Spo09784.1 (mRNA) | SpinachBase

Overview


Name	Spo09784.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L19, chloroplastic
Location	chr6 : 42067682 .. 42071776 (+)
Sequence length	1510

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATCAGATATTGGGCCAACTTGTACAATCAAGGAACGAGAACGGAGAACCCACTATTTAGTACAAGCCCATTCCATTTCGAGAAAACAGTTCAGAAAAAAGAGAAAAGAAAACAACACAATTCCAACGGATAGGGAGAAGGAAAACGCAGAAGATAAGGAGTTCCTCCTTCTGAGAGCAGCAAACTCTCTCACTTCAATGACTTGAATTTCCCTGCAATAAACTCAACAATTTACCAATCTTACACTTTCTTCTTTTCTTCTTCATCATCATCAATCAATGGCGTCCAAGGTTCTTCCACAGGTTTTCATCTCTCTCTTTCACTCTCCTTTTTTTTTTCTGGAAAATTCTTTTTAAGCTTCCGAATTCGCTGATTTCAGGCACTTCTTGTAATTCCATCGAATCACTCGCTTCAATGTCCGCCATTGAAGAAGCAATTAGGGTTTCCAATTGACTCCAACCGCCGATTTTCACTCTCCAGCAACTGTAGGAGTAATCTTATGGTTTCTAGGGCTTCATCTAACTTATTCAGCTCCAATTTCAGCTCGATTTTCTCTTTTCCGGCAAGAAATTCTTTCGTTGTGAGGTCGGAAGCGGAGGATAGCTCCGACGCTCCGGCTGAGAGTGTAGCTGTCGTTGCCGAGGAGGAATTGCCGGTGGAGTCGGAAGCCGAAGCTGAAGAAAGGCCGCCGAGGCAGCAAAGGGTCAAATTGGGAGATATAATGGGGGTAAAATTGATTTCATTTATTATCTGTAGTGCTAACTGCTAAGTGCTAACTATACTTAAAATCAGTTTGTTCAAGTTGATTATATATTTCTTGTAGTGTTGCATAGTCTATTAAATTAGTCAATTCAAATGGATTCTAGTATATGTTTTGAGACAATGATTTACCCTATTTGAGTTCTTTGAGTTTAGTTTTCACAATCATCCAAAATTAAACACTAATCTAAAATAAAATTCAATCCAAAATTGGTTTCGGCCAAAGAAAAACAAGATTTCAAAATTATTTTTGAATTAAAAAAGACGAGTGACAAGTAGATAAATAATTAGGTGCCACGTAGATATTTTTATTAATTAATTATTACTATTACGCATATACAATTTCATCCAAAATCAAACACTCTAATAATTAAAAAATAAATCTAAAATGAAATTCAATTTAAATTCAAAAACTAATCTAATCTACTACCTTATATATAAAATATAGCAGTTGGTTTATATATGAATTTTATTTTAACTTAACAATTTAATATAAACTGTGCATCGCACGGGCTAAAATCTAGTTGGGAGATATAATGGGGGTAAAATTGATTTCATTTATTATCTGTAGTGCTAACTGCTAAGTGCTAACTATACTTAAAATCAGTTTGTTCAAGTTGATTATATATTTCTTGTAGTGTTGCATAGTCTATTAAATTAGTCAATTCAAATGGATTCTAGTATATGTTTTGAGACAATGATTTACCCTATTTGAGTTCTTTGAGTTTAGTTTTCACAATTCCGTAAGCAATAATGCAATGTAGGTTTTTCCAGTTAGGTTATTTGATTGTTATGAAGTGTTAAGCATTGTAAAATAATTGATAAAATTAGGGAATTTGAATATTAGAATCTTAGGTTGGAATTTCTTTTTGAGAAAACATGAGCAAAAGAAAAGGAGATCCGAAAGCAATAAAGGTAGGTTTTTCCAGTTAGGTTATTTGATTGTTATGAAGTGTTGAGCATTGTAAAATAACTGTATGAAATTAGGAAATTTGAATCATAGGTTGGAATTTCTTTTTGAGGAAAAGAAAAGAAGGGTGTTTAGCGTTAGCTAATTTCGGTGCCACGATGAAAATGGCTAAAATGGAGAAGAATGATAATCTGGAAAAGGTTCAAGGGACTTGATCATGAGCAATGATAATGAGATGACAACTGGACATAATAATTGTGGATTGGATAATGTTTAAAAGTTTGGGTTTCTTGAACTTGCGATTTGGATTTTTACAATATGATTTTTTTTCCTTAATTAGATATTGAACAAGAAAGCAGTTCACGCTGCGGAGGAGCTGCGTCCAGTGCCGGGCATCAGGACTGGAGACATTGTGCAAATCAGATTGGTTAGTAGTTTCCTCTTTTTCGTACTGAATTCAGCATTATCAAGTGCTTAATCATGCTCTGTTGAATTCTTTGGTGGTTTTATAGGAAGTTCCAGAAAACAAGCGTAGGCTATCTGTGTACAAAGGTATTGTGATATCTAGGCAGAATGCAGGTATTCATACCACCATCCGGATTCGAAGGATCATCGCTGGTGTAGGTGTTGAGATAGTGTTCCCATTGTAAGTATTAATGCTCTTCTTGTGCTTGGTTTTATTGTTCCCTGCAGTCATGCACTATAAATTATGCTGTGCAGTCTTCACTAGGGGGATAGGTTGTGTACTAGATACTATTGTGTACTAGATTTTTTATTTAGTGTTTGCAGCAGAATATGTGTTAGAATGAGTAACAATAGCTACCATATCACTGTCCATCTCTGCAAAATATCAAAATTAGGTTGCATGATTTACTGACAGAAGGCTTGATCTGCATCATCAATTAGTTCTGTCTGCTAATAGTCTTAGTCTCATTTAAACATTAAAAACTCCCATCAATTTCTGAAATCTACTATTGATGCTGCTCCATTTGCTGGATGTTGTTAAGAACATCACAGTCATGCTGAAATGTTAGAGTGGAGTTTGTAGTTGCTAAGCTGTCTTCTTTGCTCTTGAATCATAGTAATGTCATATAAATATACAATACCTTTACAATATACAATACCTTTACCCCAATGTTTTTTAATTAGTAACAAGGCTCCGTCTAGGGCAAGGTGAGAACGTATGTAGTCTTACCCAGTTACCCATACATAGTATGATTGCAAAGAAACTCTTCTGCATTTTTGTCATGATTTCAACGGGAATGTTCTAGCTATGCCTTGATCTGAAAGAGTGAAGAGTAATAACTGGCCAAGTTATTCATACAAATAAGAAGTAAAGGATAGTTTAGTGCCGGTGAATGACTTTTTTGTAAGAGAAGGATGATAATTCCCTGACATGCTGGTGATTTACTAGTATTAGAATTGTTTGACATGCAAAATGTTAATTTTGTATTTTTGCTTGATCACAAGCTTGACTTGGTTTAGCGAGATATTGGAGGAATCTTTAATAGATGAAATTGATGTCCTTGACTGGCTGATCATAATAGTTATCCGAATAATCCATTTCTCGTCTTGCTAGTATAGCTAAGTTGTGTTAGTTATTGTTTAGAACCATAAGTCAAGTGTAGAAGTTACCAAGATTCAAGGGTTTCAGTAAAGTATGTTGCTTTACAAATGGTTGTAGTAAACTAGTAATTGCTGAAGTATCATTAACTGCAATCTAATCCATATTTGGATGTGCTCTGCATCCTTGAATCTGATTATGCTTCTATGTGATTTTTGTACAGGTACTCACCAAACATCAAGGAAATAAAAGTTGTTTCTCACCGGAAAGTCAGGAAGGCAAGGCTATACTATCTAAGAGACAAACTTCCCAGGCTCTCGACTTTCAAATGAAAACATAAATTTTCCTGAAGCTTTCTCGTCCTGTGAGCCTTTCATGCTTTTGTCATTATTTACGATTCACATATTGTAAGAAAATCTTCCTTTTTTTGTTTGGTAAGATCTATTTTCTTTTAGGGAAACTGTTGCTTGTAAGTTGTAATTTTGGTGCCGAAAGTGTACTGATCACCTTCATAGAGAGTAGATCGCATTATGCAGTGTATAATATCTCCAAGAATATTCATGAGGTTATGCCAAATATTTGTTAATGCAAATGTATTATGCATGGTTGAGATGGAACTAATGTGACTTTGTGGGAGTTTACTCTTACTGCTGGGTTTCCGAGAAGCTTATCAGAGTAGATTAGATGAATTTGATAAAGAAATACTCACTATGCATGCAGTGGCGGATCTTGAATAATTTTACGAGTGGGTTAGTAGAATAATTAAGAAAAATACTAGGGGTCGAGTCCATCCAAGTAAAGATAGTTGTAGGCCGGGCCGAGTCCTGACCCAAGCCAGCATGAACAAAGCACGACCCAACAC

mRNA sequence

GATCAGATATTGGGCCAACTTGTACAATCAAGGAACGAGAACGGAGAACCCACTATTTAGTACAAGCCCATTCCATTTCGAGAAAACAGTTCAGAAAAAAGAGAAAAGAAAACAACACAATTCCAACGGATAGGGAGAAGGAAAACGCAGAAGATAAGGAGTTCCTCCTTCTGAGAGCAGCAAACTCTCTCACTTCAATGACTTGAATTTCCCTGCAATAAACTCAACAATTTACCAATCTTACACTTTCTTCTTTTCTTCTTCATCATCATCAATCAATGGCGTCCAAGGTTCTTCCACAGGCACTTCTTGTAATTCCATCGAATCACTCGCTTCAATGTCCGCCATTGAAGAAGCAATTAGGGTTTCCAATTGACTCCAACCGCCGATTTTCACTCTCCAGCAACTGTAGGAGTAATCTTATGGTTTCTAGGGCTTCATCTAACTTATTCAGCTCCAATTTCAGCTCGATTTTCTCTTTTCCGGCAAGAAATTCTTTCGTTGTGAGGTCGGAAGCGGAGGATAGCTCCGACGCTCCGGCTGAGAGTGTAGCTGTCGTTGCCGAGGAGGAATTGCCGGTGGAGTCGGAAGCCGAAGCTGAAGAAAGGCCGCCGAGGCAGCAAAGGGTCAAATTGGGAGATATAATGGGGATATTGAACAAGAAAGCAGTTCACGCTGCGGAGGAGCTGCGTCCAGTGCCGGGCATCAGGACTGGAGACATTGTGCAAATCAGATTGGAAGTTCCAGAAAACAAGCGTAGGCTATCTGTGTACAAAGGTATTGTGATATCTAGGCAGAATGCAGGTATTCATACCACCATCCGGATTCGAAGGATCATCGCTGGTGTAGGTGTTGAGATAGTGTTCCCATTGTACTCACCAAACATCAAGGAAATAAAAGTTGTTTCTCACCGGAAAGTCAGGAAGGCAAGGCTATACTATCTAAGAGACAAACTTCCCAGGCTCTCGACTTTCAAATGAAAACATAAATTTTCCTGAAGCTTTCTCGTCCTGTGAGCCTTTCATGCTTTTGTCATTATTTACGATTCACATATTGTAAGAAAATCTTCCTTTTTTTGTTTGGTAAGATCTATTTTCTTTTAGGGAAACTGTTGCTTGTAAGTTGTAATTTTGGTGCCGAAAGTGTACTGATCACCTTCATAGAGAGTAGATCGCATTATGCAGTGTATAATATCTCCAAGAATATTCATGAGGTTATGCCAAATATTTGTTAATGCAAATGTATTATGCATGGTTGAGATGGAACTAATGTGACTTTGTGGGAGTTTACTCTTACTGCTGGGTTTCCGAGAAGCTTATCAGAGTAGATTAGATGAATTTGATAAAGAAATACTCACTATGCATGCAGTGGCGGATCTTGAATAATTTTACGAGTGGGTTAGTAGAATAATTAAGAAAAATACTAGGGGTCGAGTCCATCCAAGTAAAGATAGTTGTAGGCCGGGCCGAGTCCTGACCCAAGCCAGCATGAACAAAGCACGACCCAACAC

Coding sequence (CDS)

ATGGCGTCCAAGGTTCTTCCACAGGCACTTCTTGTAATTCCATCGAATCACTCGCTTCAATGTCCGCCATTGAAGAAGCAATTAGGGTTTCCAATTGACTCCAACCGCCGATTTTCACTCTCCAGCAACTGTAGGAGTAATCTTATGGTTTCTAGGGCTTCATCTAACTTATTCAGCTCCAATTTCAGCTCGATTTTCTCTTTTCCGGCAAGAAATTCTTTCGTTGTGAGGTCGGAAGCGGAGGATAGCTCCGACGCTCCGGCTGAGAGTGTAGCTGTCGTTGCCGAGGAGGAATTGCCGGTGGAGTCGGAAGCCGAAGCTGAAGAAAGGCCGCCGAGGCAGCAAAGGGTCAAATTGGGAGATATAATGGGGATATTGAACAAGAAAGCAGTTCACGCTGCGGAGGAGCTGCGTCCAGTGCCGGGCATCAGGACTGGAGACATTGTGCAAATCAGATTGGAAGTTCCAGAAAACAAGCGTAGGCTATCTGTGTACAAAGGTATTGTGATATCTAGGCAGAATGCAGGTATTCATACCACCATCCGGATTCGAAGGATCATCGCTGGTGTAGGTGTTGAGATAGTGTTCCCATTGTACTCACCAAACATCAAGGAAATAAAAGTTGTTTCTCACCGGAAAGTCAGGAAGGCAAGGCTATACTATCTAAGAGACAAACTTCCCAGGCTCTCGACTTTCAAATGA

Protein sequence

MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo09784	Spo09784	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo09784.1	Spo09784.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09784.1.exon.1	Spo09784.1.exon.1	exon
Spo09784.1.exon.2	Spo09784.1.exon.2	exon
Spo09784.1.exon.3	Spo09784.1.exon.3	exon
Spo09784.1.exon.4	Spo09784.1.exon.4	exon
Spo09784.1.exon.5	Spo09784.1.exon.5	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09784.1.utr5p.1	Spo09784.1.utr5p.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09784.1.CDS.1	Spo09784.1.CDS.1	CDS
Spo09784.1.CDS.2	Spo09784.1.CDS.2	CDS
Spo09784.1.CDS.3	Spo09784.1.CDS.3	CDS
Spo09784.1.CDS.4	Spo09784.1.CDS.4	CDS
Spo09784.1.CDS.5	Spo09784.1.CDS.5	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo09784.1.utr3p.1	Spo09784.1.utr3p.1	three_prime_UTR

Homology

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BLAST of Spo09784.1 vs. NCBI nr
Match: gi|75107094|sp|P82413.2|RK19_SPIOL (RecName: Full=50S ribosomal protein L19, chloroplastic; AltName: Full=CL19; Flags: Precursor)

HSP 1 Score: 435.6 bits (1119), Expect = 5.300e-119
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1


		  
Query: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60
           MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS
Sbjct: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60

Query: 61  NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLG 120
           NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLG
Sbjct: 61  NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLG 120

Query: 121 DIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTT 180
           DIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTT
Sbjct: 121 DIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTT 180

Query: 181 IRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 234
           IRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK
Sbjct: 181 IRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 233

[Close]

BLAST of Spo09784.1 vs. NCBI nr
Match: gi|731332290|ref|XP_010677124.1| (PREDICTED: 50S ribosomal protein L19, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 350.5 bits (898), Expect = 2.200e-93
Identity = 195/237 (82.28%), Postives = 208/237 (87.76%), Query Frame = 1


		  
Query: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60
           MASK+LPQALL IPSNHSLQCPPLKKQLGFP+++ RRF LS N R N MVSRASSNLFSS
Sbjct: 1   MASKILPQALLTIPSNHSLQCPPLKKQLGFPVETYRRFFLS-NSRGNSMVSRASSNLFSS 60

Query: 61  NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEA----EERPPRQQR 120
           NFSSIF FPARNSFVVRSEAE+SS A AE    + EEELP  SEAEA    E R P + R
Sbjct: 61  NFSSIFDFPARNSFVVRSEAEESSAALAE----IVEEELPENSEAEAVEEDEPRSPFKPR 120

Query: 121 VKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAG 180
            KLGD+MGILNK+AV A+EE RPVP IRTGD+VQIRLEVPEN+RRLSVYKGIVISRQNAG
Sbjct: 121 TKLGDVMGILNKRAVEASEEQRPVPDIRTGDVVQIRLEVPENRRRLSVYKGIVISRQNAG 180

Query: 181 IHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 234
           IHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVV+HRKVRKARLYYLRDKLPRLSTFK
Sbjct: 181 IHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVAHRKVRKARLYYLRDKLPRLSTFK 232

[Close]

BLAST of Spo09784.1 vs. NCBI nr
Match: gi|658022227|ref|XP_008346520.1| (PREDICTED: 50S ribosomal protein L19-2, chloroplastic-like [Malus domestica])

HSP 1 Score: 261.5 bits (667), Expect = 1.400e-66
Identity = 162/250 (64.80%), Postives = 186/250 (74.40%), Query Frame = 1


		  
Query: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60
           M SK+LPQALL IP N + + PP+K  LGF     RR   SSNC S + +SR SS+   S
Sbjct: 1   MGSKILPQALLTIPRNPN-EFPPVK--LGFSAALARR---SSNC-SRVSLSRVSSSSIGS 60

Query: 61  NFSSIFSFPARNSFVVRSEAEDSSDAPAE--------------SVAVV---AEEELPVES 120
            FS I S  ++ +FVVR+E     +  A               SVAVV   AE E  +ES
Sbjct: 61  VFSPIVSAMSKRNFVVRAEPSSEGETGATDDAQEIEAAGRGEASVAVVESEAEAEAVLES 120

Query: 121 EAEAEERPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLS 180
           E E E +PPR+ RVKLGDIMGILNK+AV AAE+ RPVP IRTGD+VQI+LEVPENKRRLS
Sbjct: 121 EPE-EPKPPRKSRVKLGDIMGILNKRAVEAAEQERPVPDIRTGDVVQIKLEVPENKRRLS 180

Query: 181 VYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLR 234
           +YKGIVISRQNAGIHTTIRIRRIIAG+GVEIVFPLYSPNIKE+KV+SHRKVR+ARLYYLR
Sbjct: 181 IYKGIVISRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKELKVLSHRKVRRARLYYLR 240

[Close]

BLAST of Spo09784.1 vs. NCBI nr
Match: gi|694391016|ref|XP_009371056.1| (PREDICTED: 50S ribosomal protein L19-2, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 261.5 bits (667), Expect = 1.400e-66
Identity = 163/252 (64.68%), Postives = 186/252 (73.81%), Query Frame = 1


		  
Query: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60
           M SK+LPQALL IP N + Q PP+K  LGF     RR   SSNC S + +SR SS+   S
Sbjct: 1   MGSKILPQALLTIPRNPN-QFPPVK--LGFSAALCRR---SSNC-SRVWLSRVSSSSIES 60

Query: 61  NFSSIFSFPARNSFVVRSEAEDSSDAPAE--------------SVAVV-----AEEELPV 120
            FS I S  ++ +FVVR+E     +  A               SVAVV     AE E  +
Sbjct: 61  VFSPIVSAMSKRNFVVRAEPSSEGETGATDNAQENEAAGSGEASVAVVESEAEAEAEAVL 120

Query: 121 ESEAEAEERPPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRR 180
           ESE E E +PPR+ RVKLGDIMGILNK+AV AAE+ RPVP IRTGD+VQI+LEVPENKRR
Sbjct: 121 ESEPE-EPKPPRKSRVKLGDIMGILNKRAVEAAEQERPVPDIRTGDVVQIKLEVPENKRR 180

Query: 181 LSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYY 234
           LS+YKGIVISRQNAGIHTTIRIRRIIAG+GVEIVFPLYSPNIKE+KV+SHRKVR+ARLYY
Sbjct: 181 LSIYKGIVISRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKELKVLSHRKVRRARLYY 240

[Close]

BLAST of Spo09784.1 vs. NCBI nr
Match: gi|1000941993|ref|XP_015582459.1| (PREDICTED: 50S ribosomal protein L19, chloroplastic [Ricinus communis])

HSP 1 Score: 259.2 bits (661), Expect = 6.800e-66
Identity = 154/236 (65.25%), Postives = 183/236 (77.54%), Query Frame = 1


		  
Query: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSN--CRSNLMVSRASSNLF 60
           MASK+LPQAL++IP N + QCPP +K LGF    +R  S  SN  CR +L     SSN F
Sbjct: 1   MASKILPQALVLIPINPT-QCPPPRK-LGFSAAVHRSCSSLSNSTCRVSL-----SSNSF 60

Query: 61  SSNFSSIFSFPARNSFVVRSEAEDSSDAP-AESVAVVAEEELPVESEAEAEERPPRQQRV 120
            SN  SI S  A+  F+ R+E+E+S+ A  AE  + V E E   E++AE  E  PR+  +
Sbjct: 61  GSNLDSIISAFAKQRFIARAESEESAAAEVAEEESEVLEVEGQEEAKAEEIEIEPRKPII 120

Query: 121 KLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGI 180
           KLGDIMGILN++AV A+E  RP+P IRTGDI+QI+LEVPEN+RRLS+YKGIVISRQNAGI
Sbjct: 121 KLGDIMGILNRRAVEASENERPIPDIRTGDILQIKLEVPENRRRLSIYKGIVISRQNAGI 180

Query: 181 HTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 234
           HTTIR+RRIIAG+GVEIVFPLYSPNIKEIKVV HRKVR+ARLYYLRDKLPRLSTFK
Sbjct: 181 HTTIRVRRIIAGIGVEIVFPLYSPNIKEIKVVKHRKVRRARLYYLRDKLPRLSTFK 229

[Close]

BLAST of Spo09784.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QR20_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_150800 PE=4 SV=1)

HSP 1 Score: 435.6 bits (1119), Expect = 3.700e-119
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1


		  
Query: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60
           MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS
Sbjct: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60

Query: 61  NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLG 120
           NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLG
Sbjct: 61  NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLG 120

Query: 121 DIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTT 180
           DIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTT
Sbjct: 121 DIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTT 180

Query: 181 IRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 234
           IRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK
Sbjct: 181 IRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 233

[Close]

BLAST of Spo09784.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CE33_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g105130 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.600e-93
Identity = 195/237 (82.28%), Postives = 208/237 (87.76%), Query Frame = 1


		  
Query: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60
           MASK+LPQALL IPSNHSLQCPPLKKQLGFP+++ RRF LS N R N MVSRASSNLFSS
Sbjct: 1   MASKILPQALLTIPSNHSLQCPPLKKQLGFPVETYRRFFLS-NSRGNSMVSRASSNLFSS 60

Query: 61  NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEA----EERPPRQQR 120
           NFSSIF FPARNSFVVRSEAE+SS A AE    + EEELP  SEAEA    E R P + R
Sbjct: 61  NFSSIFDFPARNSFVVRSEAEESSAALAE----IVEEELPENSEAEAVEEDEPRSPFKPR 120

Query: 121 VKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAG 180
            KLGD+MGILNK+AV A+EE RPVP IRTGD+VQIRLEVPEN+RRLSVYKGIVISRQNAG
Sbjct: 121 TKLGDVMGILNKRAVEASEEQRPVPDIRTGDVVQIRLEVPENRRRLSVYKGIVISRQNAG 180

Query: 181 IHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 234
           IHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVV+HRKVRKARLYYLRDKLPRLSTFK
Sbjct: 181 IHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVAHRKVRKARLYYLRDKLPRLSTFK 232

[Close]

BLAST of Spo09784.1 vs. UniProtKB/TrEMBL
Match: D7U6T6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0616g00020 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.400e-64
Identity = 153/238 (64.29%), Postives = 182/238 (76.47%), Query Frame = 1


		  
Query: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLG-FPIDSNRRFSLSSNCRSNLMVSRASSNLFS 60
           MASKVLPQAL + P + S Q PP K  L  FP  S R  SL+ N    L  SR SSN F+
Sbjct: 1   MASKVLPQALFITPRS-SNQWPPKKLGLSTFP--SPRSSSLNLN---RLSTSRFSSNSFA 60

Query: 61  SNFSSIFSFPARNSFVVRSEAEDS----SDAPAESVAVVAEEELPVESEAEAEERPPRQQ 120
            +F  I   P R  F+VR+EA++     +D   E    V+E E  V+ +AE E +PPR+ 
Sbjct: 61  FHFRPIVVSPKR-FFIVRAEADNEGELGADENTEEEETVSETESEVKLDAEDEAKPPRKP 120

Query: 121 RVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNA 180
           RVKLGDIMGILNK+A+ A+E+ RPVP +RTGDIV+I+LEVPEN+RRLS+YKGIVIS+QNA
Sbjct: 121 RVKLGDIMGILNKRAIEASEKERPVPDLRTGDIVEIKLEVPENRRRLSIYKGIVISKQNA 180

Query: 181 GIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 234
           GIHTTIR+RRIIAGVGVEIVFP+YSPNIKEIKVV+HRKVR+ARLYYLRDKLPRLSTFK
Sbjct: 181 GIHTTIRVRRIIAGVGVEIVFPVYSPNIKEIKVVNHRKVRRARLYYLRDKLPRLSTFK 231

[Close]

BLAST of Spo09784.1 vs. UniProtKB/TrEMBL
Match: M5WV30_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009692mg PE=4 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 4.400e-64
Identity = 155/243 (63.79%), Postives = 179/243 (73.66%), Query Frame = 1


		  
Query: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60
           MASK LPQAL+ +P N +   PP+K  LGF    +RR S +S   + + +SR SS+ F S
Sbjct: 45  MASKALPQALITMPRNPTHH-PPVK--LGFSASFSRRSSSNS---ARVSLSRVSSSSFGS 104

Query: 61  NFSSIFSFPARNSFVVRS------EAEDSSDAPAESVAVVAEEELPVESEAEAEE----R 120
           +F  I +  +R  FVVR+      EAE      A    V AE E  VESE E  E    +
Sbjct: 105 SFCPIVAAMSRLDFVVRADSSTEGEAEAVGSEEASEAIVEAEAEPVVESEPEEPEPEEPK 164

Query: 121 PPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVI 180
            PR+ RVKLGDIMGILNK+AV AA + RPVP IRTGD+VQI+LEVPENKRRLSVYKGIVI
Sbjct: 165 TPRKSRVKLGDIMGILNKRAVEAAVQERPVPDIRTGDVVQIKLEVPENKRRLSVYKGIVI 224

Query: 181 SRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLS 234
           SRQNAGIHTTIRIRRIIAG+GVEIVFPLYSPNIKE+KV+SHRKVR+ARLYYLRDKLPR S
Sbjct: 225 SRQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKELKVLSHRKVRRARLYYLRDKLPRFS 281

[Close]

BLAST of Spo09784.1 vs. UniProtKB/TrEMBL
Match: A9PBS4_POPTR (Ribosomal protein L19 OS=Populus trichocarpa GN=POPTR_0001s15230g PE=2 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 5.800e-64
Identity = 149/243 (61.32%), Postives = 180/243 (74.07%), Query Frame = 1


		  
Query: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSN-LMVSRASSNLFS 60
           M SK+LPQAL VIP + +    P+ K+LGF    NR   LS++  S+   VSR SS   S
Sbjct: 1   MGSKILPQALAVIPRSPTQF--PVPKKLGFSSTINRSSYLSNSASSSRFSVSRVSSTSLS 60

Query: 61  SNFSSIFSFPARNSFVVRSEAE-------DSSDAPAESVAVVAEEELPVESEAEAEE--R 120
           SN  + F   +R SFV R+E+E       + ++   E V V   EE  V++EAE E   +
Sbjct: 61  SNLEAFFKDFSRQSFVTRAESESGGGEVVEETENVEEEVVVEGSEEEEVQAEAEVEGAVK 120

Query: 121 PPRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVI 180
            PR+ RVKLGDI+GILNK+AV  +E  RP+P IRTGDIV+I+LEVPEN+RRLS+YKGIVI
Sbjct: 121 EPRKPRVKLGDIIGILNKRAVETSEMERPIPDIRTGDIVEIKLEVPENRRRLSIYKGIVI 180

Query: 181 SRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLS 234
           S+QNAGIHTTIRIRRIIAG+GVEIVFPLYSPNIKEIKV+ HRKVR+ARLYYLRDKLPRLS
Sbjct: 181 SKQNAGIHTTIRIRRIIAGIGVEIVFPLYSPNIKEIKVIKHRKVRRARLYYLRDKLPRLS 240

[Close]

BLAST of Spo09784.1 vs. ExPASy Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2)

HSP 1 Score: 435.6 bits (1119), Expect = 3.300e-121
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1


		  
Query: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60
           MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS
Sbjct: 1   MASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSS 60

Query: 61  NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLG 120
           NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLG
Sbjct: 61  NFSSIFSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLG 120

Query: 121 DIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTT 180
           DIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTT
Sbjct: 121 DIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTT 180

Query: 181 IRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 234
           IRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK
Sbjct: 181 IRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 233

[Close]

BLAST of Spo09784.1 vs. ExPASy Swiss-Prot
Match: RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 7.700e-62
Identity = 140/228 (61.40%), Postives = 167/228 (73.25%), Query Frame = 1


		  
Query: 6   LPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSI 65
           LPQAL +IP N +       K LGF    +   S + +  S + VSR S N   S F   
Sbjct: 8   LPQALHMIPRNPTQS----SKNLGF----SSFLSCAPSMDSRISVSRLSLNHPGSKFGFS 67

Query: 66  FSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMGI 125
                RN F+VR+E  ++     E VA +A+ E  VE   EA  +P R+ R+KLGD+MGI
Sbjct: 68  LDTRVRNEFIVRAEEGNTEAESEEFVAEIADTEGNVEEVVEA--KPTRKPRIKLGDVMGI 127

Query: 126 LNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRR 185
           LN+KA+  AE++RPVP IRTGDIV+I+LEVPENKRRLS+YKGIV+SRQNAGIHTTIRIRR
Sbjct: 128 LNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRR 187

Query: 186 IIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 234
           IIAG+GVEIVFP+YSPNIKEIKVVSHRKVR+ARLYYLRDKLPRLSTFK
Sbjct: 188 IIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 225

[Close]

BLAST of Spo09784.1 vs. ExPASy Swiss-Prot
Match: RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.000e-61
Identity = 145/236 (61.44%), Postives = 170/236 (72.03%), Query Frame = 1


		  
Query: 2   ASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSN 61
           +S +LPQAL +IP   S       K LG      R    +S+  S L VSR   N  SSN
Sbjct: 4   SSHLLPQALHMIPRTPSFS----SKNLGVSSILPR----ASSVNSRLSVSRVFLNHSSSN 63

Query: 62  FSSIFSFPARNSFVVRSEAEDSSDAPAESV---AVVAEEELPVESEAEAEE-RPPRQQRV 121
           F        R  F+ +  AE+S++   E+V   AV  E E   E+   AEE +PP + RV
Sbjct: 64  FGFAIDSKKRKEFIAK--AEESTEGETEAVVENAVETEAEGEGEATVAAEEAKPPWKTRV 123

Query: 122 KLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGI 181
           KLGDIMG+LNKKA+  AE +RPVPG+RTGDIV+I+LEVPENKRRLS+YKGIV+SRQNAGI
Sbjct: 124 KLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGI 183

Query: 182 HTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 234
           HTTIRIRRIIAG+GVEIVFP+YSPNIKEIKVVSHRKVR+ARLYYLRDKLPRLSTFK
Sbjct: 184 HTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 229

[Close]

BLAST of Spo09784.1 vs. ExPASy Swiss-Prot
Match: RL19_CORJK (50S ribosomal protein L19 OS=Corynebacterium jeikeium (strain K411) GN=rplS PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 1.800e-18
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 1


		  
Query: 123 MGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPE-NKRRLSVYKGIVISRQNAGIHTTI 182
           M IL+K  V AA+    +P  R GD + + ++V E +K RL V++G+VI RQN+GI  T 
Sbjct: 1   MHILDK--VDAAQLRDDIPEFRAGDTLDVHVKVIEGSKSRLQVFRGVVIRRQNSGIRETF 60

Query: 183 RIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 234
            IR++  G+GVE  FP++SPNI  I V+S  KVR+A+LYYLR++  + +  K
Sbjct: 61  TIRKVSFGIGVERTFPVHSPNIDRIDVLSRGKVRRAKLYYLRERRGKAARIK 110

[Close]

BLAST of Spo09784.1 vs. ExPASy Swiss-Prot
Match: RL19_CYAP4 (50S ribosomal protein L19 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplS PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.000e-18
Identity = 48/102 (47.06%), Postives = 73/102 (71.57%), Query Frame = 1


		  
Query: 134 AEELRP-VPGIRTGDIVQIRLEVPE-NKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVG 193
           AE+L+  +P I  GD V++ + + E NK R   Y+GIVI+++N+GI+ TI +RRI  GVG
Sbjct: 12  AEQLKSNLPEIHVGDTVKVGVIIQEGNKERTQPYEGIVIAKRNSGINATITVRRIFQGVG 71

Query: 194 VEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 234
           VE VF L+SP ++ IK++   KVR+A+LYYLRD++ + +  K
Sbjct: 72  VERVFLLHSPRVESIKIIKRGKVRRAKLYYLRDRVGKATRVK 113

[Close]

BLAST of Spo09784.1 vs. TAIR (Arabidopsis)
Match: AT4G17560.1 (Ribosomal protein L19 family protein)

HSP 1 Score: 238.4 bits (607), Expect = 4.400e-63
Identity = 140/228 (61.40%), Postives = 167/228 (73.25%), Query Frame = 1


		  
Query: 6   LPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSNFSSI 65
           LPQAL +IP N +       K LGF    +   S + +  S + VSR S N   S F   
Sbjct: 8   LPQALHMIPRNPTQS----SKNLGF----SSFLSCAPSMDSRISVSRLSLNHPGSKFGFS 67

Query: 66  FSFPARNSFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGDIMGI 125
                RN F+VR+E  ++     E VA +A+ E  VE   EA  +P R+ R+KLGD+MGI
Sbjct: 68  LDTRVRNEFIVRAEEGNTEAESEEFVAEIADTEGNVEEVVEA--KPTRKPRIKLGDVMGI 127

Query: 126 LNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRR 185
           LN+KA+  AE++RPVP IRTGDIV+I+LEVPENKRRLS+YKGIV+SRQNAGIHTTIRIRR
Sbjct: 128 LNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRR 187

Query: 186 IIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 234
           IIAG+GVEIVFP+YSPNIKEIKVVSHRKVR+ARLYYLRDKLPRLSTFK
Sbjct: 188 IIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 225

[Close]

BLAST of Spo09784.1 vs. TAIR (Arabidopsis)
Match: AT5G47190.1 (Ribosomal protein L19 family protein)

HSP 1 Score: 238.0 bits (606), Expect = 5.700e-63
Identity = 145/236 (61.44%), Postives = 170/236 (72.03%), Query Frame = 1


		  
Query: 2   ASKVLPQALLVIPSNHSLQCPPLKKQLGFPIDSNRRFSLSSNCRSNLMVSRASSNLFSSN 61
           +S +LPQAL +IP   S       K LG      R    +S+  S L VSR   N  SSN
Sbjct: 4   SSHLLPQALHMIPRTPSFS----SKNLGVSSILPR----ASSVNSRLSVSRVFLNHSSSN 63

Query: 62  FSSIFSFPARNSFVVRSEAEDSSDAPAESV---AVVAEEELPVESEAEAEE-RPPRQQRV 121
           F        R  F+ +  AE+S++   E+V   AV  E E   E+   AEE +PP + RV
Sbjct: 64  FGFAIDSKKRKEFIAK--AEESTEGETEAVVENAVETEAEGEGEATVAAEEAKPPWKTRV 123

Query: 122 KLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGI 181
           KLGDIMG+LNKKA+  AE +RPVPG+RTGDIV+I+LEVPENKRRLS+YKGIV+SRQNAGI
Sbjct: 124 KLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGI 183

Query: 182 HTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 234
           HTTIRIRRIIAG+GVEIVFP+YSPNIKEIKVVSHRKVR+ARLYYLRDKLPRLSTFK
Sbjct: 184 HTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 229

[Close]

BLAST of Spo09784.1 vs. TAIR (Arabidopsis)
Match: AT5G11750.1 (Ribosomal protein L19 family protein)

HSP 1 Score: 140.2 bits (352), Expect = 1.600e-33
Identity = 66/108 (61.11%), Postives = 91/108 (84.26%), Query Frame = 1


		  
Query: 122 IMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTI 181
           IM I++K+AV     LR +P I+ G IVQ+++EVPENKRR+S+ KG+VI+R+NAG+++T 
Sbjct: 119 IMQIVDKEAVEEVRNLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTF 178

Query: 182 RIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRL 230
           RIRR++AGVGVE +FPLYSPN++EIKVV  +KVR+A+LYYLRDK+  L
Sbjct: 179 RIRRLVAGVGVESMFPLYSPNLREIKVVDKKKVRRAKLYYLRDKVNAL 226

[Close]

BLAST of Spo09784.1 vs. TAIR (Arabidopsis)
Match: AT4G11630.1 (Ribosomal protein L19 family protein)

HSP 1 Score: 134.0 bits (336), Expect = 1.200e-31
Identity = 90/219 (41.10%), Postives = 134/219 (61.19%), Query Frame = 1


		  
Query: 30  FPIDSNRRFSLSSNCRS------------NLMVSRASSNLFSSNFSSIFSFPA--RNSFV 89
           F I +  RF+ SS+C S            +   SRA++ L SS  ++ FS  A  + +F 
Sbjct: 16  FSISNTLRFTSSSSCGSWSENESRKLGFDSCPSSRAATYLISSLKNAGFSSSAIPKQNFT 75

Query: 90  VRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPRQQRVKLGD-----IMGILNKKA 149
             S    ++             +  V+   E++   P++ + K  D     IM I++K+A
Sbjct: 76  YASRCFSTTG------------DSSVQGSPESDCVVPQRIKFKRLDKTAKHIMQIVDKEA 135

Query: 150 VHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGV 209
           V     LR +P I+ G IVQ+++EVPENKRR+S+ KG+VI+R+NAG+++T RIRR++AGV
Sbjct: 136 VEEVRSLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARRNAGLNSTFRIRRLVAGV 195

Query: 210 GVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRL 230
           GVE +FPLYSPN++EIKVV  +KVR+A+LYYLRDK+  L
Sbjct: 196 GVESMFPLYSPNLREIKVVDKKKVRRAKLYYLRDKVNAL 222

[Close]

BLAST of Spo09784.1 vs. TAIR (Arabidopsis)
Match: AT1G24240.1 (Ribosomal protein L19 family protein)

HSP 1 Score: 127.5 bits (319), Expect = 1.100e-29
Identity = 80/176 (45.45%), Postives = 114/176 (64.77%), Query Frame = 1


		  
Query: 55  SNLFSSNFSSIFSFPARN-SFVVRSEAEDSSDAPAESVAVVAEEELPVESEAEAEERPPR 114
           S+L ++ FSS+   P +N S    S   DS     ES  VV +       +  A+     
Sbjct: 56  SSLKNAGFSSLAVVPKQNFSSRCFSTTGDSVQGSPESDCVVPQRIKFKRLDKTAKH---- 115

Query: 115 QQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQ 174
                   IM I++K+AV     LR +P I+ G IVQ+++EVPENKRR+S+ KG+VI+R+
Sbjct: 116 --------IMQIVDKEAVEEVRTLREIPEIKPGYIVQLKVEVPENKRRVSIVKGVVIARR 175

Query: 175 NAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRL 230
           NAG+++T RIRR++AGVGVE +FPLYSPN++ IKVV  +KVR+A+LYYLR+K+  L
Sbjct: 176 NAGLNSTFRIRRLVAGVGVESMFPLYSPNLRVIKVVDKKKVRRAKLYYLREKVNAL 219

The following BLAST results are available for this feature:

BLAST of Spo09784.1 vs. NCBI nr
BLAST of Spo09784.1 vs. UniProtKB/TrEMBL
BLAST of Spo09784.1 vs. ExPASy Swiss-Prot
BLAST of Spo09784.1 vs. TAIR (Arabidopsis)

BLAST of Spo09784.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|75107094\|sp\|P82413.2\|RK19_SPIOL	5.3e-119	100.	RecName: Full=50S ribosomal pr...	[more]
gi\|731332290\|ref\|XP_010677124.1\|	2.2e-93	82.2	PREDICTED: 50S ribosomal prote...	[more]
gi\|658022227\|ref\|XP_008346520.1\|	1.4e-66	64.8	PREDICTED: 50S ribosomal prote...	[more]
gi\|694391016\|ref\|XP_009371056.1\|	1.4e-66	64.6	PREDICTED: 50S ribosomal prote...	[more]
gi\|1000941993\|ref\|XP_015582459.1\|	6.8e-66	65.2	PREDICTED: 50S ribosomal prote...	[more]

BLAST of Spo09784.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QR20_SPIOL	3.7e-119	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CE33_BETVU	1.6e-93	82.2	Uncharacterized protein OS=Bet...	[more]
D7U6T6_VITVI	3.4e-64	64.2	Putative uncharacterized prote...	[more]
M5WV30_PRUPE	4.4e-64	63.7	Uncharacterized protein OS=Pru...	[more]
A9PBS4_POPTR	5.8e-64	61.3	Ribosomal protein L19 OS=Popul...	[more]

BLAST of Spo09784.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
RK19_SPIOL	3.3e-121	100.	50S ribosomal protein L19, chl...	[more]
RK191_ARATH	7.7e-62	61.4	50S ribosomal protein L19-1, c...	[more]
RK192_ARATH	1.0e-61	61.4	50S ribosomal protein L19-2, c...	[more]
RL19_CORJK	1.8e-18	45.5	50S ribosomal protein L19 OS=C...	[more]
RL19_CYAP4	4.0e-18	47.0	50S ribosomal protein L19 OS=C...	[more]

BLAST of Spo09784.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT4G17560.1	4.4e-63	61.4	Ribosomal protein L19 family p...	[more]
AT5G47190.1	5.7e-63	61.4	Ribosomal protein L19 family p...	[more]
AT5G11750.1	1.6e-33	61.1	Ribosomal protein L19 family p...	[more]
AT4G11630.1	1.2e-31	41.1	Ribosomal protein L19 family p...	[more]
AT1G24240.1	1.1e-29	45.4	Ribosomal protein L19 family p...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001857	Ribosomal protein L19	PRINTS	PR00061	RIBOSOMALL19	coord: 186..209 score: 1.0E-8coord: 127..156 score: 1.
IPR001857	Ribosomal protein L19	PANTHER	PTHR15680	RIBOSOMAL PROTEIN L19	coord: 1..233 score: 6.5E
IPR001857	Ribosomal protein L19	PFAM	PF01245	Ribosomal_L19	coord: 137..226 score: 6.7
IPR001857	Ribosomal protein L19	TIGRFAMs	TIGR01024	TIGR01024	coord: 138..225 score: 1.2
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 122..233 score: 5.92
None	No IPR available	PANTHER	PTHR15680:SF10	50S RIBOSOMAL PROTEIN L19-1, CHLOROPLASTIC-RELATED	coord: 1..233 score: 6.5E

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0048481	plant ovule development
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0051607	defense response to virus
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016020	membrane
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding