Spo11213.1 (mRNA)

Overview
NameSpo11213.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 10996699 .. 10999725 (-)
Sequence length1061
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTATTCAAGTGTATGTAGTTAACTTTATTCTATAATTTGTTTCTGTTGATCACCGAAGCCTAATTCTTTTCTCGTTTCCTCTTGATGAGTCATAAAAACAATTGTTTAAGAGAAGTCAACTTGTACAGAAACTGATTCCTTTCCTTCACTTGCGCACTACACACATCACCTCGCCTCTCCCTCCTTCCTGCTCCTTGCGTCGCCACCCCGCCAGTCGTTTCCCTCTCATCGGCGACACTGGTTCGTTGTTGTTGCGTTGGTTCTGCTGCTGTTCCCCTCTCTCGTCTCTCCTCCATCTCGTCCCTCTTCCATCTCGTCCAAGCTTCGTGATGCCGCCGCCGATGGTGGCCGCTAAACCACCCTCATCTAGACGCCCTCTTCAATTGGTAAACCATCTAAATCCTTCCATAAATTGATTGAATTAAATTATGATTTAAAATTCCAAACCCTAACTAATTGAATTTCTCTCTCCTCTTGTGGGTGCGCTATCCCTTTGGGTTGCCGGTGCGATGGTGTTCCATCGCCGTTGTCGTATTTTGTTGGAGGTTGATCGGTGTTGATCGTTGTGTTCTTGTTCCTCTCCTCGACTCATCTCCCCTGCTTCACTCCTCTACCTCTCCTCTCCTCCGCTAGACTCACGGAGGGCCACCCCTCGTGGCTCTGCCGGAGCTGCTCCTGCTGCTATTCCGTTGATATTGTTGTTGTGTTATCTGTCTTATGGTTGTTGTTGTTGCTACTTCCCTGCCTCTCTATTTCTCTTATGGGTATAATCTCAAACCCTACTTATTTCTTATTGATGATTTTGTTACCTGGGAAAATGGAAGTCATGTTTAATAAATATAGTAATGATTCCAAATATTTGGTGACTTCACCAGTTATAATTATAAATTTAATATCTTTGCCTTTTGGTTCTAGAAGATGACAGTAATGCCCAATTCTTGTGTGGGGAATCTATTTCCCTATTGTCACTATGTTTTTAACCGTGTTCTGAAATTCACATTTCTCATCCCTGTTTCAACTAAGCTAAAACAGGTTTCCATTTTTTCCCCTCAATTTGTTTGGAATTATTTGGATATGTCACGAGCCTTAAGTAAAAAATCAATGCTACCTGAATTAGAGGTTGTGTTGATGTTAAACCATTTATGCAAGATACCTGAGTTCTAGTGTTCTCTTAAATATGGAATTGGGTTTGGCATCATAAAAAAGGGGTTTGAGTAAGTTCTGCATATGTAACACTACTAGATTTTATACATTTAATGAGAACATATTAAATATGAAAGTATATTATGGCCATTGGTGCTACGTTTGGCTGAAGATTCATCAATTACATTGACTTGACAGCTGAAGATCTTTATGTCGTCGCATTACAAGATTGTAAAAACCCCTGCAAATTAAAATTCCGTAATCTTGAAACAAATTGAGAGATTTCATACCTTCTCATTATTTGAATATATTACAGGAATCAGGCAGAGCAAAGTACTATTTTTAATGGGCAATAATATCCAGCTAGAGACTTTGGTTAGTGTAGATTTGAGGCAGTCGTGAAGGCAGCTAGCAAACATCAACACAACTATGAGGCTATCAACCCAGGTATATGTAAGAAATTATATGAGGCGAATTGCTCAGGAAAAGGTTATCTATGAACCTGTGGCGCCAAATAGTAAGAATAAGGATAAGGGTGTTTAATGTCACCTTGAACTTTTTTGCTCTACAAGCTAAGGATATACTTTCTCCATTTCGAACTTGTACTCTACAATTAATAATCCATTACTTTACTTTACTTTACTTTGTGGGATGCATTAAATTTCAATTTTATGATTTATATGCAAAATTTCTTAGTTTGAAGTTTCTTTGGCTAATTGGTTCATTGATTTTTTGATTAGTAGAGAAATGCGTGCATTATAAGATACAAATAGTTCTTATTTACAAGGTTGCAATAACCAATTAATGAAATATATGAAACTGTGGCATACATATTGTAAAAACATTGTCTGCATGATATGATATGATACTCTATGTACCCTGCAGTATCAGTGACAAATAAACCGTACTTATAATCCCCACATACCTGGTCCAAATGTTAAAAAGTCCATATAATACTTTTTACTCAAGGTTGCTAATTGGTTCATTGTTGATAAAAATGCCTGATAGATAACTTGTTTCTGCGTAGTGAGGTTGAGTTATCTTGTATTTTTGTTGATATTCTTGCTCATAAAATTGTTTCAGTTATTAATCTAAGCTTATAATGTCTTAGGTGTTTGTTAAGCTTTTCCCCCCCTGATATTTGGAAAGTGGTTGATTGCAACTTACACACTACTATAATTAAACTGTCACTTGGTTGATTGCATGTAGTGTTGGTGTTTATATGATTGCCACTTATGTGCTATAGTTACTTTTTCTATATTATTTTATTCTATGATAAATTAAATAGGACATTAGCATAAATTTTATATGGTTGGCCTGATTTCTCTACTGCATGTATCTATTATTAGTGTATTGGTGGATGGTGTTTCTTTTTTATTGTCTGTTGCTCGATTCTATTCTGCTCGTTGTATATCTTGTTCATTTGGCTTTGGTATCTCAGTCTAGGCTGCAACGATTGTGCTCCTGGTGCTCTGTCTTTTGATGTCCTCTTCTGATGGCCTGCTGGTTTGATGTGATGTTGTTTTGTTCTACTAAGTGGTGTTGATTGGTCTACTCCTGCTAATCTGCACTTTGCTGTCGTGTGATCTGCTGTCTTTTCTGCACATTGTTGCTGTTTTTCTTGAAGATTGAAGGCGACCCAAATGAGGAGTTATATGTAGGATGCGGTGTGGTTAGTTTGGATCAAAACTTTGTTAGACCAACGTTAACTTGGTTTGCCTTTGGTTATTTATTTTTTAATTTTTTAGTGGTTTTTGTAGTTTTGGGCTTGTAGGTTGTTGCAAGGCCCTGGGGTTTGATTGGTTGAGCTTGTACAAAAATTGGTTTGTTTTAGTTCATAATATATTTGGAGTTATTAAATTTATGATTTCCATAAAAA

mRNA sequence

ATGAATTATTCAAGTAAACTGATTCCTTTCCTTCACTTGCGCACTACACACATCACCTCGCCTCTCCCTCCTTCCTGCTCCTTGCGTCGCCACCCCGCCAGTCGTTTCCCTCTCATCGGCGACACTGGTTCGTTGTTGTTGCGTTGGTTCTGCTGCTGTTCCCCTCTCTCGTCTCTCCTCCATCTCGTCCCTCTTCCATCTCGTCCAAGCTTCGTGATGCCGCCGCCGATGGTGGCCGCTAAACCACCCTCATCTAGACGCCCTCTTCAATTGGTTGATCGGTGTTGATCGTTGTGTTCTTGTTCCTCTCCTCGACTCATCTCCCCTGCTTCACTCCTCTACCTCTCCTCTCCTCCGCTAGACTCACGGAGGGCCACCCCTCGTGGCTCTGCCGGAGCTGCTCCTGCTGCTATTCCGTTGATATTGTTGTTGTGTTATCTGTCTTATGGTTGTTGTTGTTGCTACTTCCCTGCCTCTCTATTTCTCTTATGGGAATCAGGCAGAGCAAAGTACTATTTTTAATGGGCAATAATATCCAGCTAGAGACTTTGGTTAGTGTAGATTTGAGGCAGTCGTGAAGGCAGCTAGCAAACATCAACACAACTATGAGGCTATCAACCCAGTCTAGGCTGCAACGATTGTGCTCCTGGTGCTCTGTCTTTTGATGTCCTCTTCTGATGGCCTGCTGGTTTGATGTGATGTTGTTTTGTTCTACTAAGTGGTGTTGATTGGTCTACTCCTGCTAATCTGCACTTTGCTGTCGTGTGATCTGCTGTCTTTTCTGCACATTGTTGCTGTTTTTCTTGAAGATTGAAGGCGACCCAAATGAGGAGTTATATGTAGGATGCGGTGTGGTTAGTTTGGATCAAAACTTTGTTAGACCAACGTTAACTTGGTTTGCCTTTGGTTATTTATTTTTTAATTTTTTAGTGGTTTTTGTAGTTTTGGGCTTGTAGGTTGTTGCAAGGCCCTGGGGTTTGATTGGTTGAGCTTGTACAAAAATTGGTTTGTTTTAGTTCATAATATATTTGGAGTTATTAAATTTATGATTTCCATAAAAA

Coding sequence (CDS)

ATGAATTATTCAAGTAAACTGATTCCTTTCCTTCACTTGCGCACTACACACATCACCTCGCCTCTCCCTCCTTCCTGCTCCTTGCGTCGCCACCCCGCCAGTCGTTTCCCTCTCATCGGCGACACTGGTTCGTTGTTGTTGCGTTGGTTCTGCTGCTGTTCCCCTCTCTCGTCTCTCCTCCATCTCGTCCCTCTTCCATCTCGTCCAAGCTTCGTGATGCCGCCGCCGATGGTGGCCGCTAAACCACCCTCATCTAGACGCCCTCTTCAATTGGTTGATCGGTGTTGA

Protein sequence

MNYSSKLIPFLHLRTTHITSPLPPSCSLRRHPASRFPLIGDTGSLLLRWFCCCSPLSSLLHLVPLPSRPSFVMPPPMVAAKPPSSRRPLQLVDRC
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo11213Spo11213gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo11213.1Spo11213.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11213.1.CDS.3Spo11213.1.CDS.3CDS
Spo11213.1.CDS.2Spo11213.1.CDS.2CDS
Spo11213.1.CDS.1Spo11213.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11213.1.utr3p.3Spo11213.1.utr3p.3three_prime_UTR
Spo11213.1.utr3p.2Spo11213.1.utr3p.2three_prime_UTR
Spo11213.1.utr3p.1Spo11213.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11213.1.exon.5Spo11213.1.exon.5exon
Spo11213.1.exon.4Spo11213.1.exon.4exon
Spo11213.1.exon.3Spo11213.1.exon.3exon
Spo11213.1.exon.2Spo11213.1.exon.2exon
Spo11213.1.exon.1Spo11213.1.exon.1exon


Homology
[Close]
BLAST of Spo11213.1 vs. NCBI nr
Match: gi|902225970|gb|KNA20247.1| (hypothetical protein SOVF_054270, partial [Spinacia oleracea])

HSP 1 Score: 60.8 bits (146), Expect = 1.400e-6
Identity = 39/65 (60.00%), Postives = 40/65 (61.54%), Query Frame = 1 

		  

Query: 27 SLRRHPASRFPLIGDTGSLLLRWFCCCSPLSSLLHLVPLPSRPSFVMPPPMVAAKPPSSR 86
          S RR  AS F L GD  S      CCC   S+   LV   SRPSFVMPPPMVAAKPPSSR
Sbjct: 2  SPRRRAASHFHLAGDADSAAEDVRCCCVD-SAAAPLVSPSSRPSFVMPPPMVAAKPPSSR 61

Query: 87 RPLQL 92
            LQL
Sbjct: 62 PHLQL 65
[Close]
BLAST of Spo11213.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RN32_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_054270 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.000e-6
Identity = 39/65 (60.00%), Postives = 40/65 (61.54%), Query Frame = 1 

		  

Query: 27 SLRRHPASRFPLIGDTGSLLLRWFCCCSPLSSLLHLVPLPSRPSFVMPPPMVAAKPPSSR 86
          S RR  AS F L GD  S      CCC   S+   LV   SRPSFVMPPPMVAAKPPSSR
Sbjct: 2  SPRRRAASHFHLAGDADSAAEDVRCCCVD-SAAAPLVSPSSRPSFVMPPPMVAAKPPSSR 61

Query: 87 RPLQL 92
            LQL
Sbjct: 62 PHLQL 65
The following BLAST results are available for this feature:
BLAST of Spo11213.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902225970|gb|KNA20247.1|1.4e-660.0hypothetical protein SOVF_0542... [more]
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BLAST of Spo11213.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RN32_SPIOL1.0e-660.0Uncharacterized protein (Fragm... [more]
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BLAST of Spo11213.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11213.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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