Spo07759.1 (mRNA)

Overview
NameSpo07759.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 46120189 .. 46120534 (-)
Sequence length246
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCATGAAAGTCCAATGTAAGACTCTTGTTCTTGTTCTTGTTCTTGTTCTTGCACTGGTTTTGCTGTCATGGTCGAGTGGAGTGCAAGCGAGGTTAATAGGTGTATCGTCTCAGACATTAAAACATCTGCGATCCGATATGAAGAATCCTTTCAACAAGGTAGACTCGAGTTTTCGAAGGATACCTCCTAGCAGATCGAATCCAACCCAGAACAAGTAAATTCTGGTTTTGTTCATGATCAAGTCTTCAGAAAGAATAGTTAGGTGCTTCATAGTTGTCTCAGATACTGTGTTTCTTGTTCTGTTTTTTTGTCAGGTTGAAGCCTCTACTACTTCATGGATGA

mRNA sequence

ATGACCATGAAAGTCCAATGTAAGACTCTTGTTCTTGTTCTTGTTCTTGTTCTTGCACTGGTTTTGCTGTCATGGTCGAGTGGAGTGCAAGCGAGGTTAATAGGTGTATCGTCTCAGACATTAAAACATCTGCGATCCGATATGAAGAATCCTTTCAACAAGGTAGACTCGAGTTTTCGAAGGATACCTCCTAGCAGATCGAATCCAACCCAGAACAAGTTGAAGCCTCTACTACTTCATGGATGA

Coding sequence (CDS)

ATGACCATGAAAGTCCAATGTAAGACTCTTGTTCTTGTTCTTGTTCTTGTTCTTGCACTGGTTTTGCTGTCATGGTCGAGTGGAGTGCAAGCGAGGTTAATAGGTGTATCGTCTCAGACATTAAAACATCTGCGATCCGATATGAAGAATCCTTTCAACAAGGTAGACTCGAGTTTTCGAAGGATACCTCCTAGCAGATCGAATCCAACCCAGAACAAGTTGAAGCCTCTACTACTTCATGGATGA

Protein sequence

MTMKVQCKTLVLVLVLVLALVLLSWSSGVQARLIGVSSQTLKHLRSDMKNPFNKVDSSFRRIPPSRSNPTQNKLKPLLLHG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo07759Spo07759gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo07759.1Spo07759.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07759.1.CDS.2Spo07759.1.CDS.2CDS
Spo07759.1.CDS.1Spo07759.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07759.1.exon.2Spo07759.1.exon.2exon
Spo07759.1.exon.1Spo07759.1.exon.1exon


Homology
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BLAST of Spo07759.1 vs. NCBI nr
Match: gi|870852848|gb|KMT04729.1| (hypothetical protein BVRB_7g169100 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 98.2 bits (243), Expect = 6.900e-18
Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 1 

		  

Query: 3  MKVQCKTLVLVLVLVLALVLLSWSSGVQARLIGVSSQTLKHLRSDMKNPFNKVDSSFRRI 62
          MKV CKT+VLVLVL   LVLLSWSSG +ARL+ VSSQ+LKHLRS  KNP   VDSSFRRI
Sbjct: 1  MKVYCKTIVLVLVL--GLVLLSWSSGARARLLVVSSQSLKHLRSHEKNPSKNVDSSFRRI 60

Query: 63 PPSRSNPTQNK 74
          PPSRSNPTQNK
Sbjct: 61 PPSRSNPTQNK 69
[Close]
BLAST of Spo07759.1 vs. NCBI nr
Match: gi|593331269|ref|XP_007139061.1| (hypothetical protein PHAVU_009G261500g [Phaseolus vulgaris])

HSP 1 Score: 58.2 bits (139), Expect = 8.000e-6
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 1 

		  

Query: 16 LVLALVLLSWSSGVQARLIGV-------SSQTLKHLRSDMKNPFNKVDSSFRRIPPSRSN 75
          L L+L+LL+WS+   A +          SSQTL  L +  KN   ++DSSFRRIPPS+SN
Sbjct: 13 LTLSLLLLTWSTRATAEVFPTIQVHSWPSSQTLSSLHAHRKNLSKQLDSSFRRIPPSKSN 72

Query: 76 PTQNKLKP 77
          PTQNK  P
Sbjct: 73 PTQNKFNP 80
[Close]
BLAST of Spo07759.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BXK0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g169100 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.800e-18
Identity = 56/71 (78.87%), Postives = 60/71 (84.51%), Query Frame = 1 

		  

Query: 3  MKVQCKTLVLVLVLVLALVLLSWSSGVQARLIGVSSQTLKHLRSDMKNPFNKVDSSFRRI 62
          MKV CKT+VLVLVL   LVLLSWSSG +ARL+ VSSQ+LKHLRS  KNP   VDSSFRRI
Sbjct: 1  MKVYCKTIVLVLVL--GLVLLSWSSGARARLLVVSSQSLKHLRSHEKNPSKNVDSSFRRI 60

Query: 63 PPSRSNPTQNK 74
          PPSRSNPTQNK
Sbjct: 61 PPSRSNPTQNK 69
[Close]
BLAST of Spo07759.1 vs. UniProtKB/TrEMBL
Match: V7B0H4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G261500g PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.600e-6
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 1 

		  

Query: 16 LVLALVLLSWSSGVQARLIGV-------SSQTLKHLRSDMKNPFNKVDSSFRRIPPSRSN 75
          L L+L+LL+WS+   A +          SSQTL  L +  KN   ++DSSFRRIPPS+SN
Sbjct: 13 LTLSLLLLTWSTRATAEVFPTIQVHSWPSSQTLSSLHAHRKNLSKQLDSSFRRIPPSKSN 72

Query: 76 PTQNKLKP 77
          PTQNK  P
Sbjct: 73 PTQNKFNP 80
The following BLAST results are available for this feature:
BLAST of Spo07759.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|870852848|gb|KMT04729.1|6.9e-1878.8hypothetical protein BVRB_7g16... [more]
gi|593331269|ref|XP_007139061.1|8.0e-650.0hypothetical protein PHAVU_009... [more]
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BLAST of Spo07759.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0J8BXK0_BETVU4.8e-1878.8Uncharacterized protein OS=Bet... [more]
V7B0H4_PHAVU5.6e-650.0Uncharacterized protein OS=Pha... [more]
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BLAST of Spo07759.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo07759.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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