Spo13209.1 (mRNA)

Overview
NameSpo13209.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
Description(Cytochrome c oxidase subunit 6b) (Cytochrome c oxidase subunit 6b-1) (Cytochrome c oxidase subunit, putative, expressed)
LocationSpoScf_01380 : 145732 .. 155277 (+)
Sequence length1178
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCGGAATCAACCTAATTAACCCGTTTGTCTACCAGAAATCCGGTGGTTAAAAACCCTATGCAGTGGCCAAGCCCGTTTGAGATTATTGTTACCAGATTATGGCCCACCCAAGCCAACAAATGGTTTCTTACGTTTACTAAAAGGAGCAATATAAAAATGGTTCAAATACGTTTTCCTGCAATTAAGAACAACAATAATCACCAAAATTTTCTCTTTCCTCATTTCGTCGTATCGGTTCTCACTCCGTTTGATCTGATCGAAAAATGGACGAGGTATTTATCCCTTTTCTTCCCCCACTATCGATTTCCTGTTTCTACTCTTCTGAATCTCATGCATTTTTTCTATAAACGCAATTTAATTTGTTTATGAAATTATTTTTACTATTTTGAATTCTGTTTTAATTAGGGTGAATGAATTATTTGATTTTGTTTGAAATTATCGAATATTAGCGTAGTTAAATCGTTAATGTTAACGCGACGATTTTATGATTCAGTTGGTATGAATTTGGTTAGGTCGCATACTTTTTTTTGCCTTTTCGTAGTTTTTGGATTGAATTATGAGTGGAATATCAATTTTGTGACGTTTGAGAATCGGGGAAATTGAAGATTCTTTTGGGTATTTATATGACAAAAACAATATTAGAACTTTAATTGATGTAGCATTTTAGTATCTTGAATATATTTCTTTGATTGATATAAATTTGATTCATTTGAGACAAATGATGGTGATGTTATGCCTTGCAAAGATATGGAGGGTGTTATCCATTGATTTCGAGGGTTTTTAGGGAGAGACATGATGAAAGGTGTTTAAAGATACTCCTACAATAATAGTGTAGTGTGTAGTGAATAAGTTACATGCTTACATGCCATCCTGTTATCTTCGATAGGCACCCTTAACATCAAAATATCTACTAGAAGCTGTGTTGAGCAGGTTTCCTTGCAATGCCGTCCTTCTAGGACTTTTACACGCTTTATCAATTAACTAGTCTAATAAGTAGGCGGTGCCTATGAGGATTTTCTGGAATCTGGATTTGTATTTGTTAATTTCACTTGAGGATAAAGGTTGGCTACTATTTTGATGATTTCCAAGTTTTTTGGTCTAATTGAAGTGCCCTATAAGGATAGAAGCATGGTCCGTACATTAAATGTTGGTGTTCAAGGATTTATCATAGCCTCATTGGTATTCTGGTTGAGTGGTTGAAATGAAAAATCTGAGTAACTTGTTTGTAATAACGATATAACTTCTGTCAACGCCATGTTCCTTGGGTTTATTTAGGACACTTGATAAGGAAATTAATGTTGAGGTGCTGACCGTACTGGAGTCTCTTCATAATGTTCTCCAATAGGTCATACCTTAGTTGCTTGCATTTGTCTTGGTGACACTAGAAGATAATGTGAAATTCTGAATTTAAATAAATGGGGAATATTGTCTTGATGTAAGTTTTGGGGTATTGGTTGCAAAAACTTATTAAATGTGCTATCAACTCTGCATTGGAAAGGACATAAAAGGAAGGACAGAATTAGGAAATCAGGAGTAAAATTTTCTGGGTGGCAATCTTGTAAAGACAGGAACTTGGATTTGGCTGTTGATTTCGACAGAAGGTCTCGTAAGGCAATCCCAGGATGAAAGAACATCCTGGGCACACTCAAAGAGAATCGTGGTTGCTTCCACCTCTTTATAATCGTTCTGACATCTTTTTCATCCCATTTTTTCCCCTTAAATCTATTCAACTCCAAGTCCCCATCCTTCCATCCTTTTTTCCCTTGTGGCGGGGAATTTAAGCTAGTTTATCATAAATCAAAGCCTACACACTCAAAAAAAAAAAAAAGGAAAGAGAACTAAATGCATACCAAACCAAATGAAAAGAAAATTTCATAAAAAATGAGATAAGGGTAGAAACAATACCCTTACTCATTTTTGATGAAATTTTCTTTTCATTTGGTTTGGTATGCATTCAGATTTCTTTCCTTTTTTTTGAGTGTGTGACTTGGAGTTGAATAGATTTAAGGGGAAAAATGGGATGACAAAGATGTCAGAACGATGTATGGTCAGGACGATGATAAAGAGGTGGAAGCAACCACGATCCTCTTTGAGTGCGCTCAGGATGTATTGTAAGAACATCTTGGGATTGCCTTACCTGACCTTCTTGTTCGAAATTTGAGGTTGTATTCCATTTCCCATTTGTTACAACTTGGTTTGGATATATATTTTGAAAAAGCCCTACTCCATCCGCTCCAAAAAGAATATCATATCTAGCTATCATTATATTGGAGTTATTTGAAGGGTGCCCTCTTTTTTGTTTTTGAGGTAAATAAAGGTTAGTGGAATAAATTTTATGTAGTACTCCGGACTTTAGTAGTACAATGCTACAACCTTTTACTTTTTAGAGTTTTAAGAAAATGGAACTCCATGCCAAAGTCTAAATAGTATAAACCACTACTTCTATATGTAGAATAGTGTCTGTTATAAGTTTTTGTTAGCATCCCTAGAACTTCTATTGCTAACTTCTTTCACAAACCTTACGAAGTTACAAGGGTGCAATATAGCTACATTGCAATTCGGAATGCCTTAAGTGTTTGTTAACATCGTCTTGCTTTTGAGGCCAAGGATTATTATTTTGTTTTAAGCCATATGTTTGAGACCGTATTTTATTAAGCAAATTAATTTACAATTATTTTTTCACACACACTGCACATGTCATTGATGATACGGACATATATGTATAGACTTGCATAAGTATGTAAATACTTGCTTAGCTACTTTATGGGTTAGGTCAGGGAGGATTTATAGCATAAGAAGGATGGACATGAGGGTTACGTGGTTATTAATATTTCTTGCTTCCCTTGGTGGATATTCCTAGGGTTATTTTTTTAATGATATAAAGTATAAACCTCCATTGGCACACTAGTTACAAACAAAATAATTTTGATTTTAATTGTCTATAATTTCACACTTTCCGCCACCTTTTCCAAAATGCTGAACAATGACCCTGATCCTGTTTCCGATTTGTTTGTGTTGCAAACTTGCAATCAACTTTTATTTGATCCCAGCAAATCATCAAAATTTTCTTTCCTTGTAGAGAAAGCAGAAGCACTGCATAGCTTTCGCCAGTACTGCATCATTCAGTTAAACTTCTGTTTGAAACTCTCTTATTTCTTATTAGTGAGATGTGAAATTTTACTCCGACATTCTCCAGTTGCTCACTAACATTCATTTTTGTTGGGAATCGTTCTTTCCCCCTTGACTAGTTGCTCTTTACAAGACTATGTTGGTTTGCGTGTTTGGTTCCTCGGAGAGATTGTCTCTGTTTTTATAGAATAGTCCCATAATTTTTTAGTGATCCTAATGGTCTGTTTGTAGTAGCCAAAGATATTGAATGATGGAGTTGATGGGTTGCTACCAATTCTAAATGCAATCACGATTCATGAGTTGACATCAATTAGGTGCTTTGCAGATAATTGCTGGCTTGTCATTTGTTTTTTGAAGGGCTTTGGATAGAGTAATTTCCTCATGAATTTTTAAGTTCTCCAGGATTTTGAAAAAACTCTCTACTAGTATAAAATTATCTAACCAGTGGAATAATAGTTTTCGAAGACCTGAATCTTAGTTATACCTCTCTTAAAAATCCCCTTTTTGGTGGCTTTAGTGATCTTGAGGATGGCGCTTAGTTTTAAAAGGCACAAGGTACGCCAAGGCGCAAAAGTCCTCAGACCTTGCAGGCGCACGCCTTTTGTAGGTGAGCCACACTAAAAGTGCAAAAACCTTAGATATCATTTCCAGAACATATTATGTACTCAAAACAACACAATACTTATGTTATAAATGCGTAAATTGGCAAAAGGAAGCATAATTGGTTATCAGAAACAGCTAGAAGGCGTAAATTGCCAATTGTTTTTGTTAGTAAGTTCTCTCTTTCCATACTTTCTTGCCAGATCAATATGGTCGGTTGATTCTGTGGAAGGCGTGGCCGAATCAGATGTAAAAATAGCTGAAAAAATGAATTAACAAAAAAAAATGCTACTTGGAATCCAGTGCCAGCATACTGGCTGAAAAAGGCAAAAATTCGCATAAGAACAAAGAAAGAGAGACGAAGAGAGAGAAAAAAAAGGAAAGAAAATATTAGATATTTGACATAAGAAGAAAGAAAAGAAAGAGAAAAAAAGAAGAAGAAGAAAGAAAGAAATTACCCGGAAGCACCGGCGAGAGGGCTTTTGATCCGGCAACCGACGATTGGCGCGAGAGTTTCAGTGAAGGTTCCCTCTCTCCTCTTCGAAGCTAGGGTTCTTCGAATTCAATTGGGGGATATGGATCTAAGTATCAATAAATCTGCCTGTTGCAGTTATGTGGTGTTTTAAAAAACGAATTATATTACACCTCAGCTAAATTCGCATTACAACATAAAGCACAAAGGTTCTGCGCCTGGAGCCTGTGGAAAAAGCATGCATAGGCGCTTGCCTTTTGTAGGTCTTTGGGCCTGGAAAGGTTAAAGCGCCAGCAGCCGTGCCTGACTGCGCCGTGCACCTGGTCGAGCTCAAGGCGCGCTTTATAAAACTAATGACGATGGTGCTTTATGAGTTGTAGATGGACTTCTCAGATTAGCCTCAAGGAGGTCTGTTGCTATTACACTGACTTATGATATGATAAGAGATGTCTAATAAAGAGCTTTATTGGAAATTGAAGGAGAAACAGTTATATGGAACAATTGACCATTGTTTGATCTAATTATGTCCGTTGTTTTTGGTACATCTGATGTTTGGATTGGGGACTGGTTATGTACTTATGATTCCACATATGACAGAAAATTTGGAAGACTTGATGAATCTGTGAGTACTTCTCATGAACAGAACATGAGTTACATAAACAAGACTCCAAGTGCATACCTCATGCCCATTCAATGATAAAGTAAAGATAACGTCCACATTGGAAACTTTTCAACAAAAGTTGACAAACTAGGGTGGTGAAAATAGAGTGTGAGAAGTGAATCTGGATTGTTCAATCTACTTTTTACAAACACTAGATCTTGCTAGCAGAACTGTGATGTGAGATAAGTTCATATCATGAACTTGTCACTTTGTCAGGCATTTGCACCCAAACAAAGAAATAAAATGAAGAGCAGTTGCGAGCAGCACTTGCACTTGCACTTGCACTTGCATTAAAGGGAGCACATCAGGTGTGGGGGTCTATACTACATGATTACTATTCTTTAGTTTCAACTTTCCTTTAAAGGTAAGATATAATTTAGTTTGTCTTGGCCTCTGCTTCTTAGGCATTGCTGGTACTGACCTCCCTTTGACAGGATTTCTGAGTATCTAGTTATCAGCTGACCTTTTTGGTCTAATTTTTCTCTCTACTGATCTTGACCAGTTAGGCTGAGACTTCTTTTTTTGTTGTTTTTGTGATTGTTGCCATCTTGCCATCTTGCCGGCTTGCCATTGTTATGTTACTGGAGTTCCCAGATGTCAGTAGTTAGTAGTTTAGCAGTTTCCAAGGATCAGGCATGGTAACTCTAATATGCCTGTTTTTCACTTAAGGTACTTTGTTCAGTTTGGTTGGAATTACTTTTATGTGAGCATAATGTTAACAGAAGACAATCAGAACATTGTTGAAGACCTAGTTGTGTGACTTGTGGCAGAACTTATATCTCTATGAGTACCATTAAATTTAGGATTTTTTGTGTGAAATCCACCTTTTATTTATACTCATTTTTGTGAATTACCATCATTTGTACTTTTCCACTTCTCTTTGTACAGAACCTTCTTTTTATTATTATATTTCCTTTGACAGAACCACATAGATCTGGCAATGGGTTGGGTTGGGTTGGGTTGGGCCGAAATCACGTCAACCTATTTATAAACGGGTTGAGATTTTCCCAATCCAACCCGACCTGTTTAATTAAATGGGTTGAGATTTTCAACCAATCCCAACCCAGCTATAAACGGGTTGACCTGAAGTTGACCCGTTTAATTTTTTTCCCCACTTTTAAGTGTGACTTGACTATAGAATTGCGAGGTGATTTTTTTGTGGCATATCTCATAGCAAAAAGTACTACTTCAATATGTATTTGACATGAATCAAAACGTCAAATAACTATTCATTGTTGAAGAAAAAATGAGAAATAAAATCTTTCAAATAACATTCTACAGATCTATACTTGCTTGAAGAAAAAATGAGAAATAAAATCTTTCAAATAACATACTTGCTTGAACTTAAACGGGTTAGATGGGTTATTTTCGGGTTGAAAATTTCAACCTGACCCAACCCATTTAATTAAAAGGGTTGGGTTGGGTTGACCCGAATTAAATGGGTTGAAAATCTTAATGGGTTCGGGTTGGGTCAATTTTTGCCAGCTCTAGAACCACATATGATAATATTTAATCTTAAAAAGCATTTGATTTTACTGTTTTCTCTCTTGTAAATTACAAATTTGTTTCTTCCTGATTTCCCACTTCCATTCTGCTATTCTCTTCTATCTAGTTGCTTCCCTTGTTTGTCCATTCTTCTCTTTCTTTGAACAACCATTTGCCAAGCAACATCTACACAACAGCCCTCTTTATCTCTCTCCAATTTTCTTCAGCAAAAAGCTCTGTAATTAACAGCAAAGCCTCGGATGTTTATCATTTTTGACAAAACCTTTGACCATCAATGTCCTTGTCTTTTAGCTCATAGAACAATTAGGCAAGTTAAGGGCATAATTTGTAAGCTCCATTGTTACAATTGTTATGCATTACTTCAAAACCCAACCCTTTGACACTATTCCATCAGTTCTAATTGTTTTCATATAATAAATGAGGGGTCGGGGTTGGGAGAATGCATAACAGTACTGTCCAAAGTTGCGATGTCTAGAACGTGGAAGGACGGGGTAGGGAAATATCTTTAAAGAAATTTGAGCATGAAATAAAATTGGGGATTACAAGGTGAGAAAATAACTCTGCTTGCACTTGACATGAGCGGTTAATAAGGAATACTAGTACTATTCTTAAAGAAAGAGAGGTATCTTCGTCAGAGTAAAACTTATCTTAAAATTGGTTCTGTGCTAAGAAATTCATACAAGGTGGTTCTTCACAAAAGGAGTAAAAAAGGTCCAGTTTTTTTCATAATATATGTATGTAACATATACGCACTCGGTTTATTTCTTGTACTTGACTGGATTGATTCTTCTGCTTTTTTTTACTTCTGCAACTTGTCTTGATATAATATTTGTTTATTGGCTCTCATAGATTGAACTGAAGACTGCTCCAGCTGATTTTCGATTTCCAACAACAAATCAAACTCGACACTGTTTCACTAGATATATTGAGTTCCACAGGTATGGTTACTGCATTTCTGGTACTACCTCAGATGTATTAATGCATAATTTTTGCATGCAAAATATAGTTATTTAAAGACCAGATGCATTTGTCTGCCTGGACATTATCTAATGAAAATTTACTTTCAGGTGCACAGCAGCAAAGGGTGAAGAGTCTGATGCTTGTGATAAGTTTGCCAGATTCTATCGTGCTCTTTGTCCTGGTGAATGGGTAAGTCTTGTTAAAAATTCCAATAATATAGGATATACATGGTTTGTATTCTTGAACTGCTTTACTGAGGTCAATAGTATTATAGTATTTGTATGTTGTGGTTTTAAGATCTTGTCATGAAGATCCTAGTCAACCTAATTACCTTTCTTCCTGTGTCCTTCCATTGAGGATACACACTGACCTGTTTTATTAAAACCTACTGGTGCACTGGATGGTCCACACTTTAAGTTAATGAATCTTATTGAAGTGATTTTCTTTCATAATTGGTTTTCTGTTTGTGCTTCTGTTGTAGCAATCATGTTTCCGTTTCTTTGATGTTTCCATAAACCCATGTGAATTTTTTTATAAAATCATCTTGAAAGTTCTTTTAACAAGTTATTGGCACATTTTCCATAATTTTTATTGGGTTTATCATTTCTTTCACATATCCTGTTTAAAAGTGGGCATTCATTTTACCCTTGTGATCAGTCTGATTACTGAAGGGGGCAAAACATTCCGTCGTCCACACCTAATGTTCCGCTAAGTGAACCTAGTTGCAGGATGCTTTTCCACAGTATTTTTATGGCTCCGAGTCCTTTCCTAAGGAATATGAAAGCTCTGTTTGTCTTCCCAGTCGTAAAATTTGGTTCTTCAAATGTAAACCAAAAGGGCTGAGAAGTGCAGTTAAAATTACCAGCTTTCAGTGTCTGGTTTTAACGTTGAAGTTATTCACGTCTTTACAGTTTTGTCCGGTACATAACATGTTGGAAGGTTTAACGGCCCATAAAAATGGAATATTAACCGAAAACTACCCCGGAATTTGGGTTCTATTATGATTGATTGACTTCCACCTCTTATTAAATTTTTAACTTATTTATTGTATTCAAAATTTTAATATAATACAGGTAACACTCAGCCTACTTCAAGTATTTGTGTTTGTAACAGTGGTGGTGGTTAATGTAGTTTGAAATATTGAATAGGCTGGAGTTGTGGTGGTGGTGCATATGCTTAATAAAACCACTAAAGGTGACTGAATGGAATATTTGGTCATATATGGTTGGTTTTATAATTAATGTTATTAACTTTAGAGTAGTTATGTGAATAATTCCATACTTAAGGGCGGCTTATTGTCATTAATCCTTAAGCAGAACTACAAAACAAGTTTTTTTTATAGCAACCAACTAAACCAAGTTGTTGTAATGATTTATAATGTTTGCCTGTGTGATATACGTGGTTTTATATTGGTGTTTTCTCATGTAACGTTACTCACTGCTAGGAAGACGTTAAATTATGATTTTCTTGAAACTGATGGCAGGTTGATCGCTGGAACGAGCAGAGGGAGAATGGGACTTTTCCTGGTCCTCTGTAATTATTGAATGCTTCGGTACATGGAAGCTTCAAATTGCTTCTTGGTTTTCTTCTTTGACAATTCACTTGTTTTTTTTTCCAGAACCAAAATGGGTTGATAAACATTTCCATTAAAATGTAGTTTTATCCTCATTATTATTGTCCGCACAATGTGTGGCCAACATGTTGATAAATCTTCCAAGTTGGCCAGATTTATTGTTCGTTTGGATAATGTTATTTTGTGATCGCATTGCAAGTGTGGATATTCTCCATAATCTTCGTTCTTTTTATGCATTCTAAGAAAAGGTGTAAAGACGGTAGAATGGATGCTTGCTCGTAAATTACAACTTATAAGGCTTTTCTCTTCCTTGTATTGTCACTGAAGGGGAGGTTGGTTCTTTAGTTTATGTTTCTTGTTTCAAACGTGTTTATAACTACTTCAGGTATAGAGTTGGTCTAAATATAGTTGTTGCTTATTTTGTCTCTTAATTAATTGGTTGGATAATCAAATCCCAACCTTTGAGAATGAAAAAAGATTTACCTTCAAAAAAAAAAAAAAGAATGAAAAAAGATCATTAGTTCTCGAATGCTCCATAATTGGAGCACATGGGGCGAGAGGAATAGTCACTGTTCGCGGTGGACACCTTGATTATACCAAAAAAAAAATAACAAAAAAACTTAGTGTAGCCCGTTACATTTTGC

