Spo12670.1 (mRNA) | SpinachBase

Overview


Name	Spo12670.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Tetratricopeptide repeat (TPR)-like superfamily protein
Location	SpoScf_03378 : 1612 .. 8905 (+)
Sequence length	1374

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAAGCAAAATCTGGTAAGCTTTTTACTCCTATTTTCTCTTTCCCCAATTTGCATTGATTTTATTTTGGTCAATTCTTTCAAAACAATTTGATTTTCTTCTTCCTTTTGATTGTTTTAGTTGTATGCTTTACTTGTTGTATAAAACCAGAAAATTAGCTAAATCACTGCATAAGAATGAAACTGCATAAATGTGAAATTACCCAGTTAGTTGTTAATCTTGTAGTCATGCTGAAGTTTATTACACCGTGTACTAGAAAAGGGGGCATGGAATTTCCATTTGATTACCGGACCGCCCTCCGCTAAGTCGCTAACTGGCCAGACGGCCGTCGTGGCACCACCGCACCAACCACCAACAACTAGGATTTGGGGTTTAGCCGTTATTGTTGGGGTTTGGGACTCTTTTAACTTTGAAGGATTCGCAACATGGATATAGTAGTAATTTTATTGCTTTAGATTATTATTCCAAACAGTAGTATTTACTACGGAGTATTTTGCATTGGTTTTGGTTGATCAGTCAAAATGTTCCATGAATCATGATGACCTTTAACTTGGGGAAATATCAAGCCTGAGATGTTTGAGACCCAAATGTTTCTCATGGACCAGATGATTACCCCTAGAGTCCTATTCGGTGGTTAGAACCATCTATTTCAAATGTCGTTTCAAGTTTTCAACGGTATAAAAATTGTATAATGTTGTTGCAGCTGGGGTTTTAACTTGGATAATGTAGAGAGATTTAGGCATTTAGCTAGGTTATTTGTCATTCGTAGTCCACGATTGGAGTGAATGATGTTTTGTTTGAGAAAAACGGATTACAGAATGTGAGGGGCTAAGTTTCTTTTCTAAACGAACTTGTACTCAAAATGTATACGAGTTCTTAATTATCTAGGGTTGAGTGTTTGTTTTGGTTATTGATCAATGTGGGGTTCCCTATCATACCTAAAATCTTGCATCGCCACTGGTTTTTGATGATCAATGTTTTGATTCATTTCAGAATTTTCAAGGTTTTCTAAGTGACTTGCAAGACTGGGAACATTCTCTAAAAGACAAGGATACGAAGTTGGAGAATCAGAATCCTCAAAAGGGTAAATTGGTAATTTTTCTTCTTCGTGGCTCTTACTCTACATCTTCCGCAATAAATGGTGTGTATGCAATTGACATGAAAATGTACCAATTTTGTTTATAATATGATGAGTTTGGTTTTAGTTGACTGTTTTCATTCAAAGTGATCATTGACATCAGAATTACTACTATTGTTACCAAGTTGCTTTGCCTAGTTATTTTTTTTTGTCATTGGTTTGCCTTATATAGCTGTGGTAGTGTGGTGATGTTTATTTTAGAAACATGTGTTGTTGCAATTGTTGGTGTGCATTTTTTGGGGTGGGGGATGGGCGAAGGGATAGTGAGGCAGATAGGATCACGAAGGGTCCGGTCTCTCTTTGTTTCCAGTTGATATTCATGTTTGTGTAAACTATTAAGTAGTGTGATGAGATACTAATTTGTTGCAATTGGTCGTTTCACTGTATTAATCCTTCAGAAACTTGAAGTGGTTAGTGAGGACAAACGATCTGATGGTAAAAGTAATGCGTCTTATTTGAGTAGTAGTACGAGTCAGCATCGACTTTCTACAAACTACGATCCATTGAGCCAGATGTCAAGTAGTTTGATGACTAACGAGAATACTGTGGATGCTGCCTCTGAGAAAGATCTGGTAGAATATACTTTCCTCTAATCTTCTTCCTCTCCACTTTCATCTTTTTCATTGCTCTGCCAATTTCTCCTGTGGCTCTAGCCCCTATGAAATTGATCGAATTAATGGAGCATTATATGCAAATTTTCAGGGTAATGAATATTTTAAGCAAAAGAAGTTCAACGAAGCTATAGACTGCTATTCTAGAAGCATTGCGTTCTCGCCAACAGCTGTGGCTTATGCAAATAGGGCAATGGCCTATCTCAAAATAAAAAGGTAAGCTACAGTTTCAAAATTTCAATCATCAGATACATTGCCATTCGGATTGATAGAGTTGTAGCAACTGTGAACTCCCTGTTTTTGCACCTTTTATATTTATATGTTCTTTTTCGGGTTCAACTATATCGAAGTTGCAACATGTTAGTGGTGGAAGATTGTACTTTTGGTCCTTGATTCTAATTTAAACTTCTCCTGGTCTTTCAGATTTCAAGAAGCTGAGAATGATTGCACGGAGGCCCTAAACTTAGATGATCGCTACATCAAAGCATATTCACGCCGAGCTACAGCCAGAAAGGAACTCAGGAAGCTCAGAGACTCGATAGAGGGTATGTTACATTGACGAAAATTGTGCCATTTTTCTAAGTATAAAGTTGGGGGAAAATTCTCAATTAAATTGCTTGCAGATGTTGAGTTTGCATTGAGGTTAGAGCCACAAAATGAAGATCTCAAGAAACAACGTGCCGAAGTGAAGTCCTTGCTTGAGAAGGTTTTTTTCCCTCTTTCTGTTACATATGATATCATTTTCTCTTATCAATCTTGAAGGAGTTTATTTGTTTTGAACTTTCTTCATTCATGTTATGTTTGGATGGAGGTTAGGTGGCTTCAATCCTGATAGCCAAATATTATCATTATTTTCTCAACTATGATATATGGAATTCCTTTCGTTTCCTATATTTCATTGGATGTTCTGTTTAATACGCTGAGCTTAACTTGTAAATGGAAGCATGAGTAGACAACTGAAAAAAAAACCGAACTAGGAAGAATGAGTACGGAATTGAGATCAGTTCCTTTTGACGAGAAGGTGCTGTAGAACTGTCAAGATTATGAGTGCATATTGCCTTCGACACAGTTTACTATGTTGAACATTATCAATGTAGTTGAAGAGCAAAATGCCAGCAATGCAAGCAAGTGATGCATAAAATGAGAGGAATACAGTCAAATTCATTCACCAAATCATTGAGTATTTATAGCTTTTCTCTAGGAGTATATATAGTACCTTGTACTATTTCCTACAATCACTCACACCCATACAAGCATTATTCTAACAGCTAATCACTGGTGATGTCATACACCAATGATGTCATAGAAAAGACAAGAAAACGGCTAGAAATACAATGGCTACAGCTAGCTCATTGCTTAGGTAAAAACAGATAAAAACCTAGGAATAAAAACTTTAGGAGAGGCATTATACGGTGAGTAATGTGCATGGCTGCTCTGATGGACTTCATTCTTCAACAGTAACGTAGAAATTGGTGTACTGCAGCTGAGATCCTGCTTGTGATACAAGATATAATTGCTTTTTCCACTTCTAGAAGTGATTTGGTGCTAACAGACACTTAGAACATGTACTTGTCAAGCTTAAATTATATCTTTTGTAAGTTGTTGAATTTAGTCATTTCTCCACATATCAAGATCCCATTTAAAGAAGCAAAGGCAAAGCAAAATAAGGAAAGACAAAAAGTGTTCTGAATTCATGCAAGTCAAGGTTGCTAGCTTGTTATGTATTTGCTTTAGAATGGTAGCTTCACTTGGGTCTAGAACCTAAACATCTGTTAATGTACCACTTATATAGTTGTTAAAAAAAAAGCTGTACCACTTCTATCCTGCAAATATGGTGTACATTTTTGTTTTATTTACTTTATTGTTATGGAAATATAGTGTTATTGAATCTTCCAGTTAAATTTGTAGGCAATTCTTGCAAAAGCTGCTGGAGCAGCGACGAAAGCTGCACCTGTAGTGAAAGAAGTAGATACCAAGGTGGATGCAAAAGGGCGTGAAAAGCGTGCCCTATCTGCTCCTGAAAGAAGTAAGAAATTGGGAATAGATGTTCTTCCAGATAATATACAGGTATGGACTTCTTATGCAATTTAATAGTTGGAATGGTTTTGGCTTGTTTGAATGTTTATAATAGAGTTAATAAATCCATCTCATGGTCCAAAATATTGCGTAATTCTTATTGAATTTTACGGAGTATAAAAACAGCATGTGAGTGGTTTCTTTAGACACTTTTTCTTTCATGTGTATCATCTTTTGATTTGTGACAGTTAATTTCGCTGTATGATCAACAGTTGAACAAAACGGTCGATTCTGGAGATACAATGATCAAAAGCAAGACAAATGGAGATAGAAACAGACAAAAAGTAAATGGCTTGCATGAAATTGCACCAGGCAGTTCTCATTTGGTAAGTTCTCGTCATTGAGTTCATACAGCTATGCCATTCACGTATTATTTGGTTGAAATATTCATTCTGTTCTAATTGTGTGAGAAATGTGAAATTCAACTTCATGATTTTACATGGAATTGTTCCCCAAAACTTATAAACTCTTGCTTTATGAGGTCCGTTCATAGTCATTTTTAACTTAGTGTTTGTCATTTGAACAGAAAAATGATAAAAGTGAGAATAGAGACCTTGGGTTATCAGTACAAGAGCTTGCTTCTCGAGCTGCATCTCGAGCCAGGGCAGAAGCTGCTAAAAATATCAGCACCCCAAATTCAGCTTATCAATTTGAGGTTTCTTGGAGAGGGTTTTGTGGCGATCGTTCTCTACAAACGCATTTATTGAAGGTTTGATATTGTTAATATTTCTCCAAGGCTTTAGACTGTGTTTCTGAGACATAATACTTCAGTTGTGCGTTTAAGACTTTAAGTATACATTATCACGAACAGATGTTTACGTTTCATGACCTTCTTCCTCGATTTTCCTGATGATATTCAAGTTTTTTTCTTTCTTTTTGGAATGTGTAGGTCACTCAACCTGATACACTGCCGCAGATTTTTAAAAATGCCTTGACCGCTCCCTTACTCATTGATATTGTCAAGTGCATTGCAACATTTTTTATGTAAGTAAAGGCATCATGTACTGTTGTATTACTTTTATATATATATCGGGGTTACCTATCTCTAATCATCCCATTTATCCTTTTGCTGCATTTGTTGACTTGTTATAGTGAGGAGACTGAGCTTGCTGTCAAGTATCTGGAGAATTTGACCAAGATCCCAAGATTTGACATGATCATCTTGTGCCTCTCTCCCGATAACAAGGCTGGTATGTGCAACTATCAGATGCAAGCGAGCTATTTACTCCGCATATTGTTCTATTTAACTATTAGGATTGCATGCAGTAAGATAAGATCACTTCATTAACTTGGTGTCAACTTGCAATTTTACACGGTTATGCAGAAAGTAAAGATGGTTGTGGTCCGGGTCAGGTCGGGCTGTCGTGGGTCTAAACGGGCCCGGCCCAAGCCAAGACCACTCTGCATCGGGCCATGCCTGGGTAGAAAGTTCGAAAAAACGCCCAGGCCCACGGGCCTCGTGCCTATGCCTAAATATACTAAATTTAGTGTGCTTGCCGTGTCGTGCTTTTTCAAAAAATGCGGCCCAGTCCACAGTTTCATGCTCGTGCTGGGCCGTGCTTTTTTTTCGTGCCGTGCCGGGTAGGTCATCGGGCCGGGCTGGGCCACAGCCATCATTATGCAGAAGGACACTGATTGTACTTGGAATCAATGAAATTTAGACTAATGCAATACCTTTTCTACAGAACTTCGCAGGACATGGGATGAGGTATTTCTCAGCAAGGCTATTCCGATTAAATTTGTGGATTTACTTAGCGAACTCCATACAAGGTATTGCCCTCGACAATGATCTACATTTGCCTCTCTGGAAGTTTTGATCCATCAGGAATCCCTGTTCTGAGTAAACTGACTTTATGTTTAGATTGACTCAGTATTTTGCATACTCTTTGAATATAACCTTTGTACACATTGTACATTCTACTAAAGCCGAGTAGGAGTCTTCTTTCTATTTATATCCGTGATTCCAGTTTAGCGTGAGAGTTGGTTAGTTATTTTGCTTCCCATTGCCTTCGTTTCTTTGGCGATTATGGTAGCGAATGTTACATACCTGCTTTTAGTAAACTTGTCCTTTCTACTTAACATAAATGGTGTACTATATGGACATCTGCTCACCAATTTGATTTTCTTTAATATTTGGGTCATTTGCTTGCATAAAACCTCTTAATTTGAGAGTATTGAGACAGGTAATGTTTAGACATGCTCAAAAAATTATGAATGATATTGGAATTGATCAACAAGAGTGTGAGTAAGTAATGTAAGGTTTTGTTCTCTTCAATCGAATTGAGGTGTTATGATCTAAATTAATTTAGGTGTAGTCTAAGCGTAGTTTGGTTATGGTCTGAATATTTCTAGTCTGATTGAACTGGACCAATATCTTCGCTTGATTAAATTTTGACTGTTTATTGATGTTAAGTTTATGAGAATCGATATCTTGTGAATGTTTGTTAGATTTGTTTCAATGTGTACTTGGCAAAGTTCGAGTATGAACTATGAAAAGTAACAAGTGTTCTATCCTAATTGGACTTGTGGATTGAGAGAGGCCAACCAATGCATCAATGGAGTATTCATGAAGGCCTTGAAAGGTGAAATCATTGATTGGCAAAACTTGTACTTGCCTCACTAGCATTAGCAAGTTATTATGCATCATCAAACAGTTGAGAGTTGAGACCTTATAAGTAAAGATGGCTGTGTGGCCGGCCCGGACCGAAGCCCGACCCTAGCCGGCACGAAAAAAGACCGGCCCCACACTGGCACGAAGTCGTGAGTCGTGGGCCGGGTCTGTGCCTTAATTTTTTGGAAAAAGCATGACAAGGCACGACTCGACCCGGCACGACAAGCACCCAAAATTTTGTAAAGACGACCTGTCCCGGCCCGACACGAAAGCTTGTGGGCTCGTGCTGGGTCCGGGCCTTGTTTTGAACTTTTTGGCCCGGCATGATACAACGTGGGCCTAGATTGGGCCTAGCTTGTTTAGGCCTACCACCCGTGGGCTCGGCACGAAGTCCGGCCTGGCCCATAGCCATCTTTACTTATAAGTAGATATACACATGCGGTTGAATTGTCCTACGTCGGAAAAGGAAAGAGATAATAATAAACTTATAAGTCTGGAAAGCTGGAACTACTCTTCCTATTGTCGATTGGTTTTAAGAATGAATCTCATATCAGAGTTCATAGTGGATAACTTTTCTCCTTGGTTGTGTACGACTAGACATATAGACGAAATTCATTACAAATGTGAAAAAGTTGAACCCCCCATGACTTGGATGACAAGATAGAGTCCATCACCGCAAAATGTTTTGACATTTTGTGGAGATGGGGTTAGGTTTTATAGGTGAAAGTGGTTTGGTGTGGGTTGTGGAAATTTATTTGTGGGGTATTTTTTGAAGTACTCTCTTTTCATGTGGCCTTTCAAGAAATTGCTTGCATTTCAAGACAATGTAGCCAAAACAATTATGCAAGTACATAA

