGCTGTGATTTCGACTATTGTTCGTATACCGTTTTCCATCCTTTCTTGCTTCTCCCAACACCATGGCAACGCCGCTGATGCCATGTGGGTCACCGGAGAAACCTTTCGGACTTCTTCGGAGATTGATCATCTTATGATCAGTGACAGTATGCGTTATGCAATTTTGATGTAG

Coding sequence (CDS)

ATGTTGCGTACATTGTCAGCTCTAAGGCAACACATTATAACAAAAAGGAAGAGCCCTAAGGTTGCAGATGAGACCATGTTTAGCAACATGAATGCTGATGGTGCCGGCATGCCATTGCCTGTATACGCTAATGACATGAACCGAACCGCTCGGTCACACCACACTCGAAACGGGCTGGCTGTGATTTCGACTATTGTTCGTATACCGTTTTCCATCCTTTCTTGCTTCTCCCAACACCATGGCAACGCCGCTGATGCCATGTGGGTCACCGGAGAAACCTTTCGGACTTCTTCGGAGATTGATCATCTTATGATCAGTGACAGTATGCGTTATGCAATTTTGATGTAG

Protein sequence

MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARSHHTRNGLAVISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo13407	Spo13407	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo13407.1	Spo13407.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13407.1.exon.1	Spo13407.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13407.1.CDS.1	Spo13407.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo13407.1 vs. NCBI nr
Match: gi|902194699|gb|KNA12629.1| (hypothetical protein SOVF_124300 [Spinacia oleracea])

HSP 1 Score: 230.3 bits (586), Expect = 1.700e-57
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 1


		  
Query: 1   MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARSHHTRNGLA 60
           MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTAR HHTRNGLA
Sbjct: 1   MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARPHHTRNGLA 60

Query: 61  VISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM 116
           VISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM
Sbjct: 61  VISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM 115

[Close]

BLAST of Spo13407.1 vs. NCBI nr
Match: gi|731371509|ref|XP_010666063.1| (PREDICTED: uncharacterized protein LOC104883274 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 173.3 bits (438), Expect = 2.400e-40
Identity = 84/115 (73.04%), Postives = 98/115 (85.22%), Query Frame = 1


		  
Query: 1   MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARSHHTRNGLA 60
           MLRTL+ LRQH+ITKRKSPKVADETMFSN++ D +GMP+    +D+NR+  S H  NGL+
Sbjct: 1   MLRTLATLRQHMITKRKSPKVADETMFSNISMDASGMPIYGAPHDINRSTSSRHASNGLS 60

Query: 61  VISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM 116
           VISTI RIPFSILSCFSQHHGNA+DA+WVTG+  R+ SEIDHLMI DSMRYAILM
Sbjct: 61  VISTIFRIPFSILSCFSQHHGNASDAIWVTGDMVRSPSEIDHLMICDSMRYAILM 115

[Close]

BLAST of Spo13407.1 vs. NCBI nr
Match: gi|731327824|ref|XP_010674723.1| (PREDICTED: uncharacterized protein LOC104890820 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 132.1 bits (331), Expect = 6.200e-28
Identity = 71/115 (61.74%), Postives = 81/115 (70.43%), Query Frame = 1


		  
Query: 1   MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARSHHTRNGLA 60
           M RT +A R+HI+TKRKSPKVADETMF N    G G  +P Y  +++    S    NG  
Sbjct: 1   MSRTFTAFREHILTKRKSPKVADETMFVN----GIGARIPTYGEEVDH---SRQPWNGFL 60

Query: 61  VISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM 116
           +I TIVRIPFSILSCFS   GN AD  WVTG+  RT SEIDHLM+SDSMRYAILM
Sbjct: 61  IIYTIVRIPFSILSCFSNRRGNTADRTWVTGDPMRT-SEIDHLMVSDSMRYAILM 107

[Close]

BLAST of Spo13407.1 vs. NCBI nr
Match: gi|902220943|gb|KNA18737.1| (hypothetical protein SOVF_068060 [Spinacia oleracea])

HSP 1 Score: 122.1 bits (305), Expect = 6.400e-25
Identity = 71/115 (61.74%), Postives = 79/115 (68.70%), Query Frame = 1


		  
Query: 1   MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARSHHTRNGLA 60
           M RT +ALR+HI+TKRKS KVADETMF N      G+   +YA D     +     NGL 
Sbjct: 1   MSRTFTALREHILTKRKSRKVADETMFGN------GIGAIIYA-DHEVEQQRRQPWNGLL 60

