Spo11059.1 (mRNA)

Overview
NameSpo11059.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00886 : 137315 .. 139526 (-)
Sequence length1011
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCTCCTCACAATCTCTTTGCCTCACTCTCTCTCTTCAAAATACCTCGCCCATTCCCTCTCCTTGCCGCACATATTGAGTGGTCGCCAGAATTCATGTCGCCGCCCATACTCTCTCCTCCTAACCGACTCTCTAGGCGAGTCAGTCCGCCTACGAATTTTCGTCTGTCCTATCTTTAAAATCGCCTGCGGCGACGACGACAATGACGAGGTCAACAATAAAGCGATGACGATGTAATTCTTTGATCTCTCTCCTTCATTATCCTTCATCTCCTCCATTTTCTTTATGATTTCAAAGTTGAATCGCATTTTCTAGGGGTAGGGTTAGGGTTTGTTGCAATTAGTAGTATCCAATTGAGGTAAATAGTACTCCAGAAAGTGTTTTTTGACTGATTTTGTTTGATATTGTTATTTTTGTTCGTGAATCATTGATGTCGTTTGTCTAGCCGCGGCGGAGGGAACTGGTGGCGGTGGCTGCGACGAGTGCGAGGAAGGTGTGATAAACAGATCGAATATATGAATCTATCTACTTCATCTCTCTGTTCGATTTTCCGCGTTTTGATCCTTTTTATTGTGATTAAACTTGACTTTGAGTGGAAATCGAACTGGATTAATGATGAATTGTCGATGATTATGTTTCCCTTTTCGTTCTTACGACTAAAGCTTGATTGATGTAAAAATGGTGGAAGTTTTCCTCTGACACATTCAACTAAAGAAAATGTATTAATTATTGAGATTGAAAGTAGAAAGTGTTTTAATTATTGAGATTTTTTGCCTAGATTCTTTTAGTTAATAATAATTTCCATTTAGTTAATAATAATATCCATTTAGTTAATAATTATTTCATTTTAGTTCATCTTTTAGTTAATAATAATTTCCATTTAGTTAATAATTATTTCGTTTTAGTTAAGAACTATTTCGTTTTAGTTAAGAACTAGATGCTCATCTACTCTATCTTATCCGAATGTTTTCTGTTGTTTGTGTTCTTGTCCAGTGTTTTTTTTGGACATTTTAGTTGAGGTTTTTCCATTGATTGCTGATTAATTTTCCTATTGAGGTTTTTCTGGAATGCTTTAATGTTTTGGTAAATTCTCTCATTTGCGACTTGATTTTGTATATTTTGTGTATTTTTGTTCATGAGATCGATGTTGGAGTAACTGCTGCTGCTGTTGTTTTCGTTCATTATATGTTTGATAAATTTGTGATGTCCTGCTACTTGATTGTACTAGCTGAGAAGATTTTGCTGCGAGTATTTGTTTGTTTGTCTGAAATCTACTTCAATAGAGTAGATTTTAGGATTTGGAATATCATATGAGGTAGTTTCAAGTACTTTCAAGATTCCATAAAACTGTGTTGCTTAGTCTAATTTTGATTGCGGGAATGAATTGAGGTTCTCTAACCATGTAGTTTGTTGCTGGTGCTTTGTTGTTGCTAGGCAGCGTGGGGAGGGCTGGTGCTTTGTTGTTGCTGGGCAGCGTGGGGAGGACTGTGGCAGGGCAGGGCTGCAAGATGGCAACATAAGGATACTGCTCAAAGTTGACAGCATCATGCAAGGAAGAAGCTACCCATATCATGATAGTGCATGTACTTGTAAGGGCATGCCTGGTTTTCATTTCAAGCCACCATGGTTAATCTTTTTTATCACCATGCCCCCACATTACATATCTCATTCCACCAAGATTGAAGTTCAGGATCTCTTTCTACTAGGCTGTCTGTTGGATAGTAGAACCAACAATAATCATTCACCCATGTCTCAATTGCAAACCAGATTTCAAGCTCGTCAACTGCAAAGGGGTAATCCTTCATCAACAGCTTCAGGCCATGCGGATGGCTGGAATCCTCAACTACCATCCCTCTAGAATGTTGCAAAAGACATATATGATTAGAAATGTAAAATTGCAGTAAAAGTTGCAGTGCGTGTTGTGGCTTAATGATACATGTAAATGAAACTACCTATTGGGAAGATCAGTAGGAAGTGCTTCATCAGTGAAAGCCCAACTTTTGTATACAAATGATGACAATTCCAAGCAAATTTTTCCATGTTTCACCAGCATTTAATGAGGATTTGCTTAGCCAATGTAATGATTAAATTTTATGTTGTTTTAGTTAAGTGTAACTTTGTTTTAGTTAAGTGTAACTTTGTTTTAGTTAAGAACAGTTTCATTTTAGTTAAGGGTTAAGAATTTTTCAAGTTGCGGTTTACCAGAAAAAAAA

mRNA sequence

CTCTCCTCACAATCTCTTTGCCTCACTCTCTCTCTTCAAAATACCTCGCCCATTCCCTCTCCTTGCCGCACATATTGAGTGGTCGCCAGAATTCATGTCGCCGCCCATACTCTCTCCTCCTAACCGACTCTCTAGGCGAGTCAGTCCGCCTACGAATTTTCGTCTGTCCTATCTTTAAAATCGCCTGCGGCGACGACGACAATGACGAGGTCAACAATAAAGCGATGACGATGCAGCGTGGGGAGGGCTGGTGCTTTGTTGTTGCTGGGCAGCGTGGGGAGGACTGTGGCAGGGCAGGGCTGCAAGATGGCAACATAAGGATACTGCTCAAAGTTGACAGCATCATGCAAGGAAGAAGCTACCCATATCATGATAGTGCATGTACTTGTAAGGGCATGCCTGGTTTTCATTTCAAGCCACCATGGTTAATCTTTTTTATCACCATGCCCCCACATTACATATCTCATTCCACCAAGATTGAAGTTCAGGATCTCTTTCTACTAGGCTGTCTGTTGGATAGTAGAACCAACAATAATCATTCACCCATGTCTCAATTGCAAACCAGATTTCAAGCTCGTCAACTGCAAAGGGGTAATCCTTCATCAACAGCTTCAGGCCATGCGGATGGCTGGAATCCTCAACTACCATCCCTCTAGAATGTTGCAAAAGACATATATGATTAGAAATGTAAAATTGCAGTAAAAGTTGCAGTGCGTGTTGTGGCTTAATGATACATGTAAATGAAACTACCTATTGGGAAGATCAGTAGGAAGTGCTTCATCAGTGAAAGCCCAACTTTTGTATACAAATGATGACAATTCCAAGCAAATTTTTCCATGTTTCACCAGCATTTAATGAGGATTTGCTTAGCCAATGTAATGATTAAATTTTATGTTGTTTTAGTTAAGTGTAACTTTGTTTTAGTTAAGTGTAACTTTGTTTTAGTTAAGAACAGTTTCATTTTAGTTAAGGGTTAAGAATTTTTCAAGTTGCGGTTTACCAGAAAAAAAA

Coding sequence (CDS)

ATGACGATGCAGCGTGGGGAGGGCTGGTGCTTTGTTGTTGCTGGGCAGCGTGGGGAGGACTGTGGCAGGGCAGGGCTGCAAGATGGCAACATAAGGATACTGCTCAAAGTTGACAGCATCATGCAAGGAAGAAGCTACCCATATCATGATAGTGCATGTACTTGTAAGGGCATGCCTGGTTTTCATTTCAAGCCACCATGGTTAATCTTTTTTATCACCATGCCCCCACATTACATATCTCATTCCACCAAGATTGAAGTTCAGGATCTCTTTCTACTAGGCTGTCTGTTGGATAGTAGAACCAACAATAATCATTCACCCATGTCTCAATTGCAAACCAGATTTCAAGCTCGTCAACTGCAAAGGGGTAATCCTTCATCAACAGCTTCAGGCCATGCGGATGGCTGGAATCCTCAACTACCATCCCTCTAG

Protein sequence

MTMQRGEGWCFVVAGQRGEDCGRAGLQDGNIRILLKVDSIMQGRSYPYHDSACTCKGMPGFHFKPPWLIFFITMPPHYISHSTKIEVQDLFLLGCLLDSRTNNNHSPMSQLQTRFQARQLQRGNPSSTASGHADGWNPQLPSL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo11059Spo11059gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo11059.1Spo11059.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11059.1.utr5p.1Spo11059.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11059.1.CDS.2Spo11059.1.CDS.2CDS
Spo11059.1.CDS.1Spo11059.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11059.1.utr3p.1Spo11059.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo11059.1.exon.2Spo11059.1.exon.2exon
Spo11059.1.exon.1Spo11059.1.exon.1exon


Homology
[Close]
BLAST of Spo11059.1 vs. NCBI nr
Match: gi|902208522|gb|KNA15969.1| (hypothetical protein SOVF_093490 isoform B [Spinacia oleracea])

HSP 1 Score: 310.1 bits (793), Expect = 2.100e-81
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

		  

Query: 1   MTMQRGEGWCFVVAGQRGEDCGRAGLQDGNIRILLKVDSIMQGRSYPYHDSACTCKGMPG 60
           MTMQRGEGWCFVVAGQRGEDCGRAGLQDGNIRILLKVDSIMQGRSYPYHDSACTCKGMPG
Sbjct: 1   MTMQRGEGWCFVVAGQRGEDCGRAGLQDGNIRILLKVDSIMQGRSYPYHDSACTCKGMPG 60

Query: 61  FHFKPPWLIFFITMPPHYISHSTKIEVQDLFLLGCLLDSRTNNNHSPMSQLQTRFQARQL 120
           FHFKPPWLIFFITMPPHYISHSTKIEVQDLFLLGCLLDSRTNNNHSPMSQLQTRFQARQL
Sbjct: 61  FHFKPPWLIFFITMPPHYISHSTKIEVQDLFLLGCLLDSRTNNNHSPMSQLQTRFQARQL 120

Query: 121 QRGNPSSTASGHADGWNPQLPSL 144
           QRGNPSSTASGHADGWNPQLPSL
Sbjct: 121 QRGNPSSTASGHADGWNPQLPSL 143
[Close]
BLAST of Spo11059.1 vs. NCBI nr
Match: gi|902208521|gb|KNA15968.1| (hypothetical protein SOVF_093490 isoform A [Spinacia oleracea])

HSP 1 Score: 303.9 bits (777), Expect = 1.500e-79
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

		  

Query: 4   QRGEGWCFVVAGQRGEDCGRAGLQDGNIRILLKVDSIMQGRSYPYHDSACTCKGMPGFHF 63
           QRGEGWCFVVAGQRGEDCGRAGLQDGNIRILLKVDSIMQGRSYPYHDSACTCKGMPGFHF
Sbjct: 20  QRGEGWCFVVAGQRGEDCGRAGLQDGNIRILLKVDSIMQGRSYPYHDSACTCKGMPGFHF 79

Query: 64  KPPWLIFFITMPPHYISHSTKIEVQDLFLLGCLLDSRTNNNHSPMSQLQTRFQARQLQRG 123
           KPPWLIFFITMPPHYISHSTKIEVQDLFLLGCLLDSRTNNNHSPMSQLQTRFQARQLQRG
Sbjct: 80  KPPWLIFFITMPPHYISHSTKIEVQDLFLLGCLLDSRTNNNHSPMSQLQTRFQARQLQRG 139

Query: 124 NPSSTASGHADGWNPQLPSL 144
           NPSSTASGHADGWNPQLPSL
Sbjct: 140 NPSSTASGHADGWNPQLPSL 159
[Close]
BLAST of Spo11059.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RAD3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_093490 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 1.400e-81
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

		  

Query: 1   MTMQRGEGWCFVVAGQRGEDCGRAGLQDGNIRILLKVDSIMQGRSYPYHDSACTCKGMPG 60
           MTMQRGEGWCFVVAGQRGEDCGRAGLQDGNIRILLKVDSIMQGRSYPYHDSACTCKGMPG
Sbjct: 1   MTMQRGEGWCFVVAGQRGEDCGRAGLQDGNIRILLKVDSIMQGRSYPYHDSACTCKGMPG 60

Query: 61  FHFKPPWLIFFITMPPHYISHSTKIEVQDLFLLGCLLDSRTNNNHSPMSQLQTRFQARQL 120
           FHFKPPWLIFFITMPPHYISHSTKIEVQDLFLLGCLLDSRTNNNHSPMSQLQTRFQARQL
Sbjct: 61  FHFKPPWLIFFITMPPHYISHSTKIEVQDLFLLGCLLDSRTNNNHSPMSQLQTRFQARQL 120

Query: 121 QRGNPSSTASGHADGWNPQLPSL 144
           QRGNPSSTASGHADGWNPQLPSL
Sbjct: 121 QRGNPSSTASGHADGWNPQLPSL 143
[Close]
BLAST of Spo11059.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R8T6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_093490 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.000e-79
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 1 

		  

Query: 4   QRGEGWCFVVAGQRGEDCGRAGLQDGNIRILLKVDSIMQGRSYPYHDSACTCKGMPGFHF 63
           QRGEGWCFVVAGQRGEDCGRAGLQDGNIRILLKVDSIMQGRSYPYHDSACTCKGMPGFHF
Sbjct: 20  QRGEGWCFVVAGQRGEDCGRAGLQDGNIRILLKVDSIMQGRSYPYHDSACTCKGMPGFHF 79

Query: 64  KPPWLIFFITMPPHYISHSTKIEVQDLFLLGCLLDSRTNNNHSPMSQLQTRFQARQLQRG 123
           KPPWLIFFITMPPHYISHSTKIEVQDLFLLGCLLDSRTNNNHSPMSQLQTRFQARQLQRG
Sbjct: 80  KPPWLIFFITMPPHYISHSTKIEVQDLFLLGCLLDSRTNNNHSPMSQLQTRFQARQLQRG 139

Query: 124 NPSSTASGHADGWNPQLPSL 144
           NPSSTASGHADGWNPQLPSL
Sbjct: 140 NPSSTASGHADGWNPQLPSL 159
The following BLAST results are available for this feature:
BLAST of Spo11059.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902208522|gb|KNA15969.1|2.1e-81100.hypothetical protein SOVF_0934... [more]
gi|902208521|gb|KNA15968.1|1.5e-79100.hypothetical protein SOVF_0934... [more]
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BLAST of Spo11059.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RAD3_SPIOL1.4e-81100.Uncharacterized protein OS=Spi... [more]
A0A0K9R8T6_SPIOL1.0e-79100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo11059.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo11059.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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