mRNA sequence

ATGTCTAAGCAAAATCTGAATTTTCAAGGTTTTCTAAGTGACTTGCAAGACTGGGAACATTCTCTAAAAGACAAGGATACGAAGTTGGAGAATCAGAATCCTCAAAAGGGTAAATTGAAACTTGAAGTGGTTAGTGAGGACAAACGATCTGATGGTAAAAGTAATGCGTCTTATTTGAGTAGTAGTACGAGTCAGCATCGACTTTCTACAAACTACGATCCATTGAGCCAGATGTCAAGTAGTTTGATGACTAACGAGAATACTGTGGATGCTGCCTCTGAGAAAGATCTGGGTAATGAATATTTTAAGCAAAAGAAGTTCAACGAAGCTATAGACTGCTATTCTAGAAGCATTGCGTTCTCGCCAACAGCTGTGGCTTATGCAAATAGGGCAATGGCCTATCTCAAAATAAAAAGATTTCAAGAAGCTGAGAATGATTGCACGGAGGCCCTAAACTTAGATGATCGCTACATCAAAGCATATTCACGCCGAGCTACAGCCAGAAAGGAACTCAGGAAGCTCAGAGACTCGATAGAGGATGTTGAGTTTGCATTGAGGTTAGAGCCACAAAATGAAGATCTCAAGAAACAACGTGCCGAAGTGAAGTCCTTGCTTGAGAAGGCAATTCTTGCAAAAGCTGCTGGAGCAGCGACGAAAGCTGCACCTGTAGTGAAAGAAGTAGATACCAAGGTGGATGCAAAAGGGCGTGAAAAGCGTGCCCTATCTGCTCCTGAAAGAAGTAAGAAATTGGGAATAGATGTTCTTCCAGATAATATACAGTTAATTTCGCTGTATGATCAACAGTTGAACAAAACGGTCGATTCTGGAGATACAATGATCAAAAGCAAGACAAATGGAGATAGAAACAGACAAAAAGTAAATGGCTTGCATGAAATTGCACCAGGCAGTTCTCATTTGAAAAATGATAAAAGTGAGAATAGAGACCTTGGGTTATCAGTACAAGAGCTTGCTTCTCGAGCTGCATCTCGAGCCAGGGCAGAAGCTGCTAAAAATATCAGCACCCCAAATTCAGCTTATCAATTTGAGGTTTCTTGGAGAGGGTTTTGTGGCGATCGTTCTCTACAAACGCATTTATTGAAGGTCACTCAACCTGATACACTGCCGCAGATTTTTAAAAATGCCTTGACCGCTCCCTTACTCATTGATATTGTCAAGTGCATTGCAACATTTTTTATTGAGGAGACTGAGCTTGCTGTCAAGTATCTGGAGAATTTGACCAAGATCCCAAGATTTGACATGATCATCTTGTGCCTCTCTCCCGATAACAAGGCTGTACTCTCTTTTCATGTGGCCTTTCAAGAAATTGCTTGCATTTCAAGACAATGTAGCCAAAACAATTATGCAAGTACATAA

Coding sequence (CDS)

