Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATTTCGTCTCAAACATTTTTGAGAAGGAATTTATGTCTTCTTCATCACTCTCATACAAACAAACAAACAAATTTTAACTTTGAGAAACCCATGGCCTCCACAAAGTTTGAGAAAGCTTTCTCACCAGATTTTTTAAACGTAGAAACTAGAAGCACCTCATTCACCACACAGTTTCTTAACACTTCATGCCGTTCATTGTTTATAGGAATATTTTTTCGGTGGATTAAATTAATCATAAATAAATACTCCGTATCAAACTACCCCATTCTGCAACCTACCATTAAAAAACTTTCCTTAAGCCATGGCAATCGAGGTAAGTTTTCTTTATCATCAAATTAACATTCCTTTCCCTTTTATCAACATTTCTGATCCGAAATAAGCCTGGACCCCGATTCGCTGCCAGACTGAAGCCACTTGGTCACCGAGACCTGCGTTGTTGGTTTACTCTTAAAGTCTTTAAGTTTCAAACAAGTACTCCGGATTTATTCATACTAATAAAGTAATTTGATTAGATTAATTATTACTTCAACAGGCTTGGTATACGGATGAAAGCAATGAGGATCCAAGGCTTCCGCATCATCGAAACCCTAAAGAATTTGTCTCCCTTGACACTCTCTCTGGTTTATCAATTCTCTTTGTTTTTATTATTCAATTTTTCTTCTTTTCTGGGAATTGAGTGTTAATATTTATGATGGGGATGATTTTTGTTGTTGTTGTTCTTATTGAAGAGATTGGAGTTTTACACTGGAAATTGAATGCTAAAGACTATGAAAATGACCCCGAACTGGAGAAGATTAGGAATGAGAGGGGTTACAACTACATGGTAAGTTTTCAATTTTATTGAAACATGAATAATTTTCCTTTCCAGCATAAACTGGAGTAATGGGTTCAATCTTTTTTTTGTTGTTGCTTTTTTAATTAAGCATTGTGAAATTCCAACATATTTATGGGACAGTCAAAATGAAATTGAGTTGATTGATATGAGTAATATAAAGAAAAGTAATTCCAATTAAAATATACGTTTATTATTTGCTAAATCATGTGGTTGCAAGTGAGGAAAGTATGTGCAAATGATTTGGATGCTTGAGAGGGAAATTTTAAAGGTTTAGTTTAATGTTATGTATTGACTTAAGGAACTTACATTTGTAATGGTATATTTATGAGGATCAATCCGGAGTAGATACCTTTTGATCCTGAAATTCGTTTGAAATACAGTTTGCACTACTCTGTAGTTCATGGTTCTGGTCGGTTTTAAATGTAAATCTTTGACAAGCATTATGAATTTCGTATATGTTGCTGGATGTCCATCTCTGATGTTGATATCATCTGGTATCGTAGTCTGTTGTCCCTGGGTCTTAGCTAACGGGGTCTGAAATTGCCGCCTAAAAATATATCTTTATATTGATTGTTTGCTGGAATAGTAAGCTTAGTTATGGTTAATCAGGCATCTTGCCCAACAATGAGTTGATGCACTTTACTTTAATCTTGTAAGTTATCGGGTTTCTTTGATTTTTTATTGAAGGAAAGAAGACACCTTTTCAAGGTTTCATTTTTTCCAGAACAGATATCTTTTGCAGCTGAATTAACACCAAAACTGAAAACAACTGCAGAAGAAACACCATTATATTATAGAAAATTAATATAATGGGGAAAAGGAGAGACGGTCTCTCTCGTAGCAGATTAGCAGGGTGGAGTTCTAATCTTAAACCTCACCTAGTAATCTGCTGATTCGAGTTCTATGATTTAGTGGTTTTACTACCTTGCCCTCTGATTGGATGAGCTTGATGATACTCTGAAGTGTTAACCATCATATTCGAAATTCTATTCTCCTCAAAATGAGTCTCTCTGGTTTCGTTTCTTCTCAAAATTGCTTATGGTGCTATACTTGAGCCTTTATTTCTTTAGAAGTCTTGATAAACTAGGCTGCACAAATTGTAACACGGTAATACCAGTTGTGGAATGGTAGCATACCTCATGGGAACTCTGTAATTGCAAGCTATCTTCATGGGGAGCCTTTGTTTATTCTAAAGCACTTGGCTCGGAGTTGACATATGCTGGACAGGACAGAGTGGCAGACTTGACTACAGCAGCTGAGGAAAAAAACTAGCCTTGGCAGACTGACGTTGTTTCATAATTAGTCCGTAAGAAACTATATTCTCGAGGGTGAGAGACAATACCAGAGATTCAAAAAATTATGTGGAAATTTAATTTATTTTGGCTCTTATCCCTGATTGTGATTTTCTTTCGGAAATCCTCAATTTGGCATCTTACAAAATTTAAATGTGCTGACTAAAAAGGACTTGAGACGTCCTCATTCTTGTGTTTTCTCTATTAAGTTGCGGGATGTTTTGTCTTTCCGAGGTTAGGATGATGTTGAATACTGATATTGTTTAGAGATTCAAAATATTATATTGGAGTTCATTTTTTTCTGGCTCTTATCCTACAAAATATAAGCACGCACAGTTGGCAAAAGTTTAAGCTATGTCCTCGTTCTTGTGTTTTTCTCGGTAAAGTTGTGGGATGTTTTCTGTGTAGAGGTTAGGAGCTCATACGATGTACTTCTGATGTGCAGGATATTCTTGATTTGTGTCCTGAAAAGGTGGAGAATTATGAGCAGAAGCTGAAGGTCTTCTTCACAGAACACATACATGGAGATGAAGAAATACGCTACTGCTTAGAAGGAAGTGGCTACTTTGATGTGCGAGACAAGGCAGACCGCTGGATTCGGATCTGGCTCAAAGAGGGTGATATGATCATACTGCCAGCTGGAATTTACCACCGTTTCACCCTTGACACCTCTAATTATGTGAAGGCAAGTATAATACAGTAGTAGTATTATGTGAGACAGTTTAGTTTACCACTGTTGAGCTTTGCAATCCTCTTCTTAGATTTGAAGGTTTTTTACCTATATTTCTTTGTTACCACTGAAGGGTTATGAACATAATTGGTAACTGAAATAACGATACGTTCATAACCAACATGCAGCTGATGCGGCTTTTCATAGGAGAACCAGTGTGGACACCATTTAATCGGCCACAGGAGGATCATCCGGTTAGAAAGAAGTACGTAAAGAATTTGGCAGAGAAAATGAGAGTTCCTGTTTCAGCTCACTAGTCATTCGAGCCATACATTGTGGTTGCTGCTCTTGGCTGTCTTGGGTATCTTAATACGAAGTAATATATTTTGTGGCCTGTGAACCTTGATATGCTACGCTGCGGCTGCTTGTAATGCATAGCAGGAAATAGTAGGTGTAAAAATGTTAACAACTTTTATATAAGCCGGTCTAATACATAAAAGCGCAATGTTGTCACGCATGACGTCATCAACGCTTTTTTTTAAAAAAAACATATATTTATTTCTCTTTTTTCATTTTTATTTCTATGTCGTCAAACAAGATTTGATTCTCTCTCCCCCTCAAACTCTTTGCCCCTCTCTCTCCTCAAACATGCCGCTTTCCTCGGCGCCGTTTGAGTTCTCATTCATGGCTACCACGATGTTAAAGTGGCCTCTCCTTTACCTCCTCTCTCTCCTCAAAAATTCTCTGCTCAAATCAGGAAATCCTAAGATTTCTCCCATGGTGTCGAACAAGAAAGATTCAAAGGTTTTCGATTTTGCTGAACTTGTACCAAGATGACGACAACGACGATATGAAGGATTTCGGGAAAAAACAAAGAGGAGGACGGTGACGAGAGAGAATCAAGCCTCAACAGAGAGAAGATGAATTGCAGAAGAATGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACCATTTTAGATCCTTCGTCGCCATCGACAACTGCGGCAGCACTAGCATTTACAAGGCGAAGTACGGCGGGGTCAAAAGTGATGGGCGAGAAACCTGAGGTGAAGCCGGAAATAGCGATTCCTTTCCCGCCCACTCCATGATCTTATTATTAATTAGATAATTCGAGGAGCGTTATGTAAACACGAAATTGTTCCCTGCCTCTGGGGATATTAATATGAGCGTTGAACAAGGGATTTTTTTTAATTCTTACCAAATTAATGTGTTCCTTTTTCAAATTAATTCTTTATGGGGAGGTGAATACCAG ATTTCGTCTCAAACATTTTTGAGAAGGAATTTATGTCTTCTTCATCACTCTCATACAAACAAACAAACAAATTTTAACTTTGAGAAACCCATGGCCTCCACAAAGTTTGAGAAAGCTTTCTCACCAGATTTTTTAAACGTAGAAACTAGAAGCACCTCATTCACCACACAGTTTCTTAACACTTCATGCCGTTCATTGTTTATAGGAATATTTTTTCGGTGGATTAAATTAATCATAAATAAATACTCCGTATCAAACTACCCCATTCTGCAACCTACCATTAAAAAACTTTCCTTAAGCCATGGCAATCGAGGCTTGGTATACGGATGAAAGCAATGAGGATCCAAGGCTTCCGCATCATCGAAACCCTAAAGAATTTGTCTCCCTTGACACTCTCTCTGAGATTGGAGTTTTACACTGGAAATTGAATGCTAAAGACTATGAAAATGACCCCGAACTGGAGAAGATTAGGAATGAGAGGGGTTACAACTACATGGATATTCTTGATTTGTGTCCTGAAAAGGTGGAGAATTATGAGCAGAAGCTGAAGGTCTTCTTCACAGAACACATACATGGAGATGAAGAAATACGCTACTGCTTAGAAGGAAGTGGCTACTTTGATGTGCGAGACAAGGCAGACCGCTGGATTCGGATCTGGCTCAAAGAGGGTGATATGATCATACTGCCAGCTGGAATTTACCACCGTTTCACCCTTGACACCTCTAATTATGTGAAGCTGATGCGGCTTTTCATAGGAGAACCAGTGTGGACACCATTTAATCGGCCACAGGAGGATCATCCGGTTAGAAAGAAGTACGTAAAGAATTTGGCAGAGAAAATGAGAGTTCCTGTTTCAGCTCACTAGTCATTCGAGCCATACATTGTGGTTGCTGCTCTTGGCTGTCTTGGGTATCTTAATACGAAGTAATATATTTTGTGGCCTGTGAACCTTGATATGCTACGCTGCGGCTGCTTGTAATGCATAGCAGGAAATAGTAGGTGTAAAAATGTTAACAACTTTTATATAAGCCGGTCTAATACATAAAAGCGCAATGTTGTCACGCATGACGTCATCAACGCTTTTTTTTAAAAAAAACATATATTTATTTCTCTTTTTTCATTTTTATTTCTATGTCGTCAAACAAGATTTGATTCTCTCTCCCCCTCAAACTCTTTGCCCCTCTCTCTCCTCAAACATGCCGCTTTCCTCGGCGCCGTTTGAGTTCTCATTCATGGCTACCACGATGTTAAAGTGGCCTCTCCTTTACCTCCTCTCTCTCCTCAAAAATTCTCTGCTCAAATCAGGAAATCCTAAGATTTCTCCCATGGTGTCGAACAAGAAAGATTCAAAGGTTTTCGATTTTGCTGAACTTGTACCAAGATGACGACAACGACGATATGAAGGATTTCGGGAAAAAACAAAGAGGAGGACGGTGACGAGAGAGAATCAAGCCTCAACAGAGAGAAGATGAATTGCAGAAGAATGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACCATTTTAGATCCTTCGTCGCCATCGACAACTGCGGCAGCACTAGCATTTACAAGGCGAAGTACGGCGGGGTCAAAAGTGATGGGCGAGAAACCTGAGGTGAAGCCGGAAATAGCGATTCCTTTCCCGCCCACTCCATGATCTTATTATTAATTAGATAATTCGAGGAGCGTTATGTAAACACGAAATTGTTCCCTGCCTCTGGGGATATTAATATGAGCGTTGAACAAGGGATTTTTTTTAATTCTTACCAAATTAATGTGTTCCTTTTTCAAATTAATTCTTTATGGGGAGGTGAATACCAG ATGGCAATCGAGGCTTGGTATACGGATGAAAGCAATGAGGATCCAAGGCTTCCGCATCATCGAAACCCTAAAGAATTTGTCTCCCTTGACACTCTCTCTGAGATTGGAGTTTTACACTGGAAATTGAATGCTAAAGACTATGAAAATGACCCCGAACTGGAGAAGATTAGGAATGAGAGGGGTTACAACTACATGGATATTCTTGATTTGTGTCCTGAAAAGGTGGAGAATTATGAGCAGAAGCTGAAGGTCTTCTTCACAGAACACATACATGGAGATGAAGAAATACGCTACTGCTTAGAAGGAAGTGGCTACTTTGATGTGCGAGACAAGGCAGACCGCTGGATTCGGATCTGGCTCAAAGAGGGTGATATGATCATACTGCCAGCTGGAATTTACCACCGTTTCACCCTTGACACCTCTAATTATGTGAAGCTGATGCGGCTTTTCATAGGAGAACCAGTGTGGACACCATTTAATCGGCCACAGGAGGATCATCCGGTTAGAAAGAAGTACGTAAAGAATTTGGCAGAGAAAATGAGAGTTCCTGTTTCAGCTCACTAG MAIEAWYTDESNEDPRLPHHRNPKEFVSLDTLSEIGVLHWKLNAKDYENDPELEKIRNERGYNYMDILDLCPEKVENYEQKLKVFFTEHIHGDEEIRYCLEGSGYFDVRDKADRWIRIWLKEGDMIILPAGIYHRFTLDTSNYVKLMRLFIGEPVWTPFNRPQEDHPVRKKYVKNLAEKMRVPVSAH Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo11549.1 vs. NCBI nr
Match: gi|902210037|gb|KNA16326.1| (hypothetical protein SOVF_089640 [Spinacia oleracea]) HSP 1 Score: 404.8 bits (1039), Expect = 8.000e-110 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1
BLAST of Spo11549.1 vs. NCBI nr
Match: gi|731372866|ref|XP_010666471.1| (PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 349.7 bits (896), Expect = 3.100e-93 Identity = 158/187 (84.49%), Postives = 172/187 (91.98%), Query Frame = 1
