Spo11902.1 (mRNA)

Overview
NameSpo11902.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionPPDK regulatory protein, putative isoform 2
Locationchr6 : 2225416 .. 2226808 (-)
Sequence length465
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAGCCGCGACCAGGTTCAGTCTCCCAAACCCGACCCCACCTGAACACAAACCTCCGATTCCAACAATATCTCTCTCCTCCGAACCTCCCTCCAAACCCCAGCCTCGGAAACTAAAGGGAAGCGCGAAGCTAAACCTCTGGTCCAGAGCTCGGTCAATACGGTCCGGTCGGAAATTAGAGCGCCCGGCTGAAATTCCGGCCAAGGCGGCGACTCTGGTTGAGAAACCTCTGGTACGAACCGGCGACGCTGTTTCCGATTCTGATAAAGAAGATGACGGCGAAATTAGGGAGGGTAAGTCGATTTATATGGTCTCTGACGGAACTGGATGGACGGCGGAGCATTCCGTTAGCGCGGCGTTAGGGCAGTTTGACCATTGCTTAGTTGATCATGGTTGTTCAGTTAGTACTCACTTGTTTTCTGGGGTAAGTTTGCAAATTTATTCATGTTATTAGTATAATTGTTAGTTCTCATTGAATTAGATTTACTTCCTTTATTTTTAAGTTTTCAATTATCATAATTTGTATTTCTTAGTTGTTTCGATTAGTTTAATTGCTGAAAATTTCATTGATTTTGGTCTGAAATTAAGTGGTGAACATATGTTTGTGGAAGTATCAGGCGTGTACTTTGTTGAGAGCCACAACTTTAATTTTAGAGTTACTATTATTCACATTACTTATATTAGAATTTGTATAAATTTGAGAGGTAAATGTTGAGAATGATTCTCATCCCCTATATATTTAGTTACAAAGAAGCTATAAATGTAAGATGCTTATTTCATTATTGAAGTGTGTAAAAAAAAAAGAAGAAAAGGGAGAGAAAATAAGAGATAAAATAAAGGAGATATAAAGGAGGAAAAGTTTTATATTGAAAAACATATATATATATAGAAATATTTTTTTGTTATCTTGGGTTGTAACCCATATTTGTTTCTCCTTTTTATAATCCTTAATGCTATGTTTGGATATGAGGATTTCATTTGAAATCCCGGAATTGAGTCAATTCCACTGTTTGGATGATTTAGAATTTGAAATTCAGAATTGACCCAAATTCTAAAACAGCCAAGGAGAGCCCATCAAAATAGGGATTTGAAATTACAAGTTAAACTATGTCATTTGAAATTCTCAGCCCATAGCCCATTGCCAACAACTTAAGCGTTTATTTTTTCTCTCTCCTCCCACACAGCTTCCTTTGACATTTTTTTATCTCTCTCTCCCATGAGACTTTGAGCTTCTCTCTCGCTCCTCCGCCACCTTCCTCCCTTCCGATTCGCTTTTGCTATCTCAACAACCTCTCATGTGTAATTCTCTCTCCTTGATTTCTGCTAATATAGAGCACAAATGCTTCTTCGGAGGCCTTGCAATGGCACCGAACTTTGATCTGAAATTATGA

mRNA sequence

ATGTTAGCCGCGACCAGGTTCAGTCTCCCAAACCCGACCCCACCTGAACACAAACCTCCGATTCCAACAATATCTCTCTCCTCCGAACCTCCCTCCAAACCCCAGCCTCGGAAACTAAAGGGAAGCGCGAAGCTAAACCTCTGGTCCAGAGCTCGGTCAATACGGTCCGGTCGGAAATTAGAGCGCCCGGCTGAAATTCCGGCCAAGGCGGCGACTCTGGTTGAGAAACCTCTGGTACGAACCGGCGACGCTGTTTCCGATTCTGATAAAGAAGATGACGGCGAAATTAGGGAGGACTTTGAGCTTCTCTCTCGCTCCTCCGCCACCTTCCTCCCTTCCGATTCGCTTTTGCTATCTCAACAACCTCTCATGTGTAATTCTCTCTCCTTGATTTCTGCTAATATAGAGCACAAATGCTTCTTCGGAGGCCTTGCAATGGCACCGAACTTTGATCTGAAATTATGA

Coding sequence (CDS)

ATGTTAGCCGCGACCAGGTTCAGTCTCCCAAACCCGACCCCACCTGAACACAAACCTCCGATTCCAACAATATCTCTCTCCTCCGAACCTCCCTCCAAACCCCAGCCTCGGAAACTAAAGGGAAGCGCGAAGCTAAACCTCTGGTCCAGAGCTCGGTCAATACGGTCCGGTCGGAAATTAGAGCGCCCGGCTGAAATTCCGGCCAAGGCGGCGACTCTGGTTGAGAAACCTCTGGTACGAACCGGCGACGCTGTTTCCGATTCTGATAAAGAAGATGACGGCGAAATTAGGGAGGACTTTGAGCTTCTCTCTCGCTCCTCCGCCACCTTCCTCCCTTCCGATTCGCTTTTGCTATCTCAACAACCTCTCATGTGTAATTCTCTCTCCTTGATTTCTGCTAATATAGAGCACAAATGCTTCTTCGGAGGCCTTGCAATGGCACCGAACTTTGATCTGAAATTATGA

Protein sequence

MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKLERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREDFELLSRSSATFLPSDSLLLSQQPLMCNSLSLISANIEHKCFFGGLAMAPNFDLKL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo11902Spo11902gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo11902.1Spo11902.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11902.1.CDS.2Spo11902.1.CDS.2CDS
Spo11902.1.CDS.1Spo11902.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11902.1.exon.2Spo11902.1.exon.2exon
Spo11902.1.exon.1Spo11902.1.exon.1exon


Homology
[Close]
BLAST of Spo11902.1 vs. NCBI nr
Match: gi|902216793|gb|KNA17527.1| (hypothetical protein SOVF_078970 [Spinacia oleracea])

HSP 1 Score: 188.3 bits (477), Expect = 9.700e-45
Identity = 100/109 (91.74%), Postives = 101/109 (92.66%), Query Frame = 1 

		  

Query: 1   MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL 60
           MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL
Sbjct: 1   MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL 60

Query: 61  ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREDFELLSRSSAT 110
           ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIRE   +   S  T
Sbjct: 61  ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREGKSIYMVSDGT 109
[Close]
BLAST of Spo11902.1 vs. NCBI nr
Match: gi|731351311|ref|XP_010686969.1| (PREDICTED: probable pyruvate, phosphate dikinase regulatory protein, chloroplastic isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 112.8 bits (281), Expect = 5.200e-22
Identity = 69/109 (63.30%), Postives = 79/109 (72.48%), Query Frame = 1 

		  

Query: 1   MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL 60
           + A T FS+ +PTP E K  IPTI LSS+ PS+PQ RK KGSAKLNLWSRARSIRSGRKL
Sbjct: 2   LAATTSFSIRDPTP-EPKLSIPTIYLSSDRPSEPQTRKQKGSAKLNLWSRARSIRSGRKL 61

Query: 61  ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREDFELLSRSSAT 110
            RP E P +AA  VEK   RTGDAVSDS++EDDGE R+   +   S  T
Sbjct: 62  NRPVENPVQAAVPVEKD--RTGDAVSDSEREDDGETRDGKSIYMVSDGT 107
[Close]
BLAST of Spo11902.1 vs. NCBI nr
Match: gi|731351309|ref|XP_010686968.1| (PREDICTED: probable pyruvate, phosphate dikinase regulatory protein, chloroplastic isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 112.8 bits (281), Expect = 5.200e-22
Identity = 69/109 (63.30%), Postives = 79/109 (72.48%), Query Frame = 1 

		  

Query: 1   MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL 60
           + A T FS+ +PTP E K  IPTI LSS+ PS+PQ RK KGSAKLNLWSRARSIRSGRKL
Sbjct: 2   LAATTSFSIRDPTP-EPKLSIPTIYLSSDRPSEPQTRKQKGSAKLNLWSRARSIRSGRKL 61

Query: 61  ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREDFELLSRSSAT 110
            RP E P +AA  VEK   RTGDAVSDS++EDDGE R+   +   S  T
Sbjct: 62  NRPVENPVQAAVPVEKD--RTGDAVSDSEREDDGETRDGKSIYMVSDGT 107
[Close]
BLAST of Spo11902.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RF69_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_078970 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 6.800e-45
Identity = 100/109 (91.74%), Postives = 101/109 (92.66%), Query Frame = 1 

		  

Query: 1   MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL 60
           MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL
Sbjct: 1   MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL 60

Query: 61  ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREDFELLSRSSAT 110
           ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIRE   +   S  T
Sbjct: 61  ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREGKSIYMVSDGT 109
[Close]
BLAST of Spo11902.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EM25_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g187290 PE=3 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 3.600e-22
Identity = 69/109 (63.30%), Postives = 79/109 (72.48%), Query Frame = 1 

		  

Query: 1   MLAATRFSLPNPTPPEHKPPIPTISLSSEPPSKPQPRKLKGSAKLNLWSRARSIRSGRKL 60
           + A T FS+ +PTP E K  IPTI LSS+ PS+PQ RK KGSAKLNLWSRARSIRSGRKL
Sbjct: 2   LAATTSFSIRDPTP-EPKLSIPTIYLSSDRPSEPQTRKQKGSAKLNLWSRARSIRSGRKL 61

Query: 61  ERPAEIPAKAATLVEKPLVRTGDAVSDSDKEDDGEIREDFELLSRSSAT 110
            RP E P +AA  VEK   RTGDAVSDS++EDDGE R+   +   S  T
Sbjct: 62  NRPVENPVQAAVPVEKD--RTGDAVSDSEREDDGETRDGKSIYMVSDGT 107
The following BLAST results are available for this feature:
BLAST of Spo11902.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3
Match NameE-valueIdentityDescription
gi|902216793|gb|KNA17527.1|9.7e-4591.7hypothetical protein SOVF_0789... [more]
gi|731351311|ref|XP_010686969.1|5.2e-2263.3PREDICTED: probable pyruvate, ... [more]
gi|731351309|ref|XP_010686968.1|5.2e-2263.3PREDICTED: probable pyruvate, ... [more]
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BLAST of Spo11902.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RF69_SPIOL6.8e-4591.7Uncharacterized protein OS=Spi... [more]
A0A0J8EM25_BETVU3.6e-2263.3Uncharacterized protein OS=Bet... [more]
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BLAST of Spo11902.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11902.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0005524 ATP binding
molecular_function GO:0016772 transferase activity, transferring phosphorus-containing groups