Query: 61  VISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM 116
           VI TIVRIPFSILS FS+  GN AD  WVTG T RT SEIDHLM+SDSMRYAI M
Sbjct: 61  VIYTIVRIPFSILSSFSKRQGNIADRTWVTGHTMRT-SEIDHLMVSDSMRYAICM 107

[Close]

BLAST of Spo13407.1 vs. NCBI nr
Match: gi|952025440|gb|ALN97013.1| (hypothetical protein [Populus tomentosa])

HSP 1 Score: 107.1 bits (266), Expect = 2.100e-20
Identity = 62/116 (53.45%), Postives = 76/116 (65.52%), Query Frame = 1


		  
Query: 1   MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARSHHTRNGLA 60
           M R L+ LR ++   RKSP+VADE+MF  MN    G   P+   DMNRT    H  N L+
Sbjct: 1   MWRKLARLRSNVQNIRKSPRVADESMFGGMN----GAEFPILVRDMNRT----HRWNALS 60

Query: 61  VISTIVRIPFSILSCF-SQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM 116
            +  IV +PFSI SCF SQ H N AD +WVTGE F   SE++HLM++DSMRYAILM
Sbjct: 61  SLLRIVLVPFSIPSCFSSQPHVNGADGLWVTGE-FAQLSEMNHLMVNDSMRYAILM 107

[Close]

BLAST of Spo13407.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZF0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_124300 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.200e-57
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 1


		  
Query: 1   MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARSHHTRNGLA 60
           MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTAR HHTRNGLA
Sbjct: 1   MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARPHHTRNGLA 60

Query: 61  VISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM 116
           VISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM
Sbjct: 61  VISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM 115

[Close]

BLAST of Spo13407.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B5V9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g225670 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.700e-40
Identity = 84/115 (73.04%), Postives = 98/115 (85.22%), Query Frame = 1


		  
Query: 1   MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARSHHTRNGLA 60
           MLRTL+ LRQH+ITKRKSPKVADETMFSN++ D +GMP+    +D+NR+  S H  NGL+
Sbjct: 1   MLRTLATLRQHMITKRKSPKVADETMFSNISMDASGMPIYGAPHDINRSTSSRHASNGLS 60

Query: 61  VISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM 116
           VISTI RIPFSILSCFSQHHGNA+DA+WVTG+  R+ SEIDHLMI DSMRYAILM
Sbjct: 61  VISTIFRIPFSILSCFSQHHGNASDAIWVTGDMVRSPSEIDHLMICDSMRYAILM 115

[Close]

BLAST of Spo13407.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CJL5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g081210 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 4.300e-28
Identity = 71/115 (61.74%), Postives = 81/115 (70.43%), Query Frame = 1


		  
Query: 1   MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARSHHTRNGLA 60
           M RT +A R+HI+TKRKSPKVADETMF N    G G  +P Y  +++    S    NG  
Sbjct: 1   MSRTFTAFREHILTKRKSPKVADETMFVN----GIGARIPTYGEEVDH---SRQPWNGFL 60

Query: 61  VISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM 116
           +I TIVRIPFSILSCFS   GN AD  WVTG+  RT SEIDHLM+SDSMRYAILM
Sbjct: 61  IIYTIVRIPFSILSCFSNRRGNTADRTWVTGDPMRT-SEIDHLMVSDSMRYAILM 107

[Close]

BLAST of Spo13407.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RIQ8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_068060 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.400e-25
Identity = 71/115 (61.74%), Postives = 79/115 (68.70%), Query Frame = 1


		  
Query: 1   MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARSHHTRNGLA 60
           M RT +ALR+HI+TKRKS KVADETMF N      G+   +YA D     +     NGL 
Sbjct: 1   MSRTFTALREHILTKRKSRKVADETMFGN------GIGAIIYA-DHEVEQQRRQPWNGLL 60

Query: 61  VISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM 116
           VI TIVRIPFSILS FS+  GN AD  WVTG T RT SEIDHLM+SDSMRYAI M
Sbjct: 61  VIYTIVRIPFSILSSFSKRQGNIADRTWVTGHTMRT-SEIDHLMVSDSMRYAICM 107

[Close]

BLAST of Spo13407.1 vs. UniProtKB/TrEMBL
Match: A0A0S2GL29_POPTO (Uncharacterized protein OS=Populus tomentosa PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.500e-20
Identity = 62/116 (53.45%), Postives = 76/116 (65.52%), Query Frame = 1


		  
Query: 1   MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARSHHTRNGLA 60
           M R L+ LR ++   RKSP+VADE+MF  MN    G   P+   DMNRT    H  N L+
Sbjct: 1   MWRKLARLRSNVQNIRKSPRVADESMFGGMN----GAEFPILVRDMNRT----HRWNALS 60

Query: 61  VISTIVRIPFSILSCF-SQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM 116
            +  IV +PFSI SCF SQ H N AD +WVTGE F   SE++HLM++DSMRYAILM
Sbjct: 61  SLLRIVLVPFSIPSCFSSQPHVNGADGLWVTGE-FAQLSEMNHLMVNDSMRYAILM 107

[Close]

BLAST of Spo13407.1 vs. TAIR (Arabidopsis)
Match: AT5G35732.1 (unknown protein)

HSP 1 Score: 77.8 bits (190), Expect = 4.900e-15
Identity = 50/115 (43.48%), Postives = 71/115 (61.74%), Query Frame = 1


		  
Query: 1   MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARSHHTRNGLA 60
           M + LS LR+++   RKSP+VAD+T   + +  GAG    V AN           R+G  
Sbjct: 1   MTQMLSVLRRNLQNLRKSPRVADDTELPS-STSGAGPG--VVANGR---------RDGFN 60

Query: 61  VISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM 116
             S I+R PFSI+SCF+    +  D +WV+G+ + + SE++HLM+SDSMRYAILM
Sbjct: 61  --SVIMRFPFSIISCFAVPRVSGTDGLWVSGD-YGSISEVNHLMVSDSMRYAILM 100

[Close]

BLAST of Spo13407.1 vs. TAIR (Arabidopsis)
Match: AT2G04795.1 (unknown protein)

HSP 1 Score: 71.2 bits (173), Expect = 4.600e-13
Identity = 44/115 (38.26%), Postives = 63/115 (54.78%), Query Frame = 1


		  
Query: 1   MLRTLSALRQHIITKRKSPKVADETMFSNMNADGAGMPLPVYANDMNRTARSHHTRNGLA 60
           ML+ LS LR+++   RKSP+VADE+   +   +G                  H   NG  
Sbjct: 1   MLKMLSILRRNLQNLRKSPRVADESALPSTTVNG-----------------DHGGGNGSN 60

Query: 61  VISTIVRIPFSILSCFSQHHGNAADAMWVTGETFRTSSEIDHLMISDSMRYAILM 116
               I++ P SI+SCFS    + AD +WV+G+  R  SE++HLM+ D MRYA+LM
Sbjct: 61  --GGIMKFPLSIMSCFSVPRVSRADGVWVSGDYGRV-SEVNHLMVCDGMRYALLM 95

The following BLAST results are available for this feature:

BLAST of Spo13407.1 vs. NCBI nr
BLAST of Spo13407.1 vs. UniProtKB/TrEMBL
BLAST of Spo13407.1 vs. ExPASy Swiss-Prot
BLAST of Spo13407.1 vs. TAIR (Arabidopsis)

BLAST of Spo13407.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902194699\|gb\|KNA12629.1\|	1.7e-57	99.1	hypothetical protein SOVF_1243...	[more]
gi\|731371509\|ref\|XP_010666063.1\|	2.4e-40	73.0	PREDICTED: uncharacterized pro...	[more]
gi\|731327824\|ref\|XP_010674723.1\|	6.2e-28	61.7	PREDICTED: uncharacterized pro...	[more]
gi\|902220943\|gb\|KNA18737.1\|	6.4e-25	61.7	hypothetical protein SOVF_0680...	[more]
gi\|952025440\|gb\|ALN97013.1\|	2.1e-20	53.4	hypothetical protein [Populus ...	[more]

BLAST of Spo13407.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QZF0_SPIOL	1.2e-57	99.1	Uncharacterized protein OS=Spi...	[more]
A0A0J8B5V9_BETVU	1.7e-40	73.0	Uncharacterized protein OS=Bet...	[more]
A0A0J8CJL5_BETVU	4.3e-28	61.7	Uncharacterized protein OS=Bet...	[more]
A0A0K9RIQ8_SPIOL	4.4e-25	61.7	Uncharacterized protein OS=Spi...	[more]
A0A0S2GL29_POPTO	1.5e-20	53.4	Uncharacterized protein OS=Pop...	[more]

BLAST of Spo13407.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo13407.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G35732.1	4.9e-15	43.4	unknown protein	[more]
AT2G04795.1	4.6e-13	38.2	unknown protein	[more]