Spo11613.1 (mRNA)

Overview
NameSpo11613.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 39731668 .. 39734757 (+)
Sequence length267
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGATTTTCATGGAGTTTGGATGGCTTGCAGAATTTCGTTTGGGAGAACGACTAACACATCTGTAGACTCGTCAAAGACCCTTGGTTTTTCTGGATTTGGTGTTGATACGGTGGTGTTGGTTAGTGGTAAGTCTGCGGTTAGGATGTGTTTGAAGCTCAATTTTGGTGTTTGGGGAGTTGTTGGTTTGTCAATGAGCATAGGGGAGGTTGGGGTAAAGGTTTGGGTGTTAGGGATGTTGATGGTGGAGGAGTGGTGGTCACCAGGTAACGGAGAAGTGTCCGCGAAGTTTGCCGTTTGTAGCCTTGACTGGTCGGAAGGGTTTTGAGGGGGGAGGGGAGGGGGGAGAGGTTCAGGGGGTTCCATTTTCTGTTTTTATTCTTACCTTCTCCAATTATTCATTTCTCTCTCTTTTCTCCCTCGTCTTTATGGTTCCAGTTTTTATATGTAATGTAACCGGCGACACCATCAACTTGACGGTGTGGCGTGTTCACACTTAAAAATAAACCCAGCGTGTTTAAAGCCCATCACGTTGGTTAACGGAATATAAAAGTAACATCGGCATAGAAAATAAAGTAACATTAGTCTATACAAGGAACCTCTAACATGAAGCTGCAATAAAACAAGAAAAGTAACGACGAATACAATTTATAAGTAACACCAGCATAGAAAGTAAGATAACACCAGTCTATATAAGGAACCTCTAACATGAAATTGAATATGCTGCAATAAAATAAGAAAAGTAACAGTGAATACAATATATAAGTAACACCAGCCTAGAAAGTCAAGTAGCATCCGTTTATACAAGGAACCTCTAACATGAAATTGAAGAAACTGCAATAAATGAAGAAAAGTAACAGCGAATACAATGTATAAGTAACACCAGCATAGGAAGTCAAGTAACACCGGGCTATACAAGGAACCTCTAACATGAAATTGAAAAAAATGCAGTAAAACAAGAAAAGTAACCGTGTATACAATGTACAAGTAACACCGACATAGAAAATCAAGTAACACCAGTCAATAACCTTATCCATAGTAGTTGTGTGCGAGAGAGTTGCGCCCGTGCGTCACACCATCAAGTTAATGGTGTGGCTGGTCACACAAGAGAAGCGTTGTTTTTTAATTTGGTCGTTAAGCCGTAAATAGTACACTATTTTCGGCCTTTACTTAATTGTTTTCTTTTCAGTTTTTGTTTTCTTTTTGTTTGTTTACCGTTGTTTTGTTCCAAAATTTAATTGGGATTTTTCCAAGATTTTTCCAGCTTGGTTTTTTATCCTCGTCCATGGATGATAATTTTATTTTTAATGTTTCAATAATTTTGAAGGTGATATGGATTCATATGGGTTTATGGATTGTTATCAATTTGTTGATCGAGAATTCGTATGCAGATTGCAAAAGGCTCTACTCGAAATATGCGAAAACATCAAAAATCACTGCTCGCATTGGGCAAGCTAGAAGCAGTAGAGTACGAGTTGTGCTTTACGCATGATACACAATAGTCACTGTTCTGCATGATAGCACATTTTTTCTCTAAATTTTTGTTATAGATATATTTTATCAACGTAAATGTTATATGAGTAATTATTAATAATATTATTATTTCCCTTAAAAAAAAGTTATTTTTTAGTTTTTTGTAGAGAGAGCCACAAAAGACAAAATGGAAAATGATGTAGATGAGATTCGATCCGAGGTCTTGGTAACACCCTCTCAAGACTCTACCAACTAAGGCTTCCTTCTGTCCGACTTATTTTGTCTTAACTTATACTTCCCCTGTTCTTATTTACATGACAAAATTGGGTTTATGATACTATTCACACAACCTCCTTTGATTTCATTTTGTGAATTATATTTAAGAAAAAAACATTGTCGGGTGGGATCTTATTAGATTTGTCTCAATAAATAATTTTTAAATATCAACTTTTTATAATATTTTCTTATTCACAATTAGAGATATTAACGTTTGAAATTATGCATTGACAAACGTGCCTAAATAACTGTGTCATTTAAAAAAGAACAGAGGAAGTATTATCTAAACTTATCTAAACTTAAATGAATTTATCTGAACTTATTTGATATGAAATAAGTCAAACATTTTTTTTTTTGAGGGGGAATAAGTCAAACATAATAAAGCCTAAACTAGTTGGAAAGAGAGAGAGAGAGAGAGAGGGGGAGAGNGGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGTAGTGAGTTGTTAACCGTACTAGTTATCTACTCCCTCCGTCCCATAATTATCTTCCTGTTTGACCAAAAACACGGATTTTAAGAAAAGTGGAATATAGTAAATGAAAAGTGGAATAAAGTACAAATGATGATTGAGTTGTATGGAAAAGTGGAATAAAGTACATGTGAAAGAGAATATAGTACATGGGTGGGGTTTTCAATTTAATTTTAATTAATATAGTACATGAAAAAGTGGGGACCTTAGTAGCCAAAATTAGAAACAGGAAGATAATTTTGGGACGCTCGTTTAGGAAAGCATGAAGATAATTTTGGGACGGAGGGAGTACCATACATTTCTATTTTTAGAAAGAAAAAGTCTACGTGCTAGGTTTGTAAGGATAAAGGAGGACCACACATGAACATTATTTAAGAAGTACATAGTGCTAATGGCCTTGATGCTCCCATTCGATAACAAGTTGTAGCACGCCTATTATTGCAAGAGTGAAGAGGGTATTGTTAACAGGTAAGGAGTATCTTATTATTAGTTTCTTTGATTTCCTATTCTTCTAGTTTTTTTAGCTCATGATCATGCAATGAACTAGTTGCTTCTAGGTAGTCATTTACTCTCGAACGTTAGTACTCTGATCTTATAAGGTATTTGGATGTTTTGTAGCACTAATTAAACATTAAAATGAATCATACTTAACTGTAAGTATTACACACTTAATTAACACATGATTTTATATATATATAAAAAATGTAATACCCGTATGTTTTTTATGATTTTTGTTTGTAGGAAAACGTTAGACGAGCATTATTATACTAATTTTTGTTTAGAAGAGTTTCATTATAATTGGTATTATGATCTTCACTTGACACATTTTTATCCCACACAGGTAA

mRNA sequence

ATGGATGATTTTCATGGAGTTTGGATGGCTTGCAGAATTTCGTTTGGGAGAACGACTAACACATCTGTAGACTCGTCAAAGACCCTTGGTTTTTCTGGATTTGGTGTTGATACGGTGGTGTTGGTTAGTGGTAAGTCTGCGGTTAGGATGTGTTTGAAGCTCAATTTTGGTGTTTGGGGAGTTGTTGGTTTGTCAATGAGCATAGGGGAGGTTGGGGTAAAGCACGCCTATTATTGCAAGAGTGAAGAGGGTATTGTTAACAGGTAA

Coding sequence (CDS)

ATGGATGATTTTCATGGAGTTTGGATGGCTTGCAGAATTTCGTTTGGGAGAACGACTAACACATCTGTAGACTCGTCAAAGACCCTTGGTTTTTCTGGATTTGGTGTTGATACGGTGGTGTTGGTTAGTGGTAAGTCTGCGGTTAGGATGTGTTTGAAGCTCAATTTTGGTGTTTGGGGAGTTGTTGGTTTGTCAATGAGCATAGGGGAGGTTGGGGTAAAGCACGCCTATTATTGCAAGAGTGAAGAGGGTATTGTTAACAGGTAA

Protein sequence

MDDFHGVWMACRISFGRTTNTSVDSSKTLGFSGFGVDTVVLVSGKSAVRMCLKLNFGVWGVVGLSMSIGEVGVKHAYYCKSEEGIVNR
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo11613Spo11613gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo11613.1Spo11613.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11613.1.exon.1Spo11613.1.exon.1exon
Spo11613.1.exon.2Spo11613.1.exon.2exon
Spo11613.1.exon.3Spo11613.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11613.1.CDS.1Spo11613.1.CDS.1CDS
Spo11613.1.CDS.2Spo11613.1.CDS.2CDS
Spo11613.1.CDS.3Spo11613.1.CDS.3CDS


Homology
The following BLAST results are available for this feature:
BLAST of Spo11613.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11613.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11613.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11613.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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