BLAST of Spo11549.1 vs. NCBI nr
Match: gi|388509288|gb|AFK42710.1| (unknown [Lotus japonicus]) HSP 1 Score: 335.9 bits (860), Expect = 4.600e-89 Identity = 149/187 (79.68%), Postives = 169/187 (90.37%), Query Frame = 1
BLAST of Spo11549.1 vs. NCBI nr
Match: gi|731389367|ref|XP_010649962.1| (PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Vitis vinifera]) HSP 1 Score: 335.5 bits (859), Expect = 6.000e-89 Identity = 145/187 (77.54%), Postives = 168/187 (89.84%), Query Frame = 1
BLAST of Spo11549.1 vs. NCBI nr
Match: gi|720000920|ref|XP_010256185.1| (PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Nelumbo nucifera]) HSP 1 Score: 332.4 bits (851), Expect = 5.100e-88 Identity = 146/187 (78.07%), Postives = 166/187 (88.77%), Query Frame = 1
BLAST of Spo11549.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R9Z4_SPIOL (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Spinacia oleracea GN=SOVF_089640 PE=3 SV=1) HSP 1 Score: 404.8 bits (1039), Expect = 5.600e-110 Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1
BLAST of Spo11549.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B8E4_BETVU (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Beta vulgaris subsp. vulgaris GN=BVRB_002280 PE=3 SV=1) HSP 1 Score: 349.7 bits (896), Expect = 2.100e-93 Identity = 158/187 (84.49%), Postives = 172/187 (91.98%), Query Frame = 1
BLAST of Spo11549.1 vs. UniProtKB/TrEMBL
Match: I3SR18_LOTJA (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 335.9 bits (860), Expect = 3.200e-89 Identity = 149/187 (79.68%), Postives = 169/187 (90.37%), Query Frame = 1
BLAST of Spo11549.1 vs. UniProtKB/TrEMBL
Match: M1A7S6_SOLTU (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Solanum tuberosum GN=PGSC0003DMG400006450 PE=3 SV=1) HSP 1 Score: 331.6 bits (849), Expect = 6.000e-88 Identity = 143/187 (76.47%), Postives = 169/187 (90.37%), Query Frame = 1
BLAST of Spo11549.1 vs. UniProtKB/TrEMBL
Match: A0A059D1Q9_EUCGR (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Eucalyptus grandis GN=EUGRSUZ_B01018 PE=3 SV=1) HSP 1 Score: 331.3 bits (848), Expect = 7.800e-88 Identity = 146/187 (78.07%), Postives = 167/187 (89.30%), Query Frame = 1
BLAST of Spo11549.1 vs. ExPASy Swiss-Prot
Match: MTND1_VITVI (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Vitis vinifera GN=VIT_05s0020g04070 PE=3 SV=1) HSP 1 Score: 330.9 bits (847), Expect = 9.200e-90 Identity = 145/188 (77.13%), Postives = 168/188 (89.36%), Query Frame = 1
BLAST of Spo11549.1 vs. ExPASy Swiss-Prot
Match: MTND4_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 OS=Arabidopsis thaliana GN=ARD4 PE=1 SV=1) HSP 1 Score: 324.3 bits (830), Expect = 8.600e-88 Identity = 142/187 (75.94%), Postives = 163/187 (87.17%), Query Frame = 1
BLAST of Spo11549.1 vs. ExPASy Swiss-Prot
Match: MTND1_PHYPA (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_128349 PE=3 SV=1) HSP 1 Score: 278.5 bits (711), Expect = 5.400e-74 Identity = 115/173 (66.47%), Postives = 147/173 (84.97%), Query Frame = 1
BLAST of Spo11549.1 vs. ExPASy Swiss-Prot
Match: MTND2_ORYSJ (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. japonica GN=ARD2 PE=2 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 7.100e-74 Identity = 119/177 (67.23%), Postives = 146/177 (82.49%), Query Frame = 1
BLAST of Spo11549.1 vs. ExPASy Swiss-Prot
Match: MTND2_ORYSI (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. indica GN=ARD2 PE=2 SV=2) HSP 1 Score: 278.1 bits (710), Expect = 7.100e-74 Identity = 119/177 (67.23%), Postives = 146/177 (82.49%), Query Frame = 1
BLAST of Spo11549.1 vs. TAIR (Arabidopsis)
Match: AT5G43850.1 (RmlC-like cupins superfamily protein) HSP 1 Score: 324.3 bits (830), Expect = 4.900e-89 Identity = 142/187 (75.94%), Postives = 163/187 (87.17%), Query Frame = 1
BLAST of Spo11549.1 vs. TAIR (Arabidopsis)
Match: AT4G14710.5 (RmlC-like cupins superfamily protein) HSP 1 Score: 272.3 bits (695), Expect = 2.200e-73 Identity = 112/176 (63.64%), Postives = 146/176 (82.95%), Query Frame = 1
BLAST of Spo11549.1 vs. TAIR (Arabidopsis)
Match: AT4G14716.1 (acireductone dioxygenase 1) HSP 1 Score: 266.9 bits (681), Expect = 9.200e-72 Identity = 112/173 (64.74%), Postives = 144/173 (83.24%), Query Frame = 1
BLAST of Spo11549.1 vs. TAIR (Arabidopsis)
Match: AT2G26400.1 (acireductone dioxygenase 3) HSP 1 Score: 260.8 bits (665), Expect = 6.600e-70 Identity = 109/172 (63.37%), Postives = 141/172 (81.98%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo11549.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo11549.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo11549.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo11549.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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