mRNA sequence

CCCGGAATCAACCTAATTAACCCGTTTGTCTACCAGAAATCCGGTGGTTAAAAACCCTATGCAGTGGCCAAGCCCGTTTGAGATTATTGTTACCAGATTATGGCCCACCCAAGCCAACAAATGGTTTCTTACGTTTACTAAAAGGAGCAATATAAAAATGGTTCAAATACGTTTTCCTGCAATTAAGAACAACAATAATCACCAAAATTTTCTCTTTCCTCATTTCGTCGTATCGGTTCTCACTCCGTTTGATCTGATCGAAAAATGGACGAGATTGAACTGAAGACTGCTCCAGCTGATTTTCGATTTCCAACAACAAATCAAACTCGACACTGTTTCACTAGATATATTGAGTTCCACAGGTGCACAGCAGCAAAGGGTGAAGAGTCTGATGCTTGTGATAAGTTTGCCAGATTCTATCGTGCTCTTTGTCCTGGTGAATGGGTTGATCGCTGGAACGAGCAGAGGGAGAATGGGACTTTTCCTGGTCCTCTGTAATTATTGAATGCTTCGGTACATGGAAGCTTCAAATTGCTTCTTGGTTTTCTTCTTTGACAATTCACTTGTTTTTTTTTCCAGAACCAAAATGGGTTGATAAACATTTCCATTAAAATGTAGTTTTATCCTCATTATTATTGTCCGCACAATGTGTGGCCAACATGTTGATAAATCTTCCAAGTTGGCCAGATTTATTGTTCGTTTGGATAATGTTATTTTGTGATCGCATTGCAAGTGTGGATATTCTCCATAATCTTCGTTCTTTTTATGCATTCTAAGAAAAGGTGTAAAGACGGTAGAATGGATGCTTGCTCGTAAATTACAACTTATAAGGCTTTTCTCTTCCTTGTATTGTCACTGAAGGGGAGGTTGGTTCTTTAGTTTATGTTTCTTGTTTCAAACGTGTTTATAACTACTTCAGGTATAGAGTTGGTCTAAATATAGTTGTTGCTTATTTTGTCTCTTAATTAATTGGTTGGATAATCAAATCCCAACCTTTGAGAATGAAAAAAGATTTACCTTCAAAAAAAAAAAAAAGAATGAAAAAAGATCATTAGTTCTCGAATGCTCCATAATTGGAGCACATGGGGCGAGAGGAATAGTCACTGTTCGCGGTGGACACCTTGATTATACCAAAAAAAAAATAACAAAAAAACTTAGTGTAGCCCGTTACATTTTGC

Coding sequence (CDS)

ATGGACGAGATTGAACTGAAGACTGCTCCAGCTGATTTTCGATTTCCAACAACAAATCAAACTCGACACTGTTTCACTAGATATATTGAGTTCCACAGGTGCACAGCAGCAAAGGGTGAAGAGTCTGATGCTTGTGATAAGTTTGCCAGATTCTATCGTGCTCTTTGTCCTGGTGAATGGGTTGATCGCTGGAACGAGCAGAGGGAGAATGGGACTTTTCCTGGTCCTCTGTAA

Protein sequence

MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEWVDRWNEQRENGTFPGPL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo13209Spo13209gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo13209.1Spo13209.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo13209.1.exon.1Spo13209.1.exon.1exon
Spo13209.1.exon.2Spo13209.1.exon.2exon
Spo13209.1.exon.3Spo13209.1.exon.3exon
Spo13209.1.exon.4Spo13209.1.exon.4exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo13209.1.utr5p.1Spo13209.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo13209.1.CDS.1Spo13209.1.CDS.1CDS
Spo13209.1.CDS.2Spo13209.1.CDS.2CDS
Spo13209.1.CDS.3Spo13209.1.CDS.3CDS
Spo13209.1.CDS.4Spo13209.1.CDS.4CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo13209.1.utr3p.1Spo13209.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo13209.1 vs. NCBI nr
Match: gi|902227232|gb|KNA20618.1| (hypothetical protein SOVF_050570 [Spinacia oleracea])

HSP 1 Score: 175.6 bits (444), Expect = 3.300e-41
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

		  

Query: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEW 60
          MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEW
Sbjct: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEW 60

Query: 61 VDRWNEQRENGTFPGPL 78
          VDRWNEQRENGTFPGPL
Sbjct: 61 VDRWNEQRENGTFPGPL 77
[Close]
BLAST of Spo13209.1 vs. NCBI nr
Match: gi|731352733|ref|XP_010687691.1| (PREDICTED: cytochrome c oxidase subunit 6b-2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 163.3 bits (412), Expect = 1.700e-37
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 1 

		  

Query: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEW 60
          M EIELKTAPADFRFPTTNQTRHCFTRYIEFHRC AAKGEESDAC KFA++YRALCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESDACGKFAQYYRALCPGEW 60

Query: 61 VDRWNEQRENGTFPGPL 78
          V+RWNEQRENGTFPGPL
Sbjct: 61 VERWNEQRENGTFPGPL 77
[Close]
BLAST of Spo13209.1 vs. NCBI nr
Match: gi|729357101|ref|XP_010545443.1| (PREDICTED: cytochrome c oxidase subunit 6b-2 [Tarenaya hassleriana])

HSP 1 Score: 161.4 bits (407), Expect = 6.400e-37
Identity = 69/76 (90.79%), Postives = 74/76 (97.37%), Query Frame = 1 

		  

Query: 2  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEWV 61
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC AAKGEES+ C+KFA+FYRALCPGEWV
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCIAAKGEESNDCEKFAKFYRALCPGEWV 62

Query: 62 DRWNEQRENGTFPGPL 78
          ++WNEQRENGTFPGPL
Sbjct: 63 EKWNEQRENGTFPGPL 78
[Close]
BLAST of Spo13209.1 vs. NCBI nr
Match: gi|729339193|ref|XP_010539459.1| (PREDICTED: cytochrome c oxidase subunit 6b-2-like isoform X1 [Tarenaya hassleriana])

HSP 1 Score: 161.4 bits (407), Expect = 6.400e-37
Identity = 70/76 (92.11%), Postives = 73/76 (96.05%), Query Frame = 1 

		  

Query: 2  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEWV 61
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC AAKGEES+ C KFA+FYRALCPGEWV
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCIAAKGEESNDCGKFAKFYRALCPGEWV 62

Query: 62 DRWNEQRENGTFPGPL 78
          +RWNEQRENGTFPGPL
Sbjct: 63 ERWNEQRENGTFPGPL 78
[Close]
BLAST of Spo13209.1 vs. NCBI nr
Match: gi|659069910|ref|XP_008452371.1| (PREDICTED: cytochrome c oxidase subunit 6b-2 [Cucumis melo])

HSP 1 Score: 161.0 bits (406), Expect = 8.300e-37
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 1 

		  

Query: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEW 60
          MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC  AKGEES  C++FA++YRALCPGEW
Sbjct: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTAKGEESGECERFAKYYRALCPGEW 60

Query: 61 VDRWNEQRENGTFPGPL 78
          VD+WNEQRENGTFPGPL
Sbjct: 61 VDKWNEQRENGTFPGPL 77
[Close]
BLAST of Spo13209.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMC5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_050570 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.300e-41
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 1 

		  

Query: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEW 60
          MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEW
Sbjct: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEW 60

Query: 61 VDRWNEQRENGTFPGPL 78
          VDRWNEQRENGTFPGPL
Sbjct: 61 VDRWNEQRENGTFPGPL 77
[Close]
BLAST of Spo13209.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BUE5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g192050 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.200e-37
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 1 

		  

Query: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEW 60
          M EIELKTAPADFRFPTTNQTRHCFTRYIEFHRC AAKGEESDAC KFA++YRALCPGEW
Sbjct: 1  MAEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLAAKGEESDACGKFAQYYRALCPGEW 60

Query: 61 VDRWNEQRENGTFPGPL 78
          V+RWNEQRENGTFPGPL
Sbjct: 61 VERWNEQRENGTFPGPL 77
[Close]
BLAST of Spo13209.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FVY7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g008580 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.300e-36
Identity = 67/76 (88.16%), Postives = 74/76 (97.37%), Query Frame = 1 

		  

Query: 2   DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEWV 61
           DEI+L+TAPADFRFPTTNQTRHCFTRYIE+HRCTAAKGE++  CDKFA+FYR+LCPGEWV
Sbjct: 105 DEIKLETAPADFRFPTTNQTRHCFTRYIEYHRCTAAKGEDAPECDKFAKFYRSLCPGEWV 164

Query: 62  DRWNEQRENGTFPGPL 78
           DRWNEQRENGTFPGPL
Sbjct: 165 DRWNEQRENGTFPGPL 180
[Close]
BLAST of Spo13209.1 vs. UniProtKB/TrEMBL
Match: A0A087GBS1_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G367900 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.700e-36
Identity = 67/76 (88.16%), Postives = 74/76 (97.37%), Query Frame = 1 

		  

Query: 2  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEWV 61
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCT AKGEES+ C++FA++YRALCPGEWV
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTIAKGEESNDCERFAKYYRALCPGEWV 62

Query: 62 DRWNEQRENGTFPGPL 78
          ++WNEQRENGTFPGPL
Sbjct: 63 EKWNEQRENGTFPGPL 78
[Close]
BLAST of Spo13209.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LH49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G037250 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.700e-36
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 1 

		  

Query: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEW 60
          MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRC   KGEES  C++FA++YRALCPGEW
Sbjct: 1  MDEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCLTVKGEESGECERFAKYYRALCPGEW 60

Query: 61 VDRWNEQRENGTFPGPL 78
          VD+WNEQRENGTFPGPL
Sbjct: 61 VDKWNEQRENGTFPGPL 77
[Close]
BLAST of Spo13209.1 vs. ExPASy Swiss-Prot
Match: CX6B2_ARATH (Cytochrome c oxidase subunit 6b-2 OS=Arabidopsis thaliana GN=COX6B-2 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.500e-38
Identity = 67/76 (88.16%), Postives = 74/76 (97.37%), Query Frame = 1 

		  

Query: 2  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEWV 61
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCT AKGEES+ C++FA++YRALCPGEWV
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWV 62

Query: 62 DRWNEQRENGTFPGPL 78
          D+WNEQRE+GTFPGPL
Sbjct: 63 DKWNEQRESGTFPGPL 78
[Close]
BLAST of Spo13209.1 vs. ExPASy Swiss-Prot
Match: CX6B3_ARATH (Cytochrome c oxidase subunit 6b-3 OS=Arabidopsis thaliana GN=COX6B-3 PE=2 SV=2)

HSP 1 Score: 157.1 bits (396), Expect = 7.500e-38
Identity = 65/76 (85.53%), Postives = 73/76 (96.05%), Query Frame = 1 

		  

Query: 2  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEWV 61
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCT AKGE+++ C++FA++YRALCPGEWV
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWV 62

Query: 62 DRWNEQRENGTFPGPL 78
          D+WNEQRE GTFPGPL
Sbjct: 63 DKWNEQRETGTFPGPL 78
[Close]
BLAST of Spo13209.1 vs. ExPASy Swiss-Prot
Match: CX6B1_ARATH (Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=1 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 6.400e-37
Identity = 63/76 (82.89%), Postives = 72/76 (94.74%), Query Frame = 1 

		  

Query: 2   DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEWV 61
           DEI+L+TAPADFRFPTTNQTRHCFTRY+E+HRC AAKG+++  CDKFA+FYR+LCP EWV
Sbjct: 115 DEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWV 174

Query: 62  DRWNEQRENGTFPGPL 78
           DRWNEQRENGTFPGPL
Sbjct: 175 DRWNEQRENGTFPGPL 190
[Close]
BLAST of Spo13209.1 vs. ExPASy Swiss-Prot
Match: COX12_SCHPO (Cytochrome c oxidase subunit 6B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cox12 PE=3 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 8.300e-21
Identity = 41/70 (58.57%), Postives = 51/70 (72.86%), Query Frame = 1 

		  

Query: 8  TAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEWVDRWNEQ 67
          T   D RFP TNQT+HCF  YI++ RC  AKGE+   C +F   Y++LCP EWV+RW+EQ
Sbjct: 17 TVGFDARFPNTNQTKHCFQSYIDYFRCIKAKGEDFVPCKQFWHAYQSLCPMEWVERWDEQ 76

Query: 68 RENGTFPGPL 78
          RENGTFP P+
Sbjct: 77 RENGTFPAPI 86
[Close]
BLAST of Spo13209.1 vs. ExPASy Swiss-Prot
Match: CX6B1_HUMAN (Cytochrome c oxidase subunit 6B1 OS=Homo sapiens GN=COX6B1 PE=1 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 8.600e-18
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 1 

		  

Query: 7  KTAPADFRFPTTNQTRHCFTRYIEFHRCT---AAKGEESDACDKFARFYRALCPGEWVDR 66
          KTAP D RFP  NQTR+C+  Y++FHRC     AKG +   C+ + R Y++LCP  WV  
Sbjct: 13 KTAPFDSRFPNQNQTRNCWQNYLDFHRCQKAMTAKGGDISVCEWYQRVYQSLCPTSWVTD 72

Query: 67 WNEQRENGTFPGPL 78
          W+EQR  GTFPG +
Sbjct: 73 WDEQRAEGTFPGKI 86
[Close]
BLAST of Spo13209.1 vs. TAIR (Arabidopsis)
Match: AT5G57815.1 (Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 159.5 bits (402), Expect = 8.500e-40
Identity = 67/76 (88.16%), Postives = 74/76 (97.37%), Query Frame = 1 

		  

Query: 2  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEWV 61
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCT AKGEES+ C++FA++YRALCPGEWV
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEESNDCERFAKYYRALCPGEWV 62

Query: 62 DRWNEQRENGTFPGPL 78
          D+WNEQRE+GTFPGPL
Sbjct: 63 DKWNEQRESGTFPGPL 78
[Close]
BLAST of Spo13209.1 vs. TAIR (Arabidopsis)
Match: AT4G28060.1 (Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 157.1 bits (396), Expect = 4.200e-39
Identity = 65/76 (85.53%), Postives = 73/76 (96.05%), Query Frame = 1 

		  

Query: 2  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEWV 61
          DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCT AKGE+++ C++FA++YRALCPGEWV
Sbjct: 3  DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTTAKGEDANECERFAKYYRALCPGEWV 62

Query: 62 DRWNEQRENGTFPGPL 78
          D+WNEQRE GTFPGPL
Sbjct: 63 DKWNEQRETGTFPGPL 78
[Close]
BLAST of Spo13209.1 vs. TAIR (Arabidopsis)
Match: AT1G22450.1 (cytochrome C oxidase 6B)

HSP 1 Score: 154.1 bits (388), Expect = 3.600e-38
Identity = 63/76 (82.89%), Postives = 72/76 (94.74%), Query Frame = 1 

		  

Query: 2   DEIELKTAPADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEWV 61
           DEI+L+TAPADFRFPTTNQTRHCFTRY+E+HRC AAKG+++  CDKFA+FYR+LCP EWV
Sbjct: 115 DEIKLETAPADFRFPTTNQTRHCFTRYVEYHRCVAAKGDDAPECDKFAKFYRSLCPSEWV 174

Query: 62  DRWNEQRENGTFPGPL 78
           DRWNEQRENGTFPGPL
Sbjct: 175 DRWNEQRENGTFPGPL 190
[Close]
BLAST of Spo13209.1 vs. TAIR (Arabidopsis)
Match: AT1G32710.1 (Cytochrome c oxidase, subunit Vib family protein)

HSP 1 Score: 61.2 bits (147), Expect = 3.200e-10
Identity = 23/63 (36.51%), Postives = 39/63 (61.90%), Query Frame = 1 

		  

Query: 9   APADFRFPTTNQTRHCFTRYIEFHRCTAAKGEESDACDKFARFYRALCPGEWVDR-WNEQ 68
           A  + RFP TN+TRHCF R++++H+C    G +++ C+    + R++CP E V + W + 
Sbjct: 59  AAVEERFPVTNETRHCFNRFMQYHKCIEKNGRDANDCNNLRDYVRSICPEELVSKIWLKS 118

Query: 69  REN 71
             N
Sbjct: 119 GRN 121
The following BLAST results are available for this feature:
BLAST of Spo13209.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902227232|gb|KNA20618.1|3.3e-41100.hypothetical protein SOVF_0505... [more]
gi|731352733|ref|XP_010687691.1|1.7e-3792.2PREDICTED: cytochrome c oxidas... [more]
gi|729357101|ref|XP_010545443.1|6.4e-3790.7PREDICTED: cytochrome c oxidas... [more]
gi|729339193|ref|XP_010539459.1|6.4e-3792.1PREDICTED: cytochrome c oxidas... [more]
gi|659069910|ref|XP_008452371.1|8.3e-3788.3PREDICTED: cytochrome c oxidas... [more]
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BLAST of Spo13209.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RMC5_SPIOL2.3e-41100.Uncharacterized protein OS=Spi... [more]
A0A0J8BUE5_BETVU1.2e-3792.2Uncharacterized protein OS=Bet... [more]
A0A0J8FVY7_BETVU1.3e-3688.1Uncharacterized protein OS=Bet... [more]
A0A087GBS1_ARAAL1.7e-3688.1Uncharacterized protein OS=Ara... [more]
A0A0A0LH49_CUCSA1.7e-3687.0Uncharacterized protein OS=Cuc... [more]
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BLAST of Spo13209.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
CX6B2_ARATH1.5e-3888.1Cytochrome c oxidase subunit 6... [more]
CX6B3_ARATH7.5e-3885.5Cytochrome c oxidase subunit 6... [more]
CX6B1_ARATH6.4e-3782.8Cytochrome c oxidase subunit 6... [more]
COX12_SCHPO8.3e-2158.5Cytochrome c oxidase subunit 6... [more]
CX6B1_HUMAN8.6e-1851.3Cytochrome c oxidase subunit 6... [more]
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BLAST of Spo13209.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4
Match NameE-valueIdentityDescription
AT5G57815.18.5e-4088.1Cytochrome c oxidase, subunit ... [more]
AT4G28060.14.2e-3985.5Cytochrome c oxidase, subunit ... [more]
AT1G22450.13.6e-3882.8cytochrome C oxidase 6B[more]
AT1G32710.13.2e-1036.5Cytochrome c oxidase, subunit ... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003213Cytochrome c oxidase, subunit VIbGENE3D1.10.10.140coord: 2..76
score: 3.2
IPR003213Cytochrome c oxidase, subunit VIbPIRPIRSF000278COX_VIbcoord: 1..77
score: 8.7
IPR003213Cytochrome c oxidase, subunit VIbPFAMPF02297COX6Bcoord: 14..73
score: 1.7
IPR003213Cytochrome c oxidase, subunit VIbunknownSSF47694Cytochrome c oxidase subunit hcoord: 4..76
score: 2.09
NoneNo IPR availablePRODOMPD015172coord: 10..77
score: 1.0
NoneNo IPR availablePANTHERPTHR11387CYTOCHROME C OXIDASE POLYPEPTIDE VIBcoord: 3..77
score: 8.5
NoneNo IPR availablePANTHERPTHR11387:SF17CYTOCHROME C OXIDASE SUBUNIT 6B-LIKE-RELATEDcoord: 3..77
score: 8.5

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006123 mitochondrial electron transport, cytochrome c to oxygen
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:1902600 proton transmembrane transport
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009507 chloroplast
cellular_component GO:0045277 respiratory chain complex IV
molecular_function GO:0004129 cytochrome-c oxidase activity