Spo10212.1 (mRNA) | SpinachBase

Overview


Name	Spo10212.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Transmembrane protein, putative
Location	chr5 : 34615278 .. 34615493 (+)
Sequence length	216

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGCGGTGACGGCGGCGATCATAGCGGTGGTGGGTCTAGGATTGGGCTGGATAGCAATCGAGATGGCCTGCAAACCATGCCTTGAGAAAGGCCGTGAAGCCATCGATCGTAGCCTCAATCCCGATTACGACCCTGATGACAACGACAACATCCACACTCCTCTCAACCCTGCCTCTGATTCCTCCACCTCGCCACCGTCTCAGGCCGCCTGA

mRNA sequence

ATGGGGGCGGTGACGGCGGCGATCATAGCGGTGGTGGGTCTAGGATTGGGCTGGATAGCAATCGAGATGGCCTGCAAACCATGCCTTGAGAAAGGCCGTGAAGCCATCGATCGTAGCCTCAATCCCGATTACGACCCTGATGACAACGACAACATCCACACTCCTCTCAACCCTGCCTCTGATTCCTCCACCTCGCCACCGTCTCAGGCCGCCTGA

Coding sequence (CDS)

ATGGGGGCGGTGACGGCGGCGATCATAGCGGTGGTGGGTCTAGGATTGGGCTGGATAGCAATCGAGATGGCCTGCAAACCATGCCTTGAGAAAGGCCGTGAAGCCATCGATCGTAGCCTCAATCCCGATTACGACCCTGATGACAACGACAACATCCACACTCCTCTCAACCCTGCCTCTGATTCCTCCACCTCGCCACCGTCTCAGGCCGCCTGA

Protein sequence

MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPASDSSTSPPSQAA

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo10212	Spo10212	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo10212.1	Spo10212.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10212.1.exon.1	Spo10212.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo10212.1.CDS.1	Spo10212.1.CDS.1	CDS

Homology

[Close]

BLAST of Spo10212.1 vs. NCBI nr
Match: gi|902136598|gb|KNA04465.1| (hypothetical protein SOVF_199470 [Spinacia oleracea])

HSP 1 Score: 139.4 bits (350), Expect = 2.400e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS 60
          MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS
Sbjct: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS 60

Query: 61 DSSTSPPSQAA 72
          DSSTSPPSQAA
Sbjct: 61 DSSTSPPSQAA 71

[Close]

BLAST of Spo10212.1 vs. NCBI nr
Match: gi|731377947|ref|XP_010668026.1| (PREDICTED: uncharacterized protein LOC104885010 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 113.6 bits (283), Expect = 1.400e-22
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 1


		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS 60
          MGAVTAAIIAV GLG+ WI IEMACKPCLEKGREAIDRSLNPDYDPDD+DNI  PLNP  
Sbjct: 1  MGAVTAAIIAVAGLGVAWITIEMACKPCLEKGREAIDRSLNPDYDPDDHDNIRAPLNPTV 60

Query: 61 DSSTSPPSQA 71
          DSS+  PSQ+
Sbjct: 61 DSSSDQPSQS 70

[Close]

BLAST of Spo10212.1 vs. NCBI nr
Match: gi|1021026882|gb|KZM84669.1| (hypothetical protein DCAR_027909 [Daucus carota subsp. sativus])

HSP 1 Score: 97.4 bits (241), Expect = 1.000e-17
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 1


		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNP 59
          MG VTAAIIA+ G+ LGWI IE+ACKPCLE+GREAIDRSLNPDYDPDD+D I  PLNP
Sbjct: 1  MGGVTAAIIAIAGIVLGWITIEIACKPCLEQGREAIDRSLNPDYDPDDDDRIRAPLNP 58

[Close]

BLAST of Spo10212.1 vs. NCBI nr
Match: gi|802596201|ref|XP_012072115.1| (PREDICTED: uncharacterized protein LOC105633999 [Jatropha curcas])

HSP 1 Score: 95.5 bits (236), Expect = 3.900e-17
Identity = 52/71 (73.24%), Postives = 57/71 (80.28%), Query Frame = 1


		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDD---NDNIHTPLN 60
          M A+T A+IAV G+ LGWIAIE+ACKPCLEKGREAIDRSLNPDYDPDD   + NIH PLN
Sbjct: 1  MAAITTALIAVAGIILGWIAIEIACKPCLEKGREAIDRSLNPDYDPDDDVVSSNIHAPLN 60

Query: 61 PASDSSTSPPS 69
          P SD   SP S
Sbjct: 61 PNSDGQ-SPAS 70

[Close]

BLAST of Spo10212.1 vs. NCBI nr
Match: gi|255557281|ref|XP_002519671.1| (PREDICTED: uncharacterized protein LOC8264099 [Ricinus communis])

HSP 1 Score: 95.1 bits (235), Expect = 5.200e-17
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1


		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNP-- 60
          M A+T+A+IAV G+ LGWIAIEMACKPCLE+GR AI RSLNPDYDPDD+ N+H PLNP  
Sbjct: 1  MAAITSALIAVAGVILGWIAIEMACKPCLEQGRNAIGRSLNPDYDPDDDLNVHAPLNPNP 60

Query: 61 ---ASDSSTSP 67
              SDSS++P
Sbjct: 61 NPDPSDSSSNP 71

[Close]

BLAST of Spo10212.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QB26_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_199470 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.700e-30
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1


		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS 60
          MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS
Sbjct: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS 60

Query: 61 DSSTSPPSQAA 72
          DSSTSPPSQAA
Sbjct: 61 DSSTSPPSQAA 71

[Close]

BLAST of Spo10212.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B555_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_013700 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.800e-23
Identity = 57/70 (81.43%), Postives = 61/70 (87.14%), Query Frame = 1


		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNPAS 60
          MGAVTAAIIAV GLG+ WI IEMACKPCLEKGREAIDRSLNPDYDPDD+DNI  PLNP  
Sbjct: 1  MGAVTAAIIAVAGLGVAWITIEMACKPCLEKGREAIDRSLNPDYDPDDHDNIRAPLNPTV 60

Query: 61 DSSTSPPSQA 71
          DSS+  PSQ+
Sbjct: 61 DSSSDQPSQS 70

[Close]

BLAST of Spo10212.1 vs. UniProtKB/TrEMBL
Match: A0A067KSJ8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04626 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.800e-17
Identity = 52/71 (73.24%), Postives = 57/71 (80.28%), Query Frame = 1


		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDD---NDNIHTPLN 60
          M A+T A+IAV G+ LGWIAIE+ACKPCLEKGREAIDRSLNPDYDPDD   + NIH PLN
Sbjct: 1  MAAITTALIAVAGIILGWIAIEIACKPCLEKGREAIDRSLNPDYDPDDDVVSSNIHAPLN 60

Query: 61 PASDSSTSPPS 69
          P SD   SP S
Sbjct: 61 PNSDGQ-SPAS 70

[Close]

BLAST of Spo10212.1 vs. UniProtKB/TrEMBL
Match: B9S102_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0632320 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 3.600e-17
Identity = 49/71 (69.01%), Postives = 58/71 (81.69%), Query Frame = 1


		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDNIHTPLNP-- 60
          M A+T+A+IAV G+ LGWIAIEMACKPCLE+GR AI RSLNPDYDPDD+ N+H PLNP  
Sbjct: 1  MAAITSALIAVAGVILGWIAIEMACKPCLEQGRNAIGRSLNPDYDPDDDLNVHAPLNPNP 60

Query: 61 ---ASDSSTSP 67
              SDSS++P
Sbjct: 61 NPDPSDSSSNP 71

[Close]

BLAST of Spo10212.1 vs. UniProtKB/TrEMBL
Match: A0A068VG21_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00008386001 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.300e-16
Identity = 51/77 (66.23%), Postives = 59/77 (76.62%), Query Frame = 1


		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDNDN-IHTPLNPA 60
          MGA+TAA+IA+ G+ LGWI IE+ACKPCLEKGREAIDR+LNPDYDPDD+D  I  PL P 
Sbjct: 1  MGALTAALIAIAGVALGWITIEIACKPCLEKGREAIDRNLNPDYDPDDHDEAIRAPLEPK 60

Query: 61 S------DSSTSPPSQA 71
          S       SSTS P +A
Sbjct: 61 SMQHSEHPSSTSTPVKA 77

[Close]

BLAST of Spo10212.1 vs. TAIR (Arabidopsis)
Match: AT2G34585.1 (unknown protein)

HSP 1 Score: 83.6 bits (205), Expect = 5.500e-17
Identity = 43/72 (59.72%), Postives = 51/72 (70.83%), Query Frame = 1


		  
Query: 1  MGAVTAAIIAVVGLGLGWIAIEMACKPCLEKGREAIDRSLNPDYDPDDND-----NIHTP 60
          M A+T+A+IA+ G+ LGWI IE+ACKPCLE GREAIDRSLNPDYDPDD D     ++  P
Sbjct: 1  MAAITSAVIAIAGIILGWITIELACKPCLESGREAIDRSLNPDYDPDDQDVDSSSDVRAP 60

Query: 61 LNPASDSSTSPP 68
          L P      S P
Sbjct: 61 LIPNHPPDNSDP 72

The following BLAST results are available for this feature:

BLAST of Spo10212.1 vs. NCBI nr
BLAST of Spo10212.1 vs. UniProtKB/TrEMBL
BLAST of Spo10212.1 vs. ExPASy Swiss-Prot
BLAST of Spo10212.1 vs. TAIR (Arabidopsis)

BLAST of Spo10212.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902136598\|gb\|KNA04465.1\|	2.4e-30	100.	hypothetical protein SOVF_1994...	[more]
gi\|731377947\|ref\|XP_010668026.1\|	1.4e-22	81.4	PREDICTED: uncharacterized pro...	[more]
gi\|1021026882\|gb\|KZM84669.1\|	1.0e-17	79.3	hypothetical protein DCAR_0279...	[more]
gi\|802596201\|ref\|XP_012072115.1\|	3.9e-17	73.2	PREDICTED: uncharacterized pro...	[more]
gi\|255557281\|ref\|XP_002519671.1\|	5.2e-17	69.0	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo10212.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QB26_SPIOL	1.7e-30	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B555_BETVU	9.8e-23	81.4	Uncharacterized protein OS=Bet...	[more]
A0A067KSJ8_JATCU	2.8e-17	73.2	Uncharacterized protein OS=Jat...	[more]
B9S102_RICCO	3.6e-17	69.0	Putative uncharacterized prote...	[more]
A0A068VG21_COFCA	2.3e-16	66.2	Uncharacterized protein OS=Cof...	[more]

BLAST of Spo10212.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo10212.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT2G34585.1	5.5e-17	59.7	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33982	FAMILY NOT NAMED	coord: 1..57 score: 7.4
None	No IPR available	PANTHER	PTHR33982:SF3	SUBFAMILY NOT NAMED	coord: 1..57 score: 7.4

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005773	vacuole