Spo10493.1 (mRNA) | SpinachBase

Overview


Name	Spo10493.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L29
Location	SpoScf_03043 : 31616 .. 35087 (-)
Sequence length	1197

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTGAACAAGAAAAAGAAAGAGTGGGGGAAGCAAGAGTGAGAGAGGATAAACAAAAACCTTATCTAGAGCTCCCAATTCAAAGCAGAGTAACGGAAGAAGCAGCGCAAAGCAAAATTGAAAGAAAATGTTGGCAATCCACTCTCTCTCCTCAACCCCTTGCTCTTCTGGCCTTACATCCCCACCAAAATCCACACTTCTTACAAAATCCTCATTTCATGGCCTTCGTCTTCCCTCCGTCAACCTATCTTCTTCCCTTCGCCTCCGAGTACAGACGCCGCCGTCTTCGGTGGTTGTGATGGTGAAGAAAGAAGACGAGTTGAAGGAATTAAGGACCAAAACTAATGAACAACTCAATGAAGAGATTCTGCAGCTTAAAGGTGAGCTCTTTATGCTCCGTCTTCAACGGTCTGCCCGTGAGAATTTCAAGCCCAGCGATTTTGGTCGTATGCGCAAAAGGGTAACTTTTTATTTCTCCATTTTATCTTCTTAATTGGCTGTTAATTTTGATTTTTTTTCATCTGGGTTTGATTATGTGATTGGAATGATATTTATTTGAGGTAATTAGGTAAATGTTGTTATGTTTAATACGAAGTACTTTCTTTGTGGGGATTTAATTGTCACATTACTTGTTCAAATTACACAATCAACATGAATATGGGAGTATGTGAAACCAACAATTGGATAATATCATAATGCTGAGAAGTGATGGGTGATGATAAAGGTCGCAAGTTGCGACAATATTTAGTTGTCGCAATCTTACGTGTCGCAGTTTAATTGGTACATATAGGCGACACGTAGGCTATGAGTCATAATAATATTTTTACTATCAATGCAATATTTTTACTATGAAAATATGTAAATAAGGTAGTCGATATAAATAAGGAAACAAATTAGAATATTAAGATTTTCCTAGCTTTTTTTGAAACATTTAAAGTAGGATATATAAATTAAATATTTTAGTTTCCAATTTAATCATGACACATAAGCATGCCATGTCATCATTGTGACACGGCTTAAAGGTCGCATGTTGCGACCTTTATCATTTTCGGAGAAGTGATAACATTGTCTTATGTTGGATGGTTTTAGAATAGAGCATGAAATCCTGGTCTTCTAGGCCAAGGGTTTATCTGGTAGCTAAGATGTGAGTTGGCCTGTTCGTGGTTGTGGCTAAAGATGGGATTATCCACTAATTTTTTTACCTGAGAATGGACACAATTAGGCTAATGAAGTTCCTCCTTCATATTGCAAGGTTTTACACAACAGGAAGAGGACACTTTTGATCAATAATTCTAACATTACTAAGATAGATCCTGTTATAAGGTTAAAAAATATTCCCTGTCTTGTACTCTTGGGATTATCCACTAATTTTTTTACCCGAGAATGGACACTATTAGGCCATTGAAGTCCCCCCTTCATATTGCAAGGTTTTATCCAGCAGGAAGAGGACACTTTTGATCAATAATTCTAACATTACTAAGATAGATCCTGTTATAAGGTTAACAAAACATTCCCCGTCTTGTACTGTTATTGCAAGGGGCGAATGAGCGGTATGAGATATTGGTAATTGCAGGATTACCAGGTCTGATTTTGTTGCTGGAGTTTTGGTCTGAAAAGTAGTCACTGGCATATTAGTTTAATTCTTTTAGTGAAGTTTTGAGCTCAAAAAACTACTTATGAGTTACGGCTCTAGGAGCACTTTATGTTTCGCTTGGAGGGTTATGATCTTTGGGCATGGAGAAAGTACTGCTTTCGGAAAATTGGGCCTTCTGATCGGTTTTAGTTGTGATGAATGTGGATTTGGTGTAGCTCTGAAAACTTAGTATATGGAGTACTTAGCAGTAGAAGATAGGTGCATAGGTGCAAACTGCTGTGATATCAAACACATTTTTAAGGTTTTTGCCGTTTATGTTGTGACTTGTGAGTCTTGTGAGGGGGTTTTATCTGGCCTCTCATGTTGAGAAATTTAATATCCATTCAAACCAATTTAATCATGTGACTATTTGAAAATGCTCTTTGTTGGTCGTTTTCATTATCTCGATAAATAAATATATCTTGGGTTGTTGTATATGTGTTTCCCCTTTAATGGGTATATTTTGTCCTTTTCCCTTTTATGCTTGGAAAGGTAACGATCAATAGTATTTCAACCAGTGCTAGCCGCCCCTGTACATGGTTATGGAGTTACTTCCTTCCCCTTTTAATACATGAATTATTTGACATATTGGTTCTCATTATGTAAGATATTGGGATTTCATTGTTTTCTTAACAATACAGTTTCTCTGGTTTTACATTGGTTGATGAAATGCACACTTGTACGTTTGGGCCACACTATACTCTGACTTAGAAAGATCTATGATGTGGGTTGTAAACAATCCTCTTTTAGGGACAATCTTAAGTCTTTGGTCACAATTGGTGACCTAGCTAGTCCCTCAAGGTCCTCAACATAGCTAATTAGTTAGACATGATAGCCTCCATATCTGTTCATGTAATTAGGTTCTTAAACTTGATGACCCTGATTGATAGCTTTCACTTATGTACTTTGCGTTGCTGCTGCTGTCATTGGATTTCTGTACTAATAAAATAATACAATCCTGATTGACACTCCTTAACACCAGTATTAATCTATGTGATTTAAGCATAACTTCTGTATTACTGATGGTAAATGTCTTGTTGAACTTATATTGAGCCCTGCCCTATATGAATAAGTATTAATAAACTAATTTTCTCAACACTAGGTTGCACGCATGCTTACCGTGAAAAGGGAGAGGGAGATAGAACAAGGAGTTGGCAAGAGGTTATCGAGGAAACTTGACAAGGCGTGGAAAAGAAGCATTGTTGTAAGGCCACCTCCTTCGCTGAAGAAGTTACAAGAAAAGGCCACTGCAGAGGCTGAGGCTGAGAAAGCGTAATGAGCTTAATATCTGTTAGTAAACATGTATCCATACAGAGCAGTATTTGTAGTTATTCATGGTAGGATCTCAATCAACTTTTTTGTATCAGACAATTCATTTGTAAATTTCGGTTCTTCCCTTGTTTGATCTTTCCTCTTACATGCTGTTATCGAAGTCTCATTGGTCATTACTTTGGATTAGGGCTAAGTAAACTCTATTTTTTGTTGGCTTTTTGCATGTTGCCATCAGAATTCAGAAATAGTCTGACAGACACTGAGACAGTAGAGAGTTCATTCTGTTCCTGTCATTCTCTGCCTTGAAGAATCATCCACGCGTAACATTGTCAACTTTGTGATCATCTTTCTGCAATTTTTTTAAATATGAAGATGATGTGAATTGTATCTTTATGCAATATTATTTGTTTAATGTCTTTTTGGCCTCTCTGTAAGACGTTACTTACTTCATGGAGATGCTGCTTGATTTTGTGCATTCAAATTTTCCTGGAAGATTTCTCTAATATCTGCAGCTTTGAACTCTGAAATTAGTCAACTACGAGTACTATAAACACCACCTAATGTAAAC

mRNA sequence

AACTGAACAAGAAAAAGAAAGAGTGGGGGAAGCAAGAGTGAGAGAGGATAAACAAAAACCTTATCTAGAGCTCCCAATTCAAAGCAGAGTAACGGAAGAAGCAGCGCAAAGCAAAATTGAAAGAAAATGTTGGCAATCCACTCTCTCTCCTCAACCCCTTGCTCTTCTGGCCTTACATCCCCACCAAAATCCACACTTCTTACAAAATCCTCATTTCATGGCCTTCGTCTTCCCTCCGTCAACCTATCTTCTTCCCTTCGCCTCCGAGTACAGACGCCGCCGTCTTCGGTGGTTGTGATGGTGAAGAAAGAAGACGAGTTGAAGGAATTAAGGACCAAAACTAATGAACAACTCAATGAAGAGATTCTGCAGCTTAAAGGTGAGCTCTTTATGCTCCGTCTTCAACGGTCTGCCCGTGAGAATTTCAAGCCCAGCGATTTTGGTCGTATGCGCAAAAGGGTTGCACGCATGCTTACCGTGAAAAGGGAGAGGGAGATAGAACAAGGAGTTGGCAAGAGGTTATCGAGGAAACTTGACAAGGCGTGGAAAAGAAGCATTGTTGTAAGGCCACCTCCTTCGCTGAAGAAGTTACAAGAAAAGGCCACTGCAGAGGCTGAGGCTGAGAAAGCGTAATGAGCTTAATATCTGTTAGTAAACATGTATCCATACAGAGCAGTATTTGTAGTTATTCATGGTAGGATCTCAATCAACTTTTTTGTATCAGACAATTCATTTGTAAATTTCGGTTCTTCCCTTGTTTGATCTTTCCTCTTACATGCTGTTATCGAAGTCTCATTGGTCATTACTTTGGATTAGGGCTAAGTAAACTCTATTTTTTGTTGGCTTTTTGCATGTTGCCATCAGAATTCAGAAATAGTCTGACAGACACTGAGACAGTAGAGAGTTCATTCTGTTCCTGTCATTCTCTGCCTTGAAGAATCATCCACGCGTAACATTGTCAACTTTGTGATCATCTTTCTGCAATTTTTTTAAATATGAAGATGATGTGAATTGTATCTTTATGCAATATTATTTGTTTAATGTCTTTTTGGCCTCTCTGTAAGACGTTACTTACTTCATGGAGATGCTGCTTGATTTTGTGCATTCAAATTTTCCTGGAAGATTTCTCTAATATCTGCAGCTTTGAACTCTGAAATTAGTCAACTACGAGTACTATAAACACCACCTAATGTAAAC

Coding sequence (CDS)

ATGTTGGCAATCCACTCTCTCTCCTCAACCCCTTGCTCTTCTGGCCTTACATCCCCACCAAAATCCACACTTCTTACAAAATCCTCATTTCATGGCCTTCGTCTTCCCTCCGTCAACCTATCTTCTTCCCTTCGCCTCCGAGTACAGACGCCGCCGTCTTCGGTGGTTGTGATGGTGAAGAAAGAAGACGAGTTGAAGGAATTAAGGACCAAAACTAATGAACAACTCAATGAAGAGATTCTGCAGCTTAAAGGTGAGCTCTTTATGCTCCGTCTTCAACGGTCTGCCCGTGAGAATTTCAAGCCCAGCGATTTTGGTCGTATGCGCAAAAGGGTTGCACGCATGCTTACCGTGAAAAGGGAGAGGGAGATAGAACAAGGAGTTGGCAAGAGGTTATCGAGGAAACTTGACAAGGCGTGGAAAAGAAGCATTGTTGTAAGGCCACCTCCTTCGCTGAAGAAGTTACAAGAAAAGGCCACTGCAGAGGCTGAGGCTGAGAAAGCGTAA

Protein sequence

MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVKKEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo10493	Spo10493	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo10493.1	Spo10493.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10493.1.utr5p.1	Spo10493.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10493.1.CDS.2	Spo10493.1.CDS.2	CDS
Spo10493.1.CDS.1	Spo10493.1.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10493.1.utr3p.1	Spo10493.1.utr3p.1	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10493.1.exon.2	Spo10493.1.exon.2	exon
Spo10493.1.exon.1	Spo10493.1.exon.1	exon

Homology

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BLAST of Spo10493.1 vs. NCBI nr
Match: gi|902206968|gb|KNA15596.1| (hypothetical protein SOVF_096810 [Spinacia oleracea])

HSP 1 Score: 306.2 bits (783), Expect = 3.500e-80
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1


		  
Query: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60
           MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK
Sbjct: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60

Query: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120
           KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR
Sbjct: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120

Query: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA
Sbjct: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 168

[Close]

BLAST of Spo10493.1 vs. NCBI nr
Match: gi|731338849|ref|XP_010680537.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 241.1 bits (614), Expect = 1.400e-60
Identity = 134/164 (81.71%), Postives = 144/164 (87.80%), Query Frame = 1


		  
Query: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60
           MLA HSLSS P S  LT PPKSTLL KSSFHGLRLPS N +  LRLR Q  PS+VV+M K
Sbjct: 1   MLASHSLSSIPSSPSLTFPPKSTLLAKSSFHGLRLPSFNPTPILRLRAQASPSTVVMMAK 60

Query: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120
           +E+ELKE+RTKTNE+LNEEILQLKGELFMLRLQRSARENFKPSDF RMR RVARMLTVKR
Sbjct: 61  REEELKEIRTKTNEELNEEILQLKGELFMLRLQRSARENFKPSDFSRMRSRVARMLTVKR 120

Query: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQ-EKATAEA 164
           EREIEQGVGKRLSRKLDK WKRSIV++PPPSLK LQ EKA+AEA
Sbjct: 121 EREIEQGVGKRLSRKLDKQWKRSIVIKPPPSLKNLQVEKASAEA 164

[Close]

BLAST of Spo10493.1 vs. NCBI nr
Match: gi|359485888|ref|XP_003633349.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Vitis vinifera])

HSP 1 Score: 181.4 bits (459), Expect = 1.300e-42
Identity = 105/156 (67.31%), Postives = 125/156 (80.13%), Query Frame = 1


		  
Query: 14  SGLTSPPKST-LLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVKKEDELKELRTKT 73
           S L  PPK+T    KSSF+G+R+P+ N  S    R  +  SSVV+M K+E+ELKE+R KT
Sbjct: 10  SSLKIPPKTTSTFPKSSFNGIRIPTPNKPS---FRSPSSSSSVVMMAKREEELKEIRAKT 69

Query: 74  NEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRL 133
            E+LNEEI+ LKGEL MLRLQ+S R  FKPS+FGRMRKRVARMLTVKREREIE+G+ KRL
Sbjct: 70  TEELNEEIVDLKGELLMLRLQKSVRNEFKPSEFGRMRKRVARMLTVKREREIEEGINKRL 129

Query: 134 SRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           SRKLD+ WK+SIVVRPPPSLKKLQE+  A AEAEK+
Sbjct: 130 SRKLDRQWKKSIVVRPPPSLKKLQEEEAA-AEAEKS 161

[Close]

BLAST of Spo10493.1 vs. NCBI nr
Match: gi|731434995|ref|XP_010645220.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Vitis vinifera])

HSP 1 Score: 178.3 bits (451), Expect = 1.100e-41
Identity = 104/156 (66.67%), Postives = 124/156 (79.49%), Query Frame = 1


		  
Query: 14  SGLTSPPKST-LLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVKKEDELKELRTKT 73
           S L  PPK+T    KSSF+G+R+P+    S    R  +  SSVV+M K+E+ELKE+R KT
Sbjct: 37  SSLKIPPKTTSTFPKSSFNGIRIPTPYKPS---FRSPSSSSSVVMMAKREEELKEIRAKT 96

Query: 74  NEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRL 133
            E+LNEEI+ LKGEL MLRLQ+S R  FKPS+FGRMRKRVARMLTVKREREIE+G+ KRL
Sbjct: 97  TEELNEEIVDLKGELLMLRLQKSVRNEFKPSEFGRMRKRVARMLTVKREREIEEGINKRL 156

Query: 134 SRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           SRKLD+ WK+SIVVRPPPSLKKLQE+  A AEAEK+
Sbjct: 157 SRKLDRQWKKSIVVRPPPSLKKLQEEEAA-AEAEKS 188

[Close]

BLAST of Spo10493.1 vs. NCBI nr
Match: gi|565361224|ref|XP_006347357.1| (PREDICTED: 50S ribosomal protein L29, chloroplastic-like [Solanum tuberosum])

HSP 1 Score: 175.6 bits (444), Expect = 7.100e-41
Identity = 99/168 (58.93%), Postives = 127/168 (75.60%), Query Frame = 1


		  
Query: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60
           M+++   S +P  SG+T   K  L +KSSFHG+R+P +  + ++     + PS VV M K
Sbjct: 1   MMSLSIASPSPSPSGVTFTSKINL-SKSSFHGIRIPKIIQARAVNAPPPSCPSLVVKMAK 60

Query: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120
           +E+ELKE+RTKT E+L EEI+ LKGELFMLRLQRSAR  FK S+F RMRKR+ARMLTVKR
Sbjct: 61  REEELKEIRTKTTEELQEEIVDLKGELFMLRLQRSARNEFKSSEFLRMRKRIARMLTVKR 120

Query: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           ERE+E+G+ KR+SRKLD+ WK+SIV RPPPSLKKL+E+  AE   E A
Sbjct: 121 EREVEEGINKRISRKLDRKWKKSIVPRPPPSLKKLREEEAAEEAKESA 167

[Close]

BLAST of Spo10493.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R7W8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_096810 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 2.400e-80
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 1


		  
Query: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60
           MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK
Sbjct: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60

Query: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120
           KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR
Sbjct: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120

Query: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA
Sbjct: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 168

[Close]

BLAST of Spo10493.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C4P8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g135040 PE=3 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 9.600e-61
Identity = 134/164 (81.71%), Postives = 144/164 (87.80%), Query Frame = 1


		  
Query: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60
           MLA HSLSS P S  LT PPKSTLL KSSFHGLRLPS N +  LRLR Q  PS+VV+M K
Sbjct: 1   MLASHSLSSIPSSPSLTFPPKSTLLAKSSFHGLRLPSFNPTPILRLRAQASPSTVVMMAK 60

Query: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120
           +E+ELKE+RTKTNE+LNEEILQLKGELFMLRLQRSARENFKPSDF RMR RVARMLTVKR
Sbjct: 61  REEELKEIRTKTNEELNEEILQLKGELFMLRLQRSARENFKPSDFSRMRSRVARMLTVKR 120

Query: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQ-EKATAEA 164
           EREIEQGVGKRLSRKLDK WKRSIV++PPPSLK LQ EKA+AEA
Sbjct: 121 EREIEQGVGKRLSRKLDKQWKRSIVIKPPPSLKNLQVEKASAEA 164

[Close]

BLAST of Spo10493.1 vs. UniProtKB/TrEMBL
Match: F6I6Q6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0121g00010 PE=3 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 9.000e-43
Identity = 105/156 (67.31%), Postives = 125/156 (80.13%), Query Frame = 1


		  
Query: 14  SGLTSPPKST-LLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVKKEDELKELRTKT 73
           S L  PPK+T    KSSF+G+R+P+ N  S    R  +  SSVV+M K+E+ELKE+R KT
Sbjct: 10  SSLKIPPKTTSTFPKSSFNGIRIPTPNKPS---FRSPSSSSSVVMMAKREEELKEIRAKT 69

Query: 74  NEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRL 133
            E+LNEEI+ LKGEL MLRLQ+S R  FKPS+FGRMRKRVARMLTVKREREIE+G+ KRL
Sbjct: 70  TEELNEEIVDLKGELLMLRLQKSVRNEFKPSEFGRMRKRVARMLTVKREREIEEGINKRL 129

Query: 134 SRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           SRKLD+ WK+SIVVRPPPSLKKLQE+  A AEAEK+
Sbjct: 130 SRKLDRQWKKSIVVRPPPSLKKLQEEEAA-AEAEKS 161

[Close]

BLAST of Spo10493.1 vs. UniProtKB/TrEMBL
Match: F6HWM0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0141g00200 PE=3 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 7.600e-42
Identity = 104/156 (66.67%), Postives = 124/156 (79.49%), Query Frame = 1


		  
Query: 14  SGLTSPPKST-LLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVKKEDELKELRTKT 73
           S L  PPK+T    KSSF+G+R+P+    S    R  +  SSVV+M K+E+ELKE+R KT
Sbjct: 10  SSLKIPPKTTSTFPKSSFNGIRIPTPYKPS---FRSPSSSSSVVMMAKREEELKEIRAKT 69

Query: 74  NEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRL 133
            E+LNEEI+ LKGEL MLRLQ+S R  FKPS+FGRMRKRVARMLTVKREREIE+G+ KRL
Sbjct: 70  TEELNEEIVDLKGELLMLRLQKSVRNEFKPSEFGRMRKRVARMLTVKREREIEEGINKRL 129

Query: 134 SRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           SRKLD+ WK+SIVVRPPPSLKKLQE+  A AEAEK+
Sbjct: 130 SRKLDRQWKKSIVVRPPPSLKKLQEEEAA-AEAEKS 161

[Close]

BLAST of Spo10493.1 vs. UniProtKB/TrEMBL
Match: M1CK76_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400026946 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.000e-41
Identity = 99/168 (58.93%), Postives = 127/168 (75.60%), Query Frame = 1


		  
Query: 1   MLAIHSLSSTPCSSGLTSPPKSTLLTKSSFHGLRLPSVNLSSSLRLRVQTPPSSVVVMVK 60
           M+++   S +P  SG+T   K  L +KSSFHG+R+P +  + ++     + PS VV M K
Sbjct: 1   MMSLSIASPSPSPSGVTFTSKINL-SKSSFHGIRIPKIIQARAVNAPPPSCPSLVVKMAK 60

Query: 61  KEDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKR 120
           +E+ELKE+RTKT E+L EEI+ LKGELFMLRLQRSAR  FK S+F RMRKR+ARMLTVKR
Sbjct: 61  REEELKEIRTKTTEELQEEIVDLKGELFMLRLQRSARNEFKSSEFLRMRKRIARMLTVKR 120

Query: 121 EREIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
           ERE+E+G+ KR+SRKLD+ WK+SIV RPPPSLKKL+E+  AE   E A
Sbjct: 121 EREVEEGINKRISRKLDRKWKKSIVPRPPPSLKKLREEEAAEEAKESA 167

[Close]

BLAST of Spo10493.1 vs. ExPASy Swiss-Prot
Match: RK29_ARATH (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.300e-39
Identity = 93/150 (62.00%), Postives = 115/150 (76.67%), Query Frame = 1


		  
Query: 22  STLLTKSSFHGLRLP---SVNLSSSLRLRVQTPPSSVVVMVKKEDELKELRTKTNEQLNE 81
           S   T SSFHG+R+    S  + ++  +   +P  SVV+M K+E ELKE+R+KT EQL E
Sbjct: 21  SATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMMSKREAELKEIRSKTTEQLQE 80

Query: 82  EILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRLSRKLDK 141
           E++ LKGELFMLRLQ+SAR  FK SDF RM+K+VARMLTVKREREI++G+ KRLSRKLD+
Sbjct: 81  EVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRKLDR 140

Query: 142 AWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
            WK+SIV RPPPSLKKLQE+  AE  AE A
Sbjct: 141 QWKKSIVPRPPPSLKKLQEEEAAEEAAEAA 170

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BLAST of Spo10493.1 vs. ExPASy Swiss-Prot
Match: RK29_MAIZE (50S ribosomal protein L29, chloroplastic OS=Zea mays GN=RPL29 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.000e-31
Identity = 82/157 (52.23%), Postives = 109/157 (69.43%), Query Frame = 1


		  
Query: 9   STPCSSGLTSPPKSTLLTK--SSFHGLRLPSVNLSSSLRLRVQTPPS-----SVVVMVKK 68
           S   +S L S P+        ++F  +RL     +    L V + P+     ++V M K+
Sbjct: 5   SLAAASPLASIPRGIAAQAPCAAFLSIRLGGATATRFAGLAVASQPAERRAAAMVAMAKR 64

Query: 69  EDELKELRTKTNEQLNEEILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKRE 128
           E EL+E+R  T EQ+ EE++ LKGELF+LRL+RSAR+ FK S+F RMRKR+ARMLTVKRE
Sbjct: 65  EQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRKRIARMLTVKRE 124

Query: 129 REIEQGVGKRLSRKLDKAWKRSIVVRPPPSLKKLQEK 159
           REIEQG+ KRLSRKLD+ WK+SIVVRPPPSL+  +E+
Sbjct: 125 REIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

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BLAST of Spo10493.1 vs. TAIR (Arabidopsis)
Match: AT5G65220.1 (Ribosomal L29 family protein )

HSP 1 Score: 164.1 bits (414), Expect = 7.500e-41
Identity = 93/150 (62.00%), Postives = 115/150 (76.67%), Query Frame = 1


		  
Query: 22  STLLTKSSFHGLRLP---SVNLSSSLRLRVQTPPSSVVVMVKKEDELKELRTKTNEQLNE 81
           S   T SSFHG+R+    S  + ++  +   +P  SVV+M K+E ELKE+R+KT EQL E
Sbjct: 21  SATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMMSKREAELKEIRSKTTEQLQE 80

Query: 82  EILQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRLSRKLDK 141
           E++ LKGELFMLRLQ+SAR  FK SDF RM+K+VARMLTVKREREI++G+ KRLSRKLD+
Sbjct: 81  EVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTVKREREIKEGIKKRLSRKLDR 140

Query: 142 AWKRSIVVRPPPSLKKLQEKATAEAEAEKA 169
            WK+SIV RPPPSLKKLQE+  AE  AE A
Sbjct: 141 QWKKSIVPRPPPSLKKLQEEEAAEEAAEAA 170

The following BLAST results are available for this feature:

BLAST of Spo10493.1 vs. NCBI nr
BLAST of Spo10493.1 vs. UniProtKB/TrEMBL
BLAST of Spo10493.1 vs. ExPASy Swiss-Prot
BLAST of Spo10493.1 vs. TAIR (Arabidopsis)

BLAST of Spo10493.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902206968\|gb\|KNA15596.1\|	3.5e-80	100.	hypothetical protein SOVF_0968...	[more]
gi\|731338849\|ref\|XP_010680537.1\|	1.4e-60	81.7	PREDICTED: 50S ribosomal prote...	[more]
gi\|359485888\|ref\|XP_003633349.1\|	1.3e-42	67.3	PREDICTED: 50S ribosomal prote...	[more]
gi\|731434995\|ref\|XP_010645220.1\|	1.1e-41	66.6	PREDICTED: 50S ribosomal prote...	[more]
gi\|565361224\|ref\|XP_006347357.1\|	7.1e-41	58.9	PREDICTED: 50S ribosomal prote...	[more]

BLAST of Spo10493.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R7W8_SPIOL	2.4e-80	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C4P8_BETVU	9.6e-61	81.7	Uncharacterized protein OS=Bet...	[more]
F6I6Q6_VITVI	9.0e-43	67.3	Putative uncharacterized prote...	[more]
F6HWM0_VITVI	7.6e-42	66.6	Putative uncharacterized prote...	[more]
M1CK76_SOLTU	5.0e-41	58.9	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo10493.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2


Match Name	E-value	Identity	Description
RK29_ARATH	1.3e-39	62.0	50S ribosomal protein L29, chl...	[more]
RK29_MAIZE	1.0e-31	52.2	50S ribosomal protein L29, chl...	[more]

BLAST of Spo10493.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G65220.1	7.5e-41	62.0	Ribosomal L29 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001854	Ribosomal protein L29	GENE3D	1.10.287.310		coord: 65..126 score: 3.0
IPR001854	Ribosomal protein L29	HAMAP	MF_00374	Ribosomal_L29	coord: 58..122 score: 13
IPR001854	Ribosomal protein L29	PFAM	PF00831	Ribosomal_L29	coord: 66..122 score: 7.9
IPR001854	Ribosomal protein L29	TIGRFAMs	TIGR00012	TIGR00012	coord: 67..122 score: 3.4
IPR001854	Ribosomal protein L29	unknown	SSF46561	Ribosomal protein L29 (L29p)	coord: 65..125 score: 2.35
None	No IPR available	unknown	Coil	Coil	coord: 153..168 score: -coord: 58..93 scor
None	No IPR available	PANTHER	PTHR10916	60S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29	coord: 6..165 score: 3.8
None	No IPR available	PANTHER	PTHR10916:SF0	50S RIBOSOMAL PROTEIN L29, CHLOROPLASTIC	coord: 6..165 score: 3.8

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome