Spo09689.1 (mRNA)

Overview
NameSpo09689.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionCyclopropane-fatty-acyl-phospholipid synthase
Locationchr3 : 85484129 .. 85486916 (+)
Sequence length713
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACATATAGTTTCCTTTATGCTCAATAGATAATATACTCTACTTTATGCTACTAAAATCACTCTTAAGATTCTTGTTGTTTACAAGTTGTGATGTGATTTAAGCTCCTCAATTCTCCGTGGGATGTCTTTTTTGATCCTGTCAGAGAAAAGGTTTATATAGAAATAGCTGGCCAACATCAGATCTGGGAACACAATCTATCAGACGAAACCAACATAGCTTTTAGTGGTGATGGTTATGAAAGAAACTTGAATGGTTCAAGGTATGAGTATAGAGTGTGTAGACATTTGTGTCCTAGTTTAGTTGTAGTGAGCTGATAACACCGCATATGTCTTTTGATACTGTAATTTCTGTGTAACCTCAGTTTTCCCATACTCATAAATCTCATGAGAATAGACTACACGAGCTGCTTCTTCATCTCCCCCCCCCGTTCGTCATGAAGCTTTCTTGTTCTGTAGTAGTCTCCATGTTGTTTAAGTAGAACTAAGCTATGCGACAAAGGTTTTGCTGTTGTTCATCCTAAGTTGTGATTGAATTGGTGGCAGATTCTTAGTGACAAAGAGACCATCAAACTTCAGTCCAAGCAGGACCACTAACGAGTAGGATCTAAAATACATTTTAAGGGACGATTACGAGATGTGCCTGGACGTAAAATTCAAGGCTAGAGCTGATTGCCTCAAGTTTGACGAACTTCATACTGTAACTGTTACAAACACATGACATAGAGGATGTCAGGTTTGTATATTTTTCAGTGGACTCTATCCCAAGTTTATTTCAAAAAACTGGGACGTATTCCTTTTCAGTCTCTCTTGTAAGTATTGTATGTCTTGTCTAGTTATCCTGCATAAAATACTCATATTTGTTAAGTTTGATACTACTTTGACTATTGTGCAGCAGGTTTCAAGACACGAACACTAGGTAATTACCAGGTACTCTTTGCAAAATTCAGGTATTTTTTCTTGTTGATCAACAGCTAGTTGACAGTGTATCTGTATCACTTACTCGAGGTCTGGTATAATGCAGATTGTTTTTTTGCGGCCTGGAAATCTCGCTGCATGTGGTGACCCTATATCCCGCCTTTGGGTATGATCACTTTGACATCCTATGTTTTGTATGTCATATTCTTCCTAATCATACCCCAGATTTCTTTTATACGAAGCACGTATTTACTTAAATCTCATTAAAATCACTGGTTGTTTGATTAGTACCTTGGTTGATATACTGAAACGAATGCTATTTGTTTCCCCTACCACAAACCGATTGGAAGTTGATGAAGGAAGCATTCAAGCTTCTTAGACCAGGTGGTACCCTTGCCATCACAGACAATTCCATATGTGATATATTTCTCTCTTATCAGTCCAACTTGTTGCCACTATATGACTTTGGGATACTAACATTGATGATTTTATCCTTTTTGCAGTGCTTGCTTCGATATGTGATGCCAAATTATAAGGCTTTCTACATCTTTCTCTCACTGTTAGGTAAGGCTCCACATGATGAAGGAGTTTCCTGACTCTTTTTTTCAGTATACTCTATATATCATACCTATGAGGTTTGTAGTCATTTTAGGTTTGTAGTCATTTTTTCAGTATACTCTATATATCATACCTATGAGGTTTGTAGTCTTATAATCATATAACTAATCATATGTATCATGAAAAACGTTTAGAATATGGAAATAGGTTCGTTTGTTGGTAGTTGGGTTCAAAAATGTCATTTTTGTCCAATATAATTGTTTTCGCAACCAATCTAATTTTTGTTTTCGCATATGAAACTTAATTTAATTTATTGGTTTGCATGTACGGTGTTCTTTTAAAGGTTTTCAAAACTCCAAGGGAGGAGCCCTTTACCAAAAAGGAGTTGGATGAGGTTCGAGACAAGTGGGTTATTTACTTCAACGATTGTGAACTACCCTCAGTGTAATAAATAGAGTAGATTTGTAGTTATTCGTGACTCTTACATTATTTTGTTATTTATCGATTTAATTAATTACATTTGAATTAATTCGGTAATATTATTGGAAATTTGAAATTTATATCATTTTTGAGAATGTCAAGCTGGTGTTTGATGAAACAGAAATTATATTGCAAAATCAGAAATTATATTGCAGAATATTAGGAATTATATTGCAGATTTTTTTTTTTAAAAAAAAAAAAAATTAAAACGCAAAAGTTGCCCTTGTTTGCAACAAGAGCAACTTATGTGCAGCTTATAAGGTGCCCTTGTTGCGACAAGGGCACCTTATAAGTTTCACATAAGGTGCCCTTGTTGCAAACAAGGGCACCTTATAAGATTATAAGTTGCCCTTATTAAGGGCAACTTTTGATAATTTTACATAAGTGACCCCCCATTGGTGGCACTTACGAAGGGAACCTTATAAGCCACTTTTAAGAGCAACTTATAAGGTTTTTTCCTCTAATGTAAGCTGGGATGTTGTATGGTGATGTTGGCTTGATGTTTTTGAGGTTGCGTGCTTTATTTTCTTTGTTAATTCTGGTCAACTTTACCAGAGTTGACTTGTTGTTTGTATGCCTTGATTTTTAGTATTATGAATGTGGTTTCAGGGGATTTGGTTGGTCAGTAGATACAAACCTCCATCGTTGCAGGTCAGTCGAGGATGGTATGCTGAATTGATTGATTGTTGGGCAGTTGTCCTGCTGTTGTGTGTGTGTTGTTGCTGTAGGGGTAGTGGTTGTCAATGCTTTCTATTTTGGGTTGGTTTGCTGGCCTTTGTGGATCCAGGATGCCAAACACACGAGGCTCTCATTTTCTAGTGAAGTGCGGAAGTGA

mRNA sequence

ACATATAGTTTCCTTTATGCTCAATAGATAATATACTCTACTTTATGCTACTAAAATCACTCTTAAGATTCTTGTTGTTTACAAGTTGTGATGTGATTTAAGCTCCTCAATTCTCCGTGGGATGTCTTTTTTGATCCTGTCAGAGAAAAGGTTTATATAGAAATAGCTGGCCAACATCAGATCTGGGAACACAATCTATCAGACGAAACCAACATAGCTTTTAGTGGTGATGGTTATGAAAGAAACTTGAATGGTTCAAGATTCTTAGTGACAAAGAGACCATCAAACTTCAGTCCAAGCAGGACCACTAACGAGTAGGATCTAAAATACATTTTAAGGGACGATTACGAGATGTGCCTGGACGTAAAATTCAAGGCTAGAGCTGATTGCCTCAAGTTTGACGAACTTCATACTGTAACTGTTACAAACACATGACATAGAGGATGTCAGCAGGTTTCAAGACACGAACACTAGGTAATTACCAGATTGTTTTTTTGCGGCCTGGAAATCTCGCTGCATGTGGTGACCCTATATCCCGCCTTTGGTGCTTGCTTCGATATGTGATGCCAAATTATAAGGCTTTCTACATCTTTCTCTCACTGTTAGGGGTAGTGGTTGTCAATGCTTTCTATTTTGGGTTGGTTTGCTGGCCTTTGTGGATCCAGGATGCCAAACACACGAGGCTCTCATTTTCTAGTGAAGTGCGGAAGTGA

Coding sequence (CDS)

ATGTCAGCAGGTTTCAAGACACGAACACTAGGTAATTACCAGATTGTTTTTTTGCGGCCTGGAAATCTCGCTGCATGTGGTGACCCTATATCCCGCCTTTGGTGCTTGCTTCGATATGTGATGCCAAATTATAAGGCTTTCTACATCTTTCTCTCACTGTTAGGGGTAGTGGTTGTCAATGCTTTCTATTTTGGGTTGGTTTGCTGGCCTTTGTGGATCCAGGATGCCAAACACACGAGGCTCTCATTTTCTAGTGAAGTGCGGAAGTGA

Protein sequence

MSAGFKTRTLGNYQIVFLRPGNLAACGDPISRLWCLLRYVMPNYKAFYIFLSLLGVVVVNAFYFGLVCWPLWIQDAKHTRLSFSSEVRK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo09689Spo09689gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo09689.1Spo09689.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09689.1.exon.1Spo09689.1.exon.1exon
Spo09689.1.exon.2Spo09689.1.exon.2exon
Spo09689.1.exon.3Spo09689.1.exon.3exon
Spo09689.1.exon.4Spo09689.1.exon.4exon
Spo09689.1.exon.5Spo09689.1.exon.5exon
Spo09689.1.exon.6Spo09689.1.exon.6exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09689.1.utr5p.1Spo09689.1.utr5p.1five_prime_UTR
Spo09689.1.utr5p.2Spo09689.1.utr5p.2five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo09689.1.CDS.1Spo09689.1.CDS.1CDS
Spo09689.1.CDS.2Spo09689.1.CDS.2CDS
Spo09689.1.CDS.3Spo09689.1.CDS.3CDS
Spo09689.1.CDS.4Spo09689.1.CDS.4CDS
Spo09689.1.CDS.5Spo09689.1.CDS.5CDS


Homology
[Close]
BLAST of Spo09689.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QHE6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_178870 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.000e-6
Identity = 25/30 (83.33%), Postives = 27/30 (90.00%), Query Frame = 1 

		  

Query: 2   SAGFKTRTLGNYQIVFLRPGNLAACGDPIS 32
           +AGFKTRTLGNYQIVF RPGNLAA GDP +
Sbjct: 829 AAGFKTRTLGNYQIVFSRPGNLAAFGDPFA 858
[Close]
BLAST of Spo09689.1 vs. TAIR (Arabidopsis)
Match: AT3G23460.1 (S-adenosyl-L-methionine-dependent methyltransferases superfamily protein)

HSP 1 Score: 48.5 bits (114), Expect = 2.400e-6
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 1 

		  

Query: 2   SAGFKTRTLGNYQIVFLRPGNLAACGD 29
           +AGFKTRT+G+YQIVF RPGN+ A GD
Sbjct: 258 AAGFKTRTVGDYQIVFSRPGNVIALGD 284
[Close]
BLAST of Spo09689.1 vs. TAIR (Arabidopsis)
Match: AT3G23510.1 (Cyclopropane-fatty-acyl-phospholipid synthase)

HSP 1 Score: 48.1 bits (113), Expect = 3.200e-6
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 1 

		  

Query: 2   SAGFKTRTLGNYQIVFLRPGNLAACGD 29
           +AGFKTRTLG+YQ+VF RPGN+AA  D
Sbjct: 829 AAGFKTRTLGDYQLVFSRPGNVAAFAD 855
[Close]
BLAST of Spo09689.1 vs. TAIR (Arabidopsis)
Match: AT3G23530.1 (Cyclopropane-fatty-acyl-phospholipid synthase)

HSP 1 Score: 47.4 bits (111), Expect = 5.500e-6
Identity = 20/27 (74.07%), Postives = 23/27 (85.19%), Query Frame = 1 

		  

Query: 2   SAGFKTRTLGNYQIVFLRPGNLAACGD 29
           +AGFKT TLGNYQ+VF RPGN+AA  D
Sbjct: 829 AAGFKTLTLGNYQLVFSRPGNVAAFAD 855
The following BLAST results are available for this feature:
BLAST of Spo09689.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo09689.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QHE6_SPIOL8.0e-683.3Uncharacterized protein OS=Spi... [more]
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BLAST of Spo09689.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo09689.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT3G23460.12.4e-674.0S-adenosyl-L-methionine-depend... [more]
AT3G23510.13.2e-674.0Cyclopropane-fatty-acyl-phosph... [more]
AT3G23530.15.5e-674.0Cyclopropane-fatty-acyl-phosph... [more]
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