ATGTCTAAGCAAAATCTGAATTTTCAAGGTTTTCTAAGTGACTTGCAAGACTGGGAACATTCTCTAAAAGACAAGGATACGAAGTTGGAGAATCAGAATCCTCAAAAGGGTAAATTGAAACTTGAAGTGGTTAGTGAGGACAAACGATCTGATGGTAAAAGTAATGCGTCTTATTTGAGTAGTAGTACGAGTCAGCATCGACTTTCTACAAACTACGATCCATTGAGCCAGATGTCAAGTAGTTTGATGACTAACGAGAATACTGTGGATGCTGCCTCTGAGAAAGATCTGGGTAATGAATATTTTAAGCAAAAGAAGTTCAACGAAGCTATAGACTGCTATTCTAGAAGCATTGCGTTCTCGCCAACAGCTGTGGCTTATGCAAATAGGGCAATGGCCTATCTCAAAATAAAAAGATTTCAAGAAGCTGAGAATGATTGCACGGAGGCCCTAAACTTAGATGATCGCTACATCAAAGCATATTCACGCCGAGCTACAGCCAGAAAGGAACTCAGGAAGCTCAGAGACTCGATAGAGGATGTTGAGTTTGCATTGAGGTTAGAGCCACAAAATGAAGATCTCAAGAAACAACGTGCCGAAGTGAAGTCCTTGCTTGAGAAGGCAATTCTTGCAAAAGCTGCTGGAGCAGCGACGAAAGCTGCACCTGTAGTGAAAGAAGTAGATACCAAGGTGGATGCAAAAGGGCGTGAAAAGCGTGCCCTATCTGCTCCTGAAAGAAGTAAGAAATTGGGAATAGATGTTCTTCCAGATAATATACAGTTAATTTCGCTGTATGATCAACAGTTGAACAAAACGGTCGATTCTGGAGATACAATGATCAAAAGCAAGACAAATGGAGATAGAAACAGACAAAAAGTAAATGGCTTGCATGAAATTGCACCAGGCAGTTCTCATTTGAAAAATGATAAAAGTGAGAATAGAGACCTTGGGTTATCAGTACAAGAGCTTGCTTCTCGAGCTGCATCTCGAGCCAGGGCAGAAGCTGCTAAAAATATCAGCACCCCAAATTCAGCTTATCAATTTGAGGTTTCTTGGAGAGGGTTTTGTGGCGATCGTTCTCTACAAACGCATTTATTGAAGGTCACTCAACCTGATACACTGCCGCAGATTTTTAAAAATGCCTTGACCGCTCCCTTACTCATTGATATTGTCAAGTGCATTGCAACATTTTTTATTGAGGAGACTGAGCTTGCTGTCAAGTATCTGGAGAATTTGACCAAGATCCCAAGATTTGACATGATCATCTTGTGCCTCTCTCCCGATAACAAGGCTGTACTCTCTTTTCATGTGGCCTTTCAAGAAATTGCTTGCATTTCAAGACAATGTAGCCAAAACAATTATGCAAGTACATAA

Protein sequence

MSKQNLNFQGFLSDLQDWEHSLKDKDTKLENQNPQKGKLKLEVVSEDKRSDGKSNASYLSSSTSQHRLSTNYDPLSQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCYSRSIAFSPTAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVEFALRLEPQNEDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDAKGREKRALSAPERSKKLGIDVLPDNIQLISLYDQQLNKTVDSGDTMIKSKTNGDRNRQKVNGLHEIAPGSSHLKNDKSENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSWRGFCGDRSLQTHLLKVTQPDTLPQIFKNALTAPLLIDIVKCIATFFIEETELAVKYLENLTKIPRFDMIILCLSPDNKAVLSFHVAFQEIACISRQCSQNNYAST

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo12670	Spo12670	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo12670.1	Spo12670.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12670.1.exon.1	Spo12670.1.exon.1	exon
Spo12670.1.exon.2	Spo12670.1.exon.2	exon
Spo12670.1.exon.3	Spo12670.1.exon.3	exon
Spo12670.1.exon.4	Spo12670.1.exon.4	exon
Spo12670.1.exon.5	Spo12670.1.exon.5	exon
Spo12670.1.exon.6	Spo12670.1.exon.6	exon
Spo12670.1.exon.7	Spo12670.1.exon.7	exon
Spo12670.1.exon.8	Spo12670.1.exon.8	exon
Spo12670.1.exon.9	Spo12670.1.exon.9	exon
Spo12670.1.exon.10	Spo12670.1.exon.10	exon
Spo12670.1.exon.11	Spo12670.1.exon.11	exon
Spo12670.1.exon.12	Spo12670.1.exon.12	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo12670.1.CDS.1	Spo12670.1.CDS.1	CDS
Spo12670.1.CDS.2	Spo12670.1.CDS.2	CDS
Spo12670.1.CDS.3	Spo12670.1.CDS.3	CDS
Spo12670.1.CDS.4	Spo12670.1.CDS.4	CDS
Spo12670.1.CDS.5	Spo12670.1.CDS.5	CDS
Spo12670.1.CDS.6	Spo12670.1.CDS.6	CDS
Spo12670.1.CDS.7	Spo12670.1.CDS.7	CDS
Spo12670.1.CDS.8	Spo12670.1.CDS.8	CDS
Spo12670.1.CDS.9	Spo12670.1.CDS.9	CDS
Spo12670.1.CDS.10	Spo12670.1.CDS.10	CDS
Spo12670.1.CDS.11	Spo12670.1.CDS.11	CDS
Spo12670.1.CDS.12	Spo12670.1.CDS.12	CDS

Homology

[Close]

BLAST of Spo12670.1 vs. NCBI nr
Match: gi|731327676|ref|XP_010674646.1| (PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 604.0 bits (1556), Expect = 2.200e-169
Identity = 326/433 (75.29%), Postives = 369/433 (85.22%), Query Frame = 1


		  
Query: 1   MSKQNLNFQGFLSDLQDWEHSLKDKDTKLENQNPQKGKLKLEVVSEDKRSDGKSNASYLS 60
           MS Q+LNF+GFL+DLQDWEHS+KDKD KL+NQ+  K K K+EVVSEDK+   K+ A+ LS
Sbjct: 1   MSNQSLNFEGFLNDLQDWEHSIKDKDKKLKNQDSHKSKSKVEVVSEDKQPVVKNTATSLS 60

Query: 61  SSTSQHRLSTNYDPLSQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCYSRSIAF 120
           +STSQHR   NYD LS MSSSL+ +ENTVDAASEKDLGNEYFKQ+KFNEAIDCYSRSIA 
Sbjct: 61  NSTSQHRPPMNYDRLSHMSSSLIADENTVDAASEKDLGNEYFKQRKFNEAIDCYSRSIAL 120

Query: 121 SPTAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIED 180
           SPTAVAYANRAMAYLKI+RFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRD++ED
Sbjct: 121 SPTAVAYANRAMAYLKIRRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDALED 180

Query: 181 VEFALRLEPQNEDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDAKGREKRA 240
           VEFALRLEPQ E+LKKQR EVKSLLEKAILAKAAGAAT+AAP V+EV+ KVDA G +  A
Sbjct: 181 VEFALRLEPQTEELKKQRTEVKSLLEKAILAKAAGAATRAAPSVREVENKVDANGHDNSA 240

Query: 241 LSAPERSKKLGIDVLPDNIQLISLYDQQLNKTVDSGDTMIKSKTNGDRNRQKVNGLHEIA 300
            S PERSKK G+DVLPD IQL       +N++   G+  + S T  DRN++KVNG+ ++A
Sbjct: 241 FSFPERSKKAGVDVLPDKIQL------SVNRSSYPGEMAMNSNTAEDRNQKKVNGVKDVA 300

Query: 301 PGSSHLKNDKSENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSWRGFCGDRS 360
            GSS LKN+KS  ++L  SVQELASRAASRAR EAAKNI TPNSAYQFEV+WRGF GDRS
Sbjct: 301 QGSSLLKNNKSGEKELATSVQELASRAASRAREEAAKNICTPNSAYQFEVTWRGFGGDRS 360

Query: 361 LQTHLLKVTQPDTLPQIFKNALTAPLLIDIVKCIATFFIEETELAVKYLENLTKIPRFDM 420
           LQ HLLKVT P TLPQIFKNALTAPLLIDI+KCIA FFIE+T+LAV YLENLTKIPRFDM
Sbjct: 361 LQAHLLKVTPPVTLPQIFKNALTAPLLIDIIKCIAIFFIEDTKLAVDYLENLTKIPRFDM 420

Query: 421 IILCLSPDNKAVL 434
           +I+CL P +KA L
Sbjct: 421 VIMCLPPADKAEL 427

[Close]

BLAST of Spo12670.1 vs. NCBI nr
Match: gi|731327678|ref|XP_010674647.1| (PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 598.2 bits (1541), Expect = 1.200e-167
Identity = 325/433 (75.06%), Postives = 368/433 (84.99%), Query Frame = 1


		  
Query: 1   MSKQNLNFQGFLSDLQDWEHSLKDKDTKLENQNPQKGKLKLEVVSEDKRSDGKSNASYLS 60
           MS Q+LNF+GFL+DLQDWEHS+KDKD KL+NQ+  K K K+EVVSEDK+   K+ A+ LS
Sbjct: 1   MSNQSLNFEGFLNDLQDWEHSIKDKDKKLKNQDSHKSKSKVEVVSEDKQPVVKNTATSLS 60

Query: 61  SSTSQHRLSTNYDPLSQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCYSRSIAF 120
           +STSQHR   NYD LS MSSSL+ +ENTVDAASEKDLGNEYFKQ+KFNEAIDCYSRSIA 
Sbjct: 61  NSTSQHRPPMNYDRLSHMSSSLIADENTVDAASEKDLGNEYFKQRKFNEAIDCYSRSIAL 120

Query: 121 SPTAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIED 180
           SPTAVAYANRAMAYLKI+RFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRD++ED
Sbjct: 121 SPTAVAYANRAMAYLKIRRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDALED 180

Query: 181 VEFALRLEPQNEDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDAKGREKRA 240
           VEFALRLEPQ E+LKKQR EVKSLLEKAILAKAAGAAT+AAP V+EV+ KVDA G +  A
Sbjct: 181 VEFALRLEPQTEELKKQRTEVKSLLEKAILAKAAGAATRAAPSVREVENKVDANGHDNSA 240

Query: 241 LSAPERSKKLGIDVLPDNIQLISLYDQQLNKTVDSGDTMIKSKTNGDRNRQKVNGLHEIA 300
            S PERSKK G+DVLPD IQL       +N++   G+  + S T  DRN++KVNG+ ++A
Sbjct: 241 FSFPERSKKAGVDVLPDKIQL------SVNRSSYPGEMAMNSNTAEDRNQKKVNGVKDVA 300

Query: 301 PGSSHLKNDKSENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSWRGFCGDRS 360
            GSS L N+KS  ++L  SVQELASRAASRAR EAAKNI TPNSAYQFEV+WRGF GDRS
Sbjct: 301 QGSS-LLNNKSGEKELATSVQELASRAASRAREEAAKNICTPNSAYQFEVTWRGFGGDRS 360

Query: 361 LQTHLLKVTQPDTLPQIFKNALTAPLLIDIVKCIATFFIEETELAVKYLENLTKIPRFDM 420
           LQ HLLKVT P TLPQIFKNALTAPLLIDI+KCIA FFIE+T+LAV YLENLTKIPRFDM
Sbjct: 361 LQAHLLKVTPPVTLPQIFKNALTAPLLIDIIKCIAIFFIEDTKLAVDYLENLTKIPRFDM 420

Query: 421 IILCLSPDNKAVL 434
           +I+CL P +KA L
Sbjct: 421 VIMCLPPADKAEL 426

[Close]

BLAST of Spo12670.1 vs. NCBI nr
Match: gi|731327680|ref|XP_010674648.1| (PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 552.4 bits (1422), Expect = 7.600e-154
Identity = 300/399 (75.19%), Postives = 339/399 (84.96%), Query Frame = 1


		  
Query: 1   MSKQNLNFQGFLSDLQDWEHSLKDKDTKLENQNPQKGKLKLEVVSEDKRSDGKSNASYLS 60
           MS Q+LNF+GFL+DLQDWEHS+KDKD KL+NQ+  K K K+EVVSEDK+   K+ A+ LS
Sbjct: 1   MSNQSLNFEGFLNDLQDWEHSIKDKDKKLKNQDSHKSKSKVEVVSEDKQPVVKNTATSLS 60

Query: 61  SSTSQHRLSTNYDPLSQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCYSRSIAF 120
           +STSQHR   NYD LS MSSSL+ +ENTVDAASEKDLGNEYFKQ+KFNEAIDCYSRSIA 
Sbjct: 61  NSTSQHRPPMNYDRLSHMSSSLIADENTVDAASEKDLGNEYFKQRKFNEAIDCYSRSIAL 120

Query: 121 SPTAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIED 180
           SPTAVAYANRAMAYLKI+RFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRD++ED
Sbjct: 121 SPTAVAYANRAMAYLKIRRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDALED 180

Query: 181 VEFALRLEPQNEDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDAKGREKRA 240
           VEFALRLEPQ E+LKKQR EVKSLLEKAILAKAAGAAT+AAP V+EV+ KVDA G +  A
Sbjct: 181 VEFALRLEPQTEELKKQRTEVKSLLEKAILAKAAGAATRAAPSVREVENKVDANGHDNSA 240

Query: 241 LSAPERSKKLGIDVLPDNIQLISLYDQQLNKTVDSGDTMIKSKTNGDRNRQKVNGLHEIA 300
            S PERSKK G+DVLPD IQL       +N++   G+  + S T  DRN++KVNG+ ++A
Sbjct: 241 FSFPERSKKAGVDVLPDKIQL------SVNRSSYPGEMAMNSNTAEDRNQKKVNGVKDVA 300

Query: 301 PGSSHLKNDKSENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSWRGFCGDRS 360
            GSS LKN+KS  ++L  SVQELASRAASRAR EAAKNI TPNSAYQFEV+WRGF GDRS
Sbjct: 301 QGSSLLKNNKSGEKELATSVQELASRAASRAREEAAKNICTPNSAYQFEVTWRGFGGDRS 360

Query: 361 LQTHLLKVTQPDTLPQIFKNALTAPLLIDIVKCIATFFI 400
           LQ HLLKVT P TLPQIFKNALTAPLLIDI+KCIA FF+
Sbjct: 361 LQAHLLKVTPPVTLPQIFKNALTAPLLIDIIKCIAIFFM 393

[Close]

BLAST of Spo12670.1 vs. NCBI nr
Match: gi|902189928|gb|KNA11502.1| (hypothetical protein SOVF_134660 [Spinacia oleracea])

HSP 1 Score: 546.6 bits (1407), Expect = 4.200e-152
Identity = 293/302 (97.02%), Postives = 293/302 (97.02%), Query Frame = 1


		  
Query: 132 MAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVEFALRLEPQN 191
           MAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVEFALRLEPQN
Sbjct: 1   MAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVEFALRLEPQN 60

Query: 192 EDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDAKGREKRALSAPERSKKLG 251
           EDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDAKGREKRALSAPERSKKLG
Sbjct: 61  EDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDAKGREKRALSAPERSKKLG 120

Query: 252 IDVLPDNIQLISLYDQQLNKTVDSGDTMIKSKTNGDRNRQKVNGLHEIAPGSSHLKNDKS 311
           IDVLPDNIQL        NKTVDSGDTMIKSKTNGDRNRQKVNGLHEIAPGSSHLKNDKS
Sbjct: 121 IDVLPDNIQL--------NKTVDSGDTMIKSKTNGDRNRQKVNGLHEIAPGSSHLKNDKS 180

Query: 312 ENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSWRGFCGDRSLQTHLLKVTQP 371
           ENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSWRGFCGDRSLQTHLLKVTQP
Sbjct: 181 ENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSWRGFCGDRSLQTHLLKVTQP 240

Query: 372 DTLPQIFKNALTAPLLIDIVKCIATFFIEETELAVKYLENLTKIPRFDMIILCLSPDNKA 431
           DTLPQIFKNALTAPLLIDIVKCIATFFIEETELAVKYLENLTKIPRFDMIILCLSPDNKA
Sbjct: 241 DTLPQIFKNALTAPLLIDIVKCIATFFIEETELAVKYLENLTKIPRFDMIILCLSPDNKA 294

Query: 432 VL 434
            L
Sbjct: 301 EL 294

[Close]

BLAST of Spo12670.1 vs. NCBI nr
Match: gi|590644717|ref|XP_007031158.1| (Tetratricopeptide repeat-like superfamily protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 422.2 bits (1084), Expect = 1.200e-114
Identity = 248/439 (56.49%), Postives = 311/439 (70.84%), Query Frame = 1


		  
Query: 4   QNLNFQGFLSDLQDWEHSLKDKDTKLENQNPQKGKLKLEVVSEDKRSDGKSNASYLSSST 63
           Q L+FQGFL++LQDWE SLK+KD  +++Q   K +L     +E  R  GKS+    S+++
Sbjct: 9   QALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQL----TNEKGRPTGKSSLIDSSTTS 68

Query: 64  S-QHRLSTNYDPLSQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCYSRSIAFSP 123
           S Q+    NYD  + +SSS +T EN  DAASEK+LGNEYFKQKKF EAIDCYSRSI  SP
Sbjct: 69  SRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRSIGLSP 128

Query: 124 TAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVE 183
           TAVA+ANRAMAYLKIK+FQEAE+DCTEALNLDDRYIKAYSRRATARKEL KL++SIED E
Sbjct: 129 TAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDTE 188

Query: 184 FALRLEPQNEDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDAKGREKRALS 243
           FALRLEP N+++KKQ AE KSL EK IL KA+G   K+    +EV  K + K       S
Sbjct: 189 FALRLEPNNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEAQEVG-KSETKENGLGMHS 248

Query: 244 APERSKKLGIDVLPDNIQLISLYDQQ--------LNKTVDSGDTMIKSKTNGDRNRQKVN 303
           A   +++ G+  +      +S YD+Q         ++ +   +T+  S+ +G +    + 
Sbjct: 249 ASNSTQRTGVATVQGYQTKVSEYDKQKKPEKGSVTSEGIGDRNTLAGSRKDGTQLDSGIV 308

Query: 304 GLHEIAPGSSHLKNDKSENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSWRG 363
           GL  I       KN+++   +L  SVQELAS AA+RA AEAAKNIS PN+AYQFEVSWR 
Sbjct: 309 GLESIK------KNNRTRKPELKASVQELASLAATRAMAEAAKNISPPNTAYQFEVSWRA 368

Query: 364 FCGDRSLQTHLLKVTQPDTLPQIFKNALTAPLLIDIVKCIATFFIEETELAVKYLENLTK 423
             GDR+LQ HLLKVT P  LPQIFKNAL+A +L+DI+KC+ATFF EE +LA+KYLENLTK
Sbjct: 369 LSGDRALQAHLLKVTSPSALPQIFKNALSASMLVDIIKCVATFFREEVDLAIKYLENLTK 428

Query: 424 IPRFDMIILCLSPDNKAVL 434
           +PRFDM+I+CLS   KA L
Sbjct: 429 VPRFDMLIMCLSSTEKADL 436

[Close]

BLAST of Spo12670.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CIY9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g080490 PE=4 SV=1)

HSP 1 Score: 604.0 bits (1556), Expect = 1.500e-169
Identity = 326/433 (75.29%), Postives = 369/433 (85.22%), Query Frame = 1


		  
Query: 1   MSKQNLNFQGFLSDLQDWEHSLKDKDTKLENQNPQKGKLKLEVVSEDKRSDGKSNASYLS 60
           MS Q+LNF+GFL+DLQDWEHS+KDKD KL+NQ+  K K K+EVVSEDK+   K+ A+ LS
Sbjct: 1   MSNQSLNFEGFLNDLQDWEHSIKDKDKKLKNQDSHKSKSKVEVVSEDKQPVVKNTATSLS 60

Query: 61  SSTSQHRLSTNYDPLSQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCYSRSIAF 120
           +STSQHR   NYD LS MSSSL+ +ENTVDAASEKDLGNEYFKQ+KFNEAIDCYSRSIA 
Sbjct: 61  NSTSQHRPPMNYDRLSHMSSSLIADENTVDAASEKDLGNEYFKQRKFNEAIDCYSRSIAL 120

Query: 121 SPTAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIED 180
           SPTAVAYANRAMAYLKI+RFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRD++ED
Sbjct: 121 SPTAVAYANRAMAYLKIRRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDALED 180

Query: 181 VEFALRLEPQNEDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDAKGREKRA 240
           VEFALRLEPQ E+LKKQR EVKSLLEKAILAKAAGAAT+AAP V+EV+ KVDA G +  A
Sbjct: 181 VEFALRLEPQTEELKKQRTEVKSLLEKAILAKAAGAATRAAPSVREVENKVDANGHDNSA 240

Query: 241 LSAPERSKKLGIDVLPDNIQLISLYDQQLNKTVDSGDTMIKSKTNGDRNRQKVNGLHEIA 300
            S PERSKK G+DVLPD IQL       +N++   G+  + S T  DRN++KVNG+ ++A
Sbjct: 241 FSFPERSKKAGVDVLPDKIQL------SVNRSSYPGEMAMNSNTAEDRNQKKVNGVKDVA 300

Query: 301 PGSSHLKNDKSENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSWRGFCGDRS 360
            GSS LKN+KS  ++L  SVQELASRAASRAR EAAKNI TPNSAYQFEV+WRGF GDRS
Sbjct: 301 QGSSLLKNNKSGEKELATSVQELASRAASRAREEAAKNICTPNSAYQFEVTWRGFGGDRS 360

Query: 361 LQTHLLKVTQPDTLPQIFKNALTAPLLIDIVKCIATFFIEETELAVKYLENLTKIPRFDM 420
           LQ HLLKVT P TLPQIFKNALTAPLLIDI+KCIA FFIE+T+LAV YLENLTKIPRFDM
Sbjct: 361 LQAHLLKVTPPVTLPQIFKNALTAPLLIDIIKCIAIFFIEDTKLAVDYLENLTKIPRFDM 420

Query: 421 IILCLSPDNKAVL 434
           +I+CL P +KA L
Sbjct: 421 VIMCLPPADKAEL 427

[Close]

BLAST of Spo12670.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QW45_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_134660 PE=4 SV=1)

HSP 1 Score: 546.6 bits (1407), Expect = 2.900e-152
Identity = 293/302 (97.02%), Postives = 293/302 (97.02%), Query Frame = 1


		  
Query: 132 MAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVEFALRLEPQN 191
           MAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVEFALRLEPQN
Sbjct: 1   MAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVEFALRLEPQN 60

Query: 192 EDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDAKGREKRALSAPERSKKLG 251
           EDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDAKGREKRALSAPERSKKLG
Sbjct: 61  EDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDAKGREKRALSAPERSKKLG 120

Query: 252 IDVLPDNIQLISLYDQQLNKTVDSGDTMIKSKTNGDRNRQKVNGLHEIAPGSSHLKNDKS 311
           IDVLPDNIQL        NKTVDSGDTMIKSKTNGDRNRQKVNGLHEIAPGSSHLKNDKS
Sbjct: 121 IDVLPDNIQL--------NKTVDSGDTMIKSKTNGDRNRQKVNGLHEIAPGSSHLKNDKS 180

Query: 312 ENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSWRGFCGDRSLQTHLLKVTQP 371
           ENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSWRGFCGDRSLQTHLLKVTQP
Sbjct: 181 ENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSWRGFCGDRSLQTHLLKVTQP 240

Query: 372 DTLPQIFKNALTAPLLIDIVKCIATFFIEETELAVKYLENLTKIPRFDMIILCLSPDNKA 431
           DTLPQIFKNALTAPLLIDIVKCIATFFIEETELAVKYLENLTKIPRFDMIILCLSPDNKA
Sbjct: 241 DTLPQIFKNALTAPLLIDIVKCIATFFIEETELAVKYLENLTKIPRFDMIILCLSPDNKA 294

Query: 432 VL 434
            L
Sbjct: 301 EL 294

[Close]

BLAST of Spo12670.1 vs. UniProtKB/TrEMBL
Match: A0A061F300_THECC (Tetratricopeptide repeat-like superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_026769 PE=4 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 8.300e-115
Identity = 248/439 (56.49%), Postives = 311/439 (70.84%), Query Frame = 1


		  
Query: 4   QNLNFQGFLSDLQDWEHSLKDKDTKLENQNPQKGKLKLEVVSEDKRSDGKSNASYLSSST 63
           Q L+FQGFL++LQDWE SLK+KD  +++Q   K +L     +E  R  GKS+    S+++
Sbjct: 9   QALDFQGFLNNLQDWELSLKEKDKIMKSQASDKEQL----TNEKGRPTGKSSLIDSSTTS 68

Query: 64  S-QHRLSTNYDPLSQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCYSRSIAFSP 123
           S Q+    NYD  + +SSS +T EN  DAASEK+LGNEYFKQKKF EAIDCYSRSI  SP
Sbjct: 69  SRQYDYLQNYDKFNSLSSSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRSIGLSP 128

Query: 124 TAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVE 183
           TAVA+ANRAMAYLKIK+FQEAE+DCTEALNLDDRYIKAYSRRATARKEL KL++SIED E
Sbjct: 129 TAVAHANRAMAYLKIKKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDTE 188

Query: 184 FALRLEPQNEDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDAKGREKRALS 243
           FALRLEP N+++KKQ AE KSL EK IL KA+G   K+    +EV  K + K       S
Sbjct: 189 FALRLEPNNQEIKKQHAEFKSLYEKEILQKASGVLRKSMQEAQEVG-KSETKENGLGMHS 248

Query: 244 APERSKKLGIDVLPDNIQLISLYDQQ--------LNKTVDSGDTMIKSKTNGDRNRQKVN 303
           A   +++ G+  +      +S YD+Q         ++ +   +T+  S+ +G +    + 
Sbjct: 249 ASNSTQRTGVATVQGYQTKVSEYDKQKKPEKGSVTSEGIGDRNTLAGSRKDGTQLDSGIV 308

Query: 304 GLHEIAPGSSHLKNDKSENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSWRG 363
           GL  I       KN+++   +L  SVQELAS AA+RA AEAAKNIS PN+AYQFEVSWR 
Sbjct: 309 GLESIK------KNNRTRKPELKASVQELASLAATRAMAEAAKNISPPNTAYQFEVSWRA 368

Query: 364 FCGDRSLQTHLLKVTQPDTLPQIFKNALTAPLLIDIVKCIATFFIEETELAVKYLENLTK 423
             GDR+LQ HLLKVT P  LPQIFKNAL+A +L+DI+KC+ATFF EE +LA+KYLENLTK
Sbjct: 369 LSGDRALQAHLLKVTSPSALPQIFKNALSASMLVDIIKCVATFFREEVDLAIKYLENLTK 428

Query: 424 IPRFDMIILCLSPDNKAVL 434
           +PRFDM+I+CLS   KA L
Sbjct: 429 VPRFDMLIMCLSSTEKADL 436

[Close]

BLAST of Spo12670.1 vs. UniProtKB/TrEMBL
Match: A0A0D2PHE4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G306700 PE=4 SV=1)

HSP 1 Score: 414.5 bits (1064), Expect = 1.700e-112
Identity = 252/440 (57.27%), Postives = 311/440 (70.68%), Query Frame = 1


		  
Query: 4   QNLNFQGFLSDLQDWEHSLKDKDTKLENQNPQKGKLKLEVVSEDKRSDGKSNASYLSSST 63
           Q ++FQGFL+DLQDWE SLKDK    +  +   GK +L + +E  R  GK + +  SS+T
Sbjct: 9   QAMDFQGFLNDLQDWELSLKDKGKNKKMTSQASGKEQLNI-TEKGRPTGKRSLNNSSSTT 68

Query: 64  S--QHRLSTNYDPLSQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCYSRSIAFS 123
           S  Q+    NYD  S +S+S +T EN  DAASEK+LGNEYFKQKKF EAIDCYSRSIA S
Sbjct: 69  SSEQYDYLKNYDKRSNLSTSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRSIALS 128

Query: 124 PTAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDV 183
           PTAVAYANRAMAYLKI++FQEAE+DC+EALNLDDRYIKAYSRRATARKEL KL++SIED 
Sbjct: 129 PTAVAYANRAMAYLKIRKFQEAEDDCSEALNLDDRYIKAYSRRATARKELGKLKESIEDA 188

Query: 184 EFALRLEPQNEDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDA-KGREKRA 243
           EF LRLEP N+D+KKQ AE K+L EK IL KA+G   K+    +EV        G     
Sbjct: 189 EFGLRLEPNNQDMKKQHAEFKALYEKEILQKASGVIKKSMQGAQEVGKSATIDNGLGMHT 248

Query: 244 LSAPERSKKLGIDVLPDNIQLISLYDQQLNKTVDSGDTMIKSKTNGDRNRQKVNGLH--- 303
           +S  + +++ GI  +  +   +S  D+Q  K  + G   ++    G RN    N      
Sbjct: 249 MS--DSTQRKGIAAVQGSQTKVSECDKQ--KKPEKGSVTLEEI--GKRNTSAGNTADGTQ 308

Query: 304 ---EIAPGSSHLKND-KSENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSWR 363
              EIA G  ++K D KS  ++L  SVQ+LASRAASRA AEAAK+IS P++AYQFEVSWR
Sbjct: 309 LDAEIA-GPENIKRDTKSRKQELKASVQDLASRAASRAMAEAAKSISPPSTAYQFEVSWR 368

Query: 364 GFCGDRSLQTHLLKVTQPDTLPQIFKNALTAPLLIDIVKCIATFFIEETELAVKYLENLT 423
              GDRSLQ HLLKVT P  LPQIFKNA++A +L+DIVKC+ATFF E+ +LA+KYLENLT
Sbjct: 369 ALSGDRSLQAHLLKVTSPSALPQIFKNAMSASMLVDIVKCVATFFREDVDLAIKYLENLT 428

Query: 424 KIPRFDMIILCLSPDNKAVL 434
           K+PRFDM+IL LSP +KA L
Sbjct: 429 KVPRFDMLILFLSPTDKADL 440

[Close]

BLAST of Spo12670.1 vs. UniProtKB/TrEMBL
Match: A0A0B0PNZ3_GOSAR (RNA polymerase II-associated 3 OS=Gossypium arboreum GN=F383_05117 PE=4 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 3.800e-112
Identity = 245/438 (55.94%), Postives = 306/438 (69.86%), Query Frame = 1


		  
Query: 4   QNLNFQGFLSDLQDWEHSLKDKDTKLENQNPQKGKLKLEVVSEDKRSDGKS-NASYLSSS 63
           Q ++FQGFL+DLQDWE SLKDK    +  +   GK +L +  + + +  +S N+S  ++S
Sbjct: 9   QAMDFQGFLNDLQDWELSLKDKGKNKKMTSQASGKEQLNITEKGRPTGKRSLNSSSSTTS 68

Query: 64  TSQHRLSTNYDPLSQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCYSRSIAFSP 123
           + Q+    NYD  S +S+S +T EN  DAASEK+LGNEYFKQKKF EAIDCYSRSIA SP
Sbjct: 69  SEQYDYLKNYDKWSNLSTSFVTEENMPDAASEKELGNEYFKQKKFKEAIDCYSRSIALSP 128

Query: 124 TAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVE 183
           TAVAYANRAMAYLKI++FQEAE+DCTEALNLDDRYIKAYSRRATARKEL KL++SIED E
Sbjct: 129 TAVAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDAE 188

Query: 184 FALRLEPQNEDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDA-KGREKRAL 243
           F LRLEP ++D+KKQ AE K+L EK IL KA+G   K+    +EV        G     +
Sbjct: 189 FGLRLEPNSQDMKKQHAEFKALYEKEILQKASGVIKKSMQGAQEVGKSATIDNGLGMHTM 248

Query: 244 SAPERSKKLGIDVLPDNIQLISLYDQQLNKTVDSGDTMIKSKTNGDRNRQKVNGLH---- 303
           S  + +++ GI     +   +S  D+Q  K  + G   ++    G RN    N       
Sbjct: 249 S--DSTQRKGIAAAQGSQTKVSEIDKQ--KKPEKGSVTLEE--IGKRNTSAGNTADGTQL 308

Query: 304 --EIAPGSSHLKNDKSENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSWRGF 363
             EIA   +  +N K+  ++L  SVQ+LA RAASRA AEAAKNIS PN+AYQFEVSWR  
Sbjct: 309 DVEIAGPENIKRNTKTRKQELKASVQDLAFRAASRAMAEAAKNISPPNTAYQFEVSWRAL 368

Query: 364 CGDRSLQTHLLKVTQPDTLPQIFKNALTAPLLIDIVKCIATFFIEETELAVKYLENLTKI 423
            GDR LQ HLLKVT P  LPQIFKNA++A +L+DIVKC+ATFF E+ +LA+KYLENLTK+
Sbjct: 369 SGDRLLQAHLLKVTSPSALPQIFKNAMSASMLVDIVKCVATFFREDVDLAIKYLENLTKV 428

Query: 424 PRFDMIILCLSPDNKAVL 434
           PRFDM+IL LSP +KA L
Sbjct: 429 PRFDMLILFLSPTDKADL 440

[Close]

BLAST of Spo12670.1 vs. ExPASy Swiss-Prot
Match: RPAP3_RAT (RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.000e-30
Identity = 109/354 (30.79%), Postives = 180/354 (50.85%), Query Frame = 1


		  
Query: 91  AASEKDLGNEYFKQKKFNEAIDCYSRSIAFSPT-AVAYANRAMAYLKIKRFQEAENDCTE 150
           A +EKDLGN +FK+ K+ +AI+CY+R IA   T A+  ANRAMAYLK+++++EAE DCT+
Sbjct: 282 AIAEKDLGNGFFKEGKYEQAIECYTRGIAADSTNALLPANRAMAYLKVQKYEEAERDCTQ 341

Query: 151 ALNLDDRYIKAYSRRATARKELRKLRDSIEDVEFALRLEPQNEDLKKQRAEV-KSLLEKA 210
           A+ LD  Y KA++RR TAR  L K+ ++ +D E  L LEP N+    + + + K L+EK 
Sbjct: 342 AILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRIKKELIEKG 401

Query: 211 ILAKAAGAATKAAPVVKEVDTK------------VDAKGREKRALSAPERSKKLGIDVLP 270
                   +T+   VVK VD+             ++  G    ++ APE S       +P
Sbjct: 402 RWDDVFLDSTQRHNVVKPVDSPHRGSPKALKKVFIEETGNLIESVDAPESSA-----TVP 461

Query: 271 DNIQLISLYDQQLNKTVDSGDTMIKSKTNGDRNRQKVNGLHEIAPGSSHLKNDKSENRDL 330
           ++ +     D    K    GD    S ++G+  R KV  + E    SS  +      + +
Sbjct: 462 ESDRAAVAVDTGRKKDFSQGD----SVSSGETPRAKVLKI-EAVGDSSAPQAQVDVKQGV 521

Query: 331 GLSVQELASRAASRARAEAAKNI--STPNSAYQFEVSWRGFCGDRSLQTHLLKVTQPDTL 390
             SV E  S   ++   + A  +    P +++Q E  +R       +    +K  +P   
Sbjct: 522 RQSVSEKTSVRVAQTPGQLAAVVLPPVPANSFQLESDFRQLRSSPEMLYQYVKKIEPSLY 581

Query: 391 PQIFKNALTAPLLIDIVKCIATFFIEETE--LAVKYLENLTKIPRFDMIILCLS 427
           P++F+  L   +   I+K +  F++E  +  L  + LE L+++ RFDM ++ +S
Sbjct: 582 PKLFQKNLDPDVFNQIIKILHDFYVEREKPALIFEVLERLSQLRRFDMAVMFMS 625

[Close]

BLAST of Spo12670.1 vs. ExPASy Swiss-Prot
Match: RPAP3_HUMAN (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 4.500e-29
Identity = 128/441 (29.02%), Postives = 209/441 (47.39%), Query Frame = 1


		  
Query: 15  LQDWEHSLKDKDTKLENQ-NPQKGKLKLEVVSE---DKRSDGKSNASYLSSSTSQHRLST 74
           LQ  E + KD +  LE + N  +   +L  +S+    K +     A  +  ST   R   
Sbjct: 214 LQKLEEAKKDYERVLELEPNNFEATNELRKISQALASKENSYPKEADIVIKSTEGER--- 273

Query: 75  NYDPLSQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCYSRSIAFS-PTAVAYAN 134
                      +   +N   A SEKD GN +FK+ K+  AI+CY+R IA     A+  AN
Sbjct: 274 ---------KQIEAQQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPAN 333

Query: 135 RAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVEFALRLEP 194
           RAMAYLKI++++EAE DCT+A+ LD  Y KA++RR TAR  L KL ++ +D E  L LEP
Sbjct: 334 RAMAYLKIQKYEEAEKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEP 393

Query: 195 QNEDLKKQRAEV-KSLLEKAILAKAAGAATKAAPVVKEVD-------TK------VDAKG 254
            N+    + +++ K L+EK         +T+   VVK +D       TK      ++  G
Sbjct: 394 GNKQAVTELSKIKKELIEKGHWDDVFLDSTQRQNVVKPIDNPPHPGSTKPLKKVIIEETG 453

Query: 255 REKRALSAPERSKKLGIDVLPDNIQLISLYDQQLNKTVDSGDTMIKSKTNGDRNRQKVNG 314
              + +  P+ +     +  P N+  +       +K   S D +  +    D  R KV  
Sbjct: 454 NLIQTIDVPDSTTAAAPENNPINLANVIAATGTTSKKNSSQDDLFPT---SDTPRAKVLK 513

Query: 315 LHEIAPGSSHLKNDKSENRDLGLSVQELASRAASRARAEAAKNI--STPNSAYQFEVSWR 374
           + E++  SS L+   S  +D+  S  E       +  A+ A  +    P +++Q E  +R
Sbjct: 514 IEEVSDTSS-LQPQASLKQDVCQSYSEKMPIEIEQKPAQFATTVLPPIPANSFQLESDFR 573

Query: 375 GFCGDRSLQTHLLKVTQPDTLPQIFKNALTAPLLIDIVKCIATFFIEETE--LAVKYLEN 433
                  +    LK  +P   P++F+  L   +   IVK +  F+IE+ +  L  + L+ 
Sbjct: 574 QLKSSPDMLYQYLKQIEPSLYPKLFQKNLDPDVFNQIVKILHDFYIEKEKPLLIFEILQR 633

[Close]

BLAST of Spo12670.1 vs. ExPASy Swiss-Prot
Match: RPAP3_MOUSE (RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.400e-27
Identity = 125/427 (29.27%), Postives = 207/427 (48.48%), Query Frame = 1


		  
Query: 15  LQDWEHSLKDKDTKLENQNPQKGKLKLEVVSEDKRSDGKSNASYLSSSTSQHRLSTNYDP 74
           LQ  E + KD +  LE + P   +   E+   ++    K N+   +++ ++ +      P
Sbjct: 215 LQKLEDARKDYEKVLELE-PDNFEATNELRKINQALTSKENSGPGAAAAAESK------P 274

Query: 75  LSQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCYSRSIAFSPT-AVAYANRAMA 134
            +  S      +    A +EKDLGN +FK+ K+ +AI+CY+R IA   T A+  ANRAMA
Sbjct: 275 AAGESKPTGGQQGRQKAIAEKDLGNGFFKEGKYEQAIECYTRGIAADRTNALLPANRAMA 334

Query: 135 YLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVEFALRLEPQNED 194
           YLKI+R++EAE DCT+A+ LD  Y KA++RR TAR  L K+ ++ +D E  L LEP N+ 
Sbjct: 335 YLKIQRYEEAERDCTQAIVLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQ 394

Query: 195 LKKQRAEV-KSLLEKAILAKAAGAATKAAPVVKEVDTKVDAKGREKRALSAPERSKKLGI 254
              + + + K L+EK         +T+   VVK VD       +  + +   E    +  
Sbjct: 395 AATELSRIKKELIEKGHWDDVFLDSTQRHHVVKAVDNPPRGSPKALKKVFIEETGNLIET 454

Query: 255 DVLPDNIQLISLYDQQLNKTVDSGDTMIKSK----TNGDRNRQKVNGLHEIAPGSSHLKN 314
              PD+   +   D +    V +G     S+      GDR R KV  +  ++  S+  + 
Sbjct: 455 VDAPDSSATVPESD-RATAAVGTGTKKNPSEGVSLPAGDRPRAKVLKIEAVSDTSAP-QA 514

Query: 315 DKSENRDLGLSVQELASRAASR--ARAEAAKNISTPNSAYQFEVSWRGFCGDRSLQTHLL 374
                +D      E AS  A +   +  AA     P +++Q E  +R       +    +
Sbjct: 515 QVGVKQDARQPGSEKASVRAEQMPGQLAAAGLPPVPANSFQLESDFRQLRSSPEMLYQYV 574

Query: 375 KVTQPDTLPQIFKNALTAPLLIDIVKCIATFFIEETE--LAVKYLENLTKIPRFDMIILC 431
           K  +P   P++F+  L   +   I+K +  F+IE  +  L  + LE L+++ RFDM ++ 
Sbjct: 575 KNIEPSLYPKLFQKNLDPDVFNQIIKILHDFYIEREKPALIFEVLERLSQLRRFDMAVMF 632

[Close]

BLAST of Spo12670.1 vs. ExPASy Swiss-Prot
Match: RPAP3_CHICK (RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.500e-27
Identity = 124/442 (28.05%), Postives = 211/442 (47.74%), Query Frame = 1


		  
Query: 7   NFQGFLSDLQDWEHSLKDKDTKLENQNPQKGKLKLEVVSEDKRSDGKS-NASYLSSSTSQ 66
           NFQG     +D+E  L+      E +N  K   K+E     + S+ K    +  S  T  
Sbjct: 216 NFQGAK---EDYEKVLELDANNYEAKNELK---KIEQALSSESSEQKEFEEAVRSELTEN 275

Query: 67  HRLSTNYDPLSQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCYSRSIAFSPT-A 126
            R     + L Q             A +EKDLGN YFK+ K+  AI+CY+R IA   T A
Sbjct: 276 ERRCIEEEQLKQK------------AVTEKDLGNGYFKEGKYEAAIECYTRGIAADGTNA 335

Query: 127 VAYANRAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVEFA 186
           +  ANRAMAYLKI++++EAENDCT+AL LD  Y KA++RR  AR  L KL+++++D E  
Sbjct: 336 LLPANRAMAYLKIQKYEEAENDCTQALLLDASYSKAFARRGAARVALGKLKEAMQDFEAV 395

Query: 187 LRLEPQNEDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDAK-GREKRALSA 246
           L+LEP N+    +  ++++ L +    + +      A ++KE + K   K       L +
Sbjct: 396 LKLEPGNKQAINELTKIRNELAEK---EQSCHEEYPAVLIKESEIKNIVKLTHNPLNLKS 455

Query: 247 PERSKKLGIDVLPDNI---------QLISLYDQQLNKTVDSGDTMIKSKTNGDRNRQKVN 306
            +  +++ ++ + D++          L++ +   +N             T+ D  + K  
Sbjct: 456 TKPLRRIAVEEVDDDVLNSDFSSSTSLVNNWKNSVNIETTENLDQDDQLTSMDIPKAKQL 515

Query: 307 GLHEIAPGSSHL--KNDKSENRDLGLSVQELASRAASRARAEAAKNISTPNSAYQFEVSW 366
            + EI   SS       K  +  L  S+ +   R    +   A+   + P +++Q E  +
Sbjct: 516 KIEEITDVSSPQLPAGAKGVSSVLHPSMNKQIERENKASFRSASPVPAIPANSFQLESDF 575

Query: 367 RGFCGDRSLQTHLLKVTQPDTLPQIFKNALTAPLLIDIVKCIATFFIEETE--LAVKYLE 426
           R            LK  +P   P++F+ +L   L   I++ +  F+IE+ E  L ++ L+
Sbjct: 576 RKLKDCPEKMYLYLKQIEPSIYPKLFQKSLDPDLFNQILRILHDFYIEKEEPSLILEILQ 635

Query: 427 NLTKIPRFDMIILCLSPDNKAV 433
            L+++ RFDM ++ +S   K +
Sbjct: 636 RLSELKRFDMAVMFMSGSEKKI 636

[Close]

BLAST of Spo12670.1 vs. ExPASy Swiss-Prot
Match: RPAP3_XENLA (RNA polymerase II-associated protein 3 OS=Xenopus laevis GN=rpap3 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 8.200e-23
Identity = 108/407 (26.54%), Postives = 195/407 (47.91%), Query Frame = 1


		  
Query: 58  YLSSSTSQHRLSTNYDPL---SQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCY 117
           Y S+S  Q  ++T         +    +   +    A  +KDLGN YFK+ K+  AI+CY
Sbjct: 248 YSSASDVQENMATEAKITVENEEEKKQIEIQQRKQQAIMQKDLGNAYFKEGKYEIAIECY 307

Query: 118 SRSI-AFSPTAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRK 177
           S+ + A +  A+  ANRAMAYLKI++++EAE DCT A++LD  Y KA++RR TA   L K
Sbjct: 308 SQGMEADNTNALLPANRAMAYLKIQKYKEAEADCTLAISLDASYCKAFARRGTASIMLGK 367

Query: 178 LRDSIEDVEFALRLEPQNEDLKKQRAEVKSLLEKAILAKAAGAATKAAPVVKEVDTKVDA 237
            +++ ED E  L+L+P N+    + A++   L      +     +    ++  V+     
Sbjct: 368 QKEAKEDFEMVLKLDPGNKQAVLELAKISQELRSIEKDRNGNKDSNQRKLINTVE----- 427

Query: 238 KGREKRALSAPERSKKLGIDVLPDNIQLISLYDQQLN-KTVDSGDTMIKSKT---NGDRN 297
              +   L + +  +++ I+ +    ++ +   ++ N +  DS D   ++ T   N ++N
Sbjct: 428 ---KLPHLRSTKPLRRMVIEEVGGPAEIFNTSLKETNHRKADSVDLTAETNTQDLNQEQN 487

Query: 298 --------RQKVNGLHEIA--PGSSH--LKNDKSENRDLGLSVQELASRAASRARAEAAK 357
                     K+  + EI+  PGS       D   +R     ++++ S  +         
Sbjct: 488 ICNSPDVPSPKIPKIEEISDTPGSCEPTTGEDYLTSRPSPPKIEKVVSTFSESLNIGIP- 547

Query: 358 NISTPNSAYQFEVSWRGFCGDRSLQTHLLKVTQPDTLPQIFKNALTAPLLIDIVKCIATF 417
             + P +++Q E  +R   G+  L    LK  +P    ++FK AL   L  DI+  +   
Sbjct: 548 --AVPTNSFQLESDFRRLKGNPDLLYVYLKQIEPTLYGKLFKKALDPDLFSDILTILREQ 607

Query: 418 FI--EETELAVKYLENLTKIPRFDMIILCLSPDNKAVLSFHVAFQEI 443
           FI  +  +L  + L+ L+++ RFDM ++ LS  +K   + H+ F  +
Sbjct: 608 FINKDSPDLIFEILQRLSELKRFDMAVMFLSESDKN--NAHILFSHL 641

[Close]

BLAST of Spo12670.1 vs. TAIR (Arabidopsis)
Match: AT1G56440.2 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 359.4 bits (921), Expect = 3.300e-99
Identity = 224/468 (47.86%), Postives = 294/468 (62.82%), Query Frame = 1


		  
Query: 4   QNLNFQGFLSDLQDWEHSLKDKDTKLENQNPQKGKLKLEVVSEDKRSDGKSNASYLSSST 63
           Q  +FQGF +DLQDWE SLKDKD K++ Q                 S   S+ ++  S +
Sbjct: 12  QTQDFQGFFNDLQDWELSLKDKDKKIKQQ--------------PANSSNPSSETFRPSGS 71

Query: 64  SQHRLSTNYDPLSQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCYSRSIAFSPT 123
            ++  +  Y  +  +SSSL+  E+ +D++SEK+ GNE+FKQKKFNEAIDCYSRSIA SP 
Sbjct: 72  GKYDFAKKYRSIRDLSSSLI-GESLLDSSSEKEQGNEFFKQKKFNEAIDCYSRSIALSPN 131

Query: 124 AVAYANRAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVEF 183
           AV YANRAMAYLKIKR++EAE DCTEALNLDDRYIKAYSRRATARKEL  ++++ ED EF
Sbjct: 132 AVTYANRAMAYLKIKRYREAEVDCTEALNLDDRYIKAYSRRATARKELGMIKEAKEDAEF 191

Query: 184 ALRLEPQNEDLKKQRAEVKSLLEKAILAKAAGAATKAA---------------PVVKEVD 243
           ALRLEP++++LKKQ A++KSLLEK I+ KA GA    A               P  +   
Sbjct: 192 ALRLEPESQELKKQYADIKSLLEKEIIEKATGAMQSTAQELLKTSGLDKKIQKPKTEMTS 251

Query: 244 TKVDAKGREKRALSAP------ERSKKLGIDVLPDNI----QLISLY-DQQLNKTVDSGD 303
             V    +  R +  P         KKL  ++ P++     +LISLY    L +    G 
Sbjct: 252 KPVTLVAKTNRDIVQPVLGSNESSGKKLIENIQPEHRWNFRELISLYLSCYLQEKSKEGS 311

Query: 304 TMI---------KSKTNGDRNRQKV------NGLHEIAPGSSHLKNDKSENRDLGLSVQE 363
             I         K  T G ++ +K       NG     P     +N  S+  +L  SVQE
Sbjct: 312 MKIPAITEILDSKKVTPGSQSYEKEAKPSDRNGTQPSGP-----ENQVSKQLELKPSVQE 371

Query: 364 LASRAASRARAEAAKNISTPNSAYQFEVSWRGFCGDRSLQTHLLKVTQPDTLPQIFKNAL 423
           LA+ AAS A  EA+KNI TP SAY+FE SWR F GD +L++ LLKVT P +LPQIFKNAL
Sbjct: 372 LAAHAASLAMTEASKNIKTPKSAYEFENSWRSFSGDSALRSQLLKVTTPSSLPQIFKNAL 431

Query: 424 TAPLLIDIVKCIATFFIEETELAVKYLENLTKIPRFDMIILCLSPDNK 431
           T+P+L+DI+KC+A+FF E+ +LAVKY+ENLTK+PRF+M+++CL+   K
Sbjct: 432 TSPVLVDIIKCVASFFTEDMDLAVKYIENLTKVPRFNMLVMCLTSTEK 459

[Close]

BLAST of Spo12670.1 vs. TAIR (Arabidopsis)
Match: AT3G17970.1 (translocon at the outer membrane of chloroplasts 64-III)

HSP 1 Score: 90.1 bits (222), Expect = 3.800e-18
Identity = 55/121 (45.45%), Postives = 76/121 (62.81%), Query Frame = 1


		  
Query: 73  DPLSQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCYSRSIAFSPT-AVAYANRA 132
           DP S  S   +T E + + A EK  GN+ FK+K + +AI  YS +I  S   A  Y+NRA
Sbjct: 460 DPKS--SKKAITKEESAEIAKEK--GNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRA 519

Query: 133 MAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVEFALRLEPQN 192
            AYL++  F +AE DCT+A+ LD + +KAY RR TAR+ L   + +IED  +AL LEP N
Sbjct: 520 AAYLELGGFLQAEEDCTKAITLDKKNVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNN 576

[Close]

BLAST of Spo12670.1 vs. TAIR (Arabidopsis)
Match: AT5G09420.1 (translocon at the outer membrane of chloroplasts 64-V)

HSP 1 Score: 84.3 bits (207), Expect = 2.100e-16
Identity = 52/137 (37.96%), Postives = 83/137 (60.58%), Query Frame = 1


		  
Query: 60  SSSTSQHRLSTNYDPLSQMSSSLMTNENTVDAASEKDLGNEYFKQKKFNEAIDCYSRSIA 119
           +S   Q +L++N  P+S       TN N   +   K+ GN  +K K++N+A++ Y+ +I 
Sbjct: 463 ASLQDQAKLASNLAPVSD------TNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIK 522

Query: 120 FS-PTAVAYANRAMAYLKIKRFQEAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSI 179
            +   A  Y NRA A+L++  FQ+AE DCT+A+ +D + +KAY RR TAR+ L + +++ 
Sbjct: 523 LNGANATYYCNRAAAFLELCCFQQAEQDCTKAMLIDKKNVKAYLRRGTARESLVRYKEAA 582

Query: 180 EDVEFALRLEPQNEDLK 196
            D   AL LEPQN+  K
Sbjct: 583 ADFRHALVLEPQNKTAK 593

[Close]

BLAST of Spo12670.1 vs. TAIR (Arabidopsis)
Match: AT2G42810.2 (protein phosphatase 5.2)

HSP 1 Score: 69.3 bits (168), Expect = 6.900e-12
Identity = 53/167 (31.74%), Postives = 88/167 (52.69%), Query Frame = 1


		  
Query: 85  NENT-VDAASE-KDLGNEYFKQKKFNEAIDCYSRSIAF-SPTAVAYANRAMAYLKIKRFQ 144
           NEN+ V  A E K   NE FK  K++ AID Y+++I   S  AV +ANRA A+ K++ + 
Sbjct: 5   NENSDVSRAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKLEEYG 64

Query: 145 EAENDCTEALNLDDRYIKAYSRRATARKELRKLRDSIEDVEFALRLEPQNEDLKKQRAEV 204
            A  D ++A+ +D RY K Y RR  A   + K +D+++D +   RL P + D  ++  E 
Sbjct: 65  SAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRLSPNDPDATRKLKEC 124

Query: 205 KSLLEKAILAKAAGA-ATKAAPVVKEVDTKVDAKGREKRALSAPERS 248
           +  + K    +A     ++   V + +D      G + R+ S P ++
Sbjct: 125 EKAVMKLKFEEAISVPVSERRSVAESID--FHTIGNKPRSSSMPTKT 169

[Close]

BLAST of Spo12670.1 vs. TAIR (Arabidopsis)
Match: AT1G12270.1 (stress-inducible protein, putative)

HSP 1 Score: 64.3 bits (155), Expect = 2.200e-10
Identity = 34/102 (33.33%), Postives = 61/102 (59.80%), Query Frame = 1


		  
Query: 94  EKDLGNEYFKQKKFNEAIDCYSRSIAFSPTA-VAYANRAMAYLKIKRFQEAENDCTEALN 153
           E++ GN++FK++K+ EAI  Y+ +I  +P    AY+NRA +Y K+    E   D  + + 
Sbjct: 386 EREKGNDFFKEQKYPEAIKHYTEAIKRNPNDHKAYSNRAASYTKLGAMPEGLKDAEKCIE 445

Query: 154 LDDRYIKAYSRRATARKELRKLRDSIEDVEFALRLEPQNEDL 195
           LD  + K YSR+A  +  L++  +++E  +  L  +P N++L
Sbjct: 446 LDPTFSKGYSRKAAVQFFLKEYDNAMETYQAGLEHDPSNQEL 487

The following BLAST results are available for this feature:

BLAST of Spo12670.1 vs. NCBI nr
BLAST of Spo12670.1 vs. UniProtKB/TrEMBL
BLAST of Spo12670.1 vs. ExPASy Swiss-Prot
BLAST of Spo12670.1 vs. TAIR (Arabidopsis)

BLAST of Spo12670.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|731327676\|ref\|XP_010674646.1\|	2.2e-169	75.2	PREDICTED: RNA polymerase II-a...	[more]
gi\|731327678\|ref\|XP_010674647.1\|	1.2e-167	75.0	PREDICTED: RNA polymerase II-a...	[more]
gi\|731327680\|ref\|XP_010674648.1\|	7.6e-154	75.1	PREDICTED: RNA polymerase II-a...	[more]
gi\|902189928\|gb\|KNA11502.1\|	4.2e-152	97.0	hypothetical protein SOVF_1346...	[more]
gi\|590644717\|ref\|XP_007031158.1\|	1.2e-114	56.4	Tetratricopeptide repeat-like ...	[more]

BLAST of Spo12670.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0J8CIY9_BETVU	1.5e-169	75.2	Uncharacterized protein OS=Bet...	[more]
A0A0K9QW45_SPIOL	2.9e-152	97.0	Uncharacterized protein OS=Spi...	[more]
A0A061F300_THECC	8.3e-115	56.4	Tetratricopeptide repeat-like ...	[more]
A0A0D2PHE4_GOSRA	1.7e-112	57.2	Uncharacterized protein OS=Gos...	[more]
A0A0B0PNZ3_GOSAR	3.8e-112	55.9	RNA polymerase II-associated 3...	[more]

BLAST of Spo12670.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RPAP3_RAT	4.0e-30	30.7	RNA polymerase II-associated p...	[more]
RPAP3_HUMAN	4.5e-29	29.0	RNA polymerase II-associated p...	[more]
RPAP3_MOUSE	2.4e-27	29.2	RNA polymerase II-associated p...	[more]
RPAP3_CHICK	5.5e-27	28.0	RNA polymerase II-associated p...	[more]
RPAP3_XENLA	8.2e-23	26.5	RNA polymerase II-associated p...	[more]

BLAST of Spo12670.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT1G56440.2	3.3e-99	47.8	Tetratricopeptide repeat (TPR)...	[more]
AT3G17970.1	3.8e-18	45.4	translocon at the outer membra...	[more]
AT5G09420.1	2.1e-16	37.9	translocon at the outer membra...	[more]
AT2G42810.2	6.9e-12	31.7	protein phosphatase 5.2	[more]
AT1G12270.1	2.2e-10	33.3	stress-inducible protein, puta...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001440	Tetratricopeptide repeat 1	PFAM	PF00515	TPR_1	coord: 95..123 score: 3.
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 88..211 score: 3.2
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 88..206 score: 3.29
IPR013026	Tetratricopeptide repeat-containing domain	PROFILE	PS50293	TPR_REGION	coord: 91..191 score: 16
IPR019734	Tetratricopeptide repeat	PFAM	PF13181	TPR_8	coord: 126..154 score: 0.
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 125..157 score: 0.021coord: 91..124 score: 2.9E-4coord: 158..191 score:
IPR019734	Tetratricopeptide repeat	PROFILE	PS50005	TPR	coord: 158..191 score: 7.788coord: 91..124 score: 10.473coord: 125..157 score:
IPR025986	RNA-polymerase II-associated protein 3-like, C-terminal domain	PFAM	PF13877	RPAP3_C	coord: 342..430 score: 1.1
None	No IPR available	unknown	Coil	Coil	coord: 191..211 score: -coord: 164..184 scor
None	No IPR available	PANTHER	PTHR22904	TPR REPEAT CONTAINING PROTEIN	coord: 78..208 score: 1.4E-73coord: 306..391 score: 1.4E-73coord: 226..239 score: 1.4
None	No IPR available	PANTHER	PTHR22904:SF323	CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT	coord: 78..208 score: 1.4E-73coord: 306..391 score: 1.4E-73coord: 226..239 score: 1.4

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding