Spo13193.1 (mRNA) | SpinachBase

Overview


Name	Spo13193.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	BnaC05g47650D protein
Location	chr3 : 10239931 .. 10240209 (-)
Sequence length	279

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTTAAACAGCCAGGTAGTTGTAGCCGTAGCAAACGCATCAGCAAGCGTATGCCAATACATAGCCTGCAATCCCGAGCATTTGAGCAGCGACCAAGTCCTTCATCTTCTCTTCTGCTTCCCTTTTCAGCAAATTCGTCGCCTTTCTCTTTGCCTCTCTGCTTTCTTCTGCTTCCCTTATTCCTCCGATCCCCTTTTCTACCCTTCTCATTCTTCGTCTTCTTCTGATGATTCTCTCTCCTCGGCTGACCCCACTTACGATTTTCACTCCGATTGA

mRNA sequence

ATGGTGTTAAACAGCCAGGTAGTTGTAGCCGTAGCAAACGCATCAGCAAGCGTATGCCAATACATAGCCTGCAATCCCGAGCATTTGAGCAGCGACCAAGTCCTTCATCTTCTCTTCTGCTTCCCTTTTCAGCAAATTCGTCGCCTTTCTCTTTGCCTCTCTGCTTTCTTCTGCTTCCCTTATTCCTCCGATCCCCTTTTCTACCCTTCTCATTCTTCGTCTTCTTCTGATGATTCTCTCTCCTCGGCTGACCCCACTTACGATTTTCACTCCGATTGA

Coding sequence (CDS)

ATGGTGTTAAACAGCCAGGTAGTTGTAGCCGTAGCAAACGCATCAGCAAGCGTATGCCAATACATAGCCTGCAATCCCGAGCATTTGAGCAGCGACCAAGTCCTTCATCTTCTCTTCTGCTTCCCTTTTCAGCAAATTCGTCGCCTTTCTCTTTGCCTCTCTGCTTTCTTCTGCTTCCCTTATTCCTCCGATCCCCTTTTCTACCCTTCTCATTCTTCGTCTTCTTCTGATGATTCTCTCTCCTCGGCTGACCCCACTTACGATTTTCACTCCGATTGA

Protein sequence

MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFPYSSDPLFYPSHSSSSSDDSLSSADPTYDFHSD

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo13193	Spo13193	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo13193.1	Spo13193.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13193.1.CDS.1	Spo13193.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo13193.1.exon.1	Spo13193.1.exon.1	exon

Homology

[Close]

BLAST of Spo13193.1 vs. NCBI nr
Match: gi|902210780|gb|KNA16530.1| (hypothetical protein SOVF_088180 [Spinacia oleracea])

HSP 1 Score: 179.5 bits (454), Expect = 2.700e-42
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


		  
Query: 1  MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP 60
          MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP
Sbjct: 1  MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP 60

Query: 61 YSSDPLFYPSHSSSSSDDSLSSADPTYDFHSD 93
          YSSDPLFYPSHSSSSSDDSLSSADPTYDFHSD
Sbjct: 61 YSSDPLFYPSHSSSSSDDSLSSADPTYDFHSD 92

[Close]

BLAST of Spo13193.1 vs. NCBI nr
Match: gi|870864527|gb|KMT15622.1| (hypothetical protein BVRB_3g056140 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 141.4 bits (355), Expect = 8.100e-31
Identity = 80/97 (82.47%), Postives = 83/97 (85.57%), Query Frame = 1


		  
Query: 1  MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP 60
          MVLNSQ+VVAVAN SA+VCQYIACNPEHLSS QVL LLFCFPFQQ RRLSLCLSAFFCFP
Sbjct: 1  MVLNSQMVVAVANISANVCQYIACNPEHLSSAQVLDLLFCFPFQQFRRLSLCLSAFFCFP 60

Query: 61 YSSDPLFYPS-HSSSSSDDSLSSADPT----YDFHSD 93
          YSSDPLFYPS  SSSSSDDSLSS+       YD HSD
Sbjct: 61 YSSDPLFYPSPSSSSSSDDSLSSSSALLITGYDSHSD 97

[Close]

BLAST of Spo13193.1 vs. NCBI nr
Match: gi|604336146|gb|EYU39992.1| (hypothetical protein MIMGU_mgv1a017913mg [Erythranthe guttata])

HSP 1 Score: 102.8 bits (255), Expect = 3.200e-19
Identity = 57/92 (61.96%), Postives = 65/92 (70.65%), Query Frame = 1


		  
Query: 1  MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP 60
          MV NS +VV VA  SA+ CQYIACNPE LSSDQVLHLLFCFPFQ +RRL+LCL  FFCF 
Sbjct: 1  MVFNSPLVVGVAKVSANACQYIACNPERLSSDQVLHLLFCFPFQHLRRLALCLWTFFCFS 60

Query: 61 YSSDPLFYPSHSSSSSDDSLSSADPTYDFHSD 93
            ++P ++ S SSSSS  S       YDF  D
Sbjct: 61 PPNNPNYFTSSSSSSSSSSFDF--DVYDFDQD 90

[Close]

BLAST of Spo13193.1 vs. NCBI nr
Match: gi|698503432|ref|XP_009797310.1| (PREDICTED: uncharacterized protein LOC104243757 [Nicotiana sylvestris])

HSP 1 Score: 96.7 bits (239), Expect = 2.300e-17
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1


		  
Query: 1  MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP 60
          MV NS VVV+VAN SA  CQ+IACNPE LSSDQVL+LLFC+PFQQ+ R +LCL  FFCFP
Sbjct: 1  MVFNSPVVVSVANLSADFCQFIACNPERLSSDQVLYLLFCYPFQQLHRFTLCLWTFFCFP 60

Query: 61 YSSDPLFYPS 71
            +  L +PS
Sbjct: 61 LPNSSLSFPS 70

[Close]

BLAST of Spo13193.1 vs. NCBI nr
Match: gi|697181005|ref|XP_009599486.1| (PREDICTED: uncharacterized protein LOC104095140 [Nicotiana tomentosiformis])

HSP 1 Score: 96.3 bits (238), Expect = 3.000e-17
Identity = 47/70 (67.14%), Postives = 55/70 (78.57%), Query Frame = 1


		  
Query: 1  MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP 60
          MV NS VVV+VAN SA  CQYIACNPE LSSDQVL+L+FC+PFQQ+ R +LCL  FFCFP
Sbjct: 1  MVFNSPVVVSVANLSADFCQYIACNPERLSSDQVLYLIFCYPFQQLHRFTLCLWTFFCFP 60

Query: 61 YSSDPLFYPS 71
            +  L +PS
Sbjct: 61 LPNTYLSFPS 70

[Close]

BLAST of Spo13193.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAL7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_088180 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.900e-42
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1


		  
Query: 1  MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP 60
          MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP
Sbjct: 1  MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP 60

Query: 61 YSSDPLFYPSHSSSSSDDSLSSADPTYDFHSD 93
          YSSDPLFYPSHSSSSSDDSLSSADPTYDFHSD
Sbjct: 61 YSSDPLFYPSHSSSSSDDSLSSADPTYDFHSD 92

[Close]

BLAST of Spo13193.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CPX8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g056140 PE=4 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 5.700e-31
Identity = 80/97 (82.47%), Postives = 83/97 (85.57%), Query Frame = 1


		  
Query: 1  MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP 60
          MVLNSQ+VVAVAN SA+VCQYIACNPEHLSS QVL LLFCFPFQQ RRLSLCLSAFFCFP
Sbjct: 1  MVLNSQMVVAVANISANVCQYIACNPEHLSSAQVLDLLFCFPFQQFRRLSLCLSAFFCFP 60

Query: 61 YSSDPLFYPS-HSSSSSDDSLSSADPT----YDFHSD 93
          YSSDPLFYPS  SSSSSDDSLSS+       YD HSD
Sbjct: 61 YSSDPLFYPSPSSSSSSDDSLSSSSALLITGYDSHSD 97

[Close]

BLAST of Spo13193.1 vs. UniProtKB/TrEMBL
Match: A0A022RHX9_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017913mg PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.200e-19
Identity = 57/92 (61.96%), Postives = 65/92 (70.65%), Query Frame = 1


		  
Query: 1  MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP 60
          MV NS +VV VA  SA+ CQYIACNPE LSSDQVLHLLFCFPFQ +RRL+LCL  FFCF 
Sbjct: 1  MVFNSPLVVGVAKVSANACQYIACNPERLSSDQVLHLLFCFPFQHLRRLALCLWTFFCFS 60

Query: 61 YSSDPLFYPSHSSSSSDDSLSSADPTYDFHSD 93
            ++P ++ S SSSSS  S       YDF  D
Sbjct: 61 PPNNPNYFTSSSSSSSSSSFDF--DVYDFDQD 90

[Close]

BLAST of Spo13193.1 vs. UniProtKB/TrEMBL
Match: K4D299_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.200e-18
Identity = 55/91 (60.44%), Postives = 64/91 (70.33%), Query Frame = 1


		  
Query: 1  MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP 60
          MV +S ++V VAN SA +CQYIACNPE LSSD+VL+LLFCFP QQ RR +LCL  FFCFP
Sbjct: 1  MVFSSPIIVGVANVSADLCQYIACNPERLSSDEVLYLLFCFPCQQFRRFALCLWTFFCFP 60

Query: 61 YSSDPLFYPSHSSSSSDDSLSSADPTYDFHS 92
            +  L +PS SSSSS  S  S     D HS
Sbjct: 61 LPNPYLSFPSFSSSSSSLSSDSDLDLEDSHS 91

[Close]

BLAST of Spo13193.1 vs. UniProtKB/TrEMBL
Match: M1AFE5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008382 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 4.200e-18
Identity = 53/84 (63.10%), Postives = 62/84 (73.81%), Query Frame = 1


		  
Query: 1  MVLNSQVVVAVANASASVCQYIACNPEHLSSDQVLHLLFCFPFQQIRRLSLCLSAFFCFP 60
          MV +S ++V VAN SA +CQYIACNPE LSSD+VL+LLFCFP QQ RR +LCL  FFCFP
Sbjct: 1  MVFSSPIIVGVANVSADLCQYIACNPERLSSDEVLYLLFCFPCQQFRRFALCLWTFFCFP 60

Query: 61 YSSDPLFYPSHSSSSSDDSLSSAD 85
            +  L +PS SSSSS  S S  D
Sbjct: 61 LPNPYLSFPSFSSSSSLSSDSDLD 84

The following BLAST results are available for this feature:

BLAST of Spo13193.1 vs. NCBI nr
BLAST of Spo13193.1 vs. UniProtKB/TrEMBL
BLAST of Spo13193.1 vs. ExPASy Swiss-Prot
BLAST of Spo13193.1 vs. TAIR (Arabidopsis)

BLAST of Spo13193.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902210780\|gb\|KNA16530.1\|	2.7e-42	100.	hypothetical protein SOVF_0881...	[more]
gi\|870864527\|gb\|KMT15622.1\|	8.1e-31	82.4	hypothetical protein BVRB_3g05...	[more]
gi\|604336146\|gb\|EYU39992.1\|	3.2e-19	61.9	hypothetical protein MIMGU_mgv...	[more]
gi\|698503432\|ref\|XP_009797310.1\|	2.3e-17	67.1	PREDICTED: uncharacterized pro...	[more]
gi\|697181005\|ref\|XP_009599486.1\|	3.0e-17	67.1	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo13193.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RAL7_SPIOL	1.9e-42	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CPX8_BETVU	5.7e-31	82.4	Uncharacterized protein OS=Bet...	[more]
A0A022RHX9_ERYGU	2.2e-19	61.9	Uncharacterized protein OS=Ery...	[more]
K4D299_SOLLC	4.2e-18	60.4	Uncharacterized protein OS=Sol...	[more]
M1AFE5_SOLTU	4.2e-18	63.1	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo13193.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo13193.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35104	FAMILY NOT NAMED	coord: 2..85 score: 2.4
None	No IPR available	PANTHER	PTHR35104:SF2	SUBFAMILY NOT NAMED	coord: 2..85 score: 2.4