Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCGTAGGCACATCCCGTCTGATGAAGAGGCGGCTCTCTAAGCATCAGACCAAAATACTGATGGTTGGCCTCGACTCTTCAGGGAAGACAACAATCCTTTTCAAGCTCAAGCTCGGACAAGTTGTACGGACACTCCCCACGATAGGTATTTACCAGCCTAAGTCTAGCTTTTGTCAGCATGCATGCATCACTGCTCAGCTCATTTTCTTTTTCTGTTTTCTTCTTCTCTGACTCCCCTCTCTCCCCATTCTTTGGAAGCGGAGTGAGAGAAGCTCCTGTTTTCTGTTAGTAGAGGATCAATTTTAAATAGTTCTTTGTGTCTGTTACAGTAGTTTAAAACAAAAGCTTCATTTTCACCCAACCTGCCAAAATTGACCCGTAACTGAATTACCCAGAGTCGAAAAAATATGACTAATATTGACCCGATCCAAACCAAATGACTCATAACCTGAATATGACCTAAACCAAACTGAATTTGATCCGAATTACCTGTTTGCCACCATTAATGTTCACCCCTTACTTCCGTTTACCATATATGTTAAGAGTTTTATAGAACTGTTAGTTTGGAGATCCAGTAGTCCGTTTTGTTCTCTTACTATGCTGTTTCTTCTGCATGATGTATTGATGTTAAAGGGATATAACTTATCATTTACTGGGTGCTTCGATGTTTTAAGTGCATATCCCTCTTTGGATCAGGTTTCAATGTGGAGACAGTCGAATACAATAACATAAGTTTTGCTGTGTGGGATCTTGGTGGACAAGAGAAGGTATTTGGATATGATTCTTTCCCTACTCTCCTCCCTTCCCCGGCTCCCCTTAATAAAGAAAACATAGAAGAAAGAGAGAGTAATTGACAGATCCTATCTTTTGTCTGAACATTCTTCATCAGACAACCTTTTCATATCTTTTGTGCTTTTGATGCTGTTGGCCATTACTTGCTCTTTTTTTCTCTAGGATTTTTTAAAATGGGCAAGAAGTGGTTTCTCTGTAACAAACCGTTGCAGAATGAGGGAACACAACTAACTTGTTATCTGTTACATAGATTCGGGCATTATGGAAACACTATTTTCGGAACACCCAAGGACTCATATTCGTTGTGGACAGCACTGACAGAGGAAGGATTATTGAAGCTCGTAATCAGCTTCACCGGATTCTTACTGAGGTTAAACATAGTTTTAATTTTTGATGGTACTCCTGTTTTTTTATCTTGATGATTATCATAAGCACGACTTGAATTTCTGACAGTATATCCTATGTTGATCTGTAGCAGGGTGAACTGTGTAATGCTGCAGTATTGATTTTTGCCAACAAGCAAGACCTTCCAAATGCTATGTCTGTCTCAGAGGTAGCTCAGAAGCTTGGGTTACATCTGCTTCGTGATCGCAGATGGTAAAACTTCATTCTTGATTGCTTAATGAAGTTACTAGACTCATCATCATCATCATCCTGATCGATCTCGTGTTTGTGTTGTAGGTTTATCCAGGATGCTTCTGCAATAACTGGCCGCGGACTTTATCAAGGTCTTGACTGGTTACATCAGAATATCTGTGACAAGCCTACACGATAGATGCCTTCCACCCAAAAATTTGCACAATTGATAGTAAAATACATACTAGTACACTGAGATTAAGGATGATAAGTTTTTAGTTTCATCTGAAAGATTGTAGCCAATGTAAAATTGTCTCATTTTTTCCCAGATATTTTTTTTATAGTTTCTCTGCATGACTGCATCGTCTGCATGGATAAAGGCAGCAGAACAAAGGCGAACATATCAGACCTCAGAACGATAAAGGATCCCTTCTAAATAATGTCTAAAACCTTTTCTAAAGTTGCATTTTAAAGCTTGGATATCTATTTTTTTGAGAGAAAAAGGCCTAAATAAAGATGATGATTCTTTTTTCTTTTTCAAAATTGATCATGTACACAGCCATGGAAGTTGATCTAGCTTGTTGTGTATTCCATTGTTGACATTTTTCTATTTTTTATTTTCGAACGCAAGTTTATAGTGAGTCTTGTCTAAATATTTTTTACTATTATTTTATAAATAAATTATTGTTAAGACTTCTCAAACTCAG ATGGGCGTAGGCACATCCCGTCTGATGAAGAGGCGGCTCTCTAAGCATCAGACCAAAATACTGATGGTTGGCCTCGACTCTTCAGGGAAGACAACAATCCTTTTCAAGCTCAAGCTCGGACAAGTTGTACGGACACTCCCCACGATAGGTTTCAATGTGGAGACAGTCGAATACAATAACATAAGTTTTGCTGTGTGGGATCTTGGTGGACAAGAGAAGATTCGGGCATTATGGAAACACTATTTTCGGAACACCCAAGGACTCATATTCGTTGTGGACAGCACTGACAGAGGAAGGATTATTGAAGCTCGTAATCAGCTTCACCGGATTCTTACTGAGGGTGAACTGTGTAATGCTGCAGTATTGATTTTTGCCAACAAGCAAGACCTTCCAAATGCTATGTCTGTCTCAGAGGTAGCTCAGAAGCTTGGGTTACATCTGCTTCGTGATCGCAGATGGTTTATCCAGGATGCTTCTGCAATAACTGGCCGCGGACTTTATCAAGGTCTTGACTGGTTACATCAGAATATCTGTGACAAGCCTACACGATAGATGCCTTCCACCCAAAAATTTGCACAATTGATAGTAAAATACATACTAGTACACTGAGATTAAGGATGATAAGTTTTTAGTTTCATCTGAAAGATTGTAGCCAATGTAAAATTGTCTCATTTTTTCCCAGATATTTTTTTTATAGTTTCTCTGCATGACTGCATCGTCTGCATGGATAAAGGCAGCAGAACAAAGGCGAACATATCAGACCTCAGAACGATAAAGGATCCCTTCTAAATAATGTCTAAAACCTTTTCTAAAGTTGCATTTTAAAGCTTGGATATCTATTTTTTTGAGAGAAAAAGGCCTAAATAAAGATGATGATTCTTTTTTCTTTTTCAAAATTGATCATGTACACAGCCATGGAAGTTGATCTAGCTTGTTGTGTATTCCATTGTTGACATTTTTCTATTTTTTATTTTCGAACGCAAGTTTATAGTGAGTCTTGTCTAAATATTTTTTACTATTATTTTATAAATAAATTATTGTTAAGACTTCTCAAACTCAG ATGGGCGTAGGCACATCCCGTCTGATGAAGAGGCGGCTCTCTAAGCATCAGACCAAAATACTGATGGTTGGCCTCGACTCTTCAGGGAAGACAACAATCCTTTTCAAGCTCAAGCTCGGACAAGTTGTACGGACACTCCCCACGATAGGTTTCAATGTGGAGACAGTCGAATACAATAACATAAGTTTTGCTGTGTGGGATCTTGGTGGACAAGAGAAGATTCGGGCATTATGGAAACACTATTTTCGGAACACCCAAGGACTCATATTCGTTGTGGACAGCACTGACAGAGGAAGGATTATTGAAGCTCGTAATCAGCTTCACCGGATTCTTACTGAGGGTGAACTGTGTAATGCTGCAGTATTGATTTTTGCCAACAAGCAAGACCTTCCAAATGCTATGTCTGTCTCAGAGGTAGCTCAGAAGCTTGGGTTACATCTGCTTCGTGATCGCAGATGGTTTATCCAGGATGCTTCTGCAATAACTGGCCGCGGACTTTATCAAGGTCTTGACTGGTTACATCAGAATATCTGTGACAAGCCTACACGATAG MGVGTSRLMKRRLSKHQTKILMVGLDSSGKTTILFKLKLGQVVRTLPTIGFNVETVEYNNISFAVWDLGGQEKIRALWKHYFRNTQGLIFVVDSTDRGRIIEARNQLHRILTEGELCNAAVLIFANKQDLPNAMSVSEVAQKLGLHLLRDRRWFIQDASAITGRGLYQGLDWLHQNICDKPTR Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo07389.1 vs. NCBI nr
Match: gi|902143725|gb|KNA04865.1| (hypothetical protein SOVF_195710 isoform A [Spinacia oleracea]) HSP 1 Score: 360.1 bits (923), Expect = 2.200e-96 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1
BLAST of Spo07389.1 vs. NCBI nr
Match: gi|902143726|gb|KNA04866.1| (hypothetical protein SOVF_195710 isoform B [Spinacia oleracea]) HSP 1 Score: 355.5 bits (911), Expect = 5.500e-95 Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 1
BLAST of Spo07389.1 vs. NCBI nr
Match: gi|731360237|ref|XP_010691702.1| (PREDICTED: ADP-ribosylation factor 1-like isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 317.4 bits (812), Expect = 1.600e-83 Identity = 150/180 (83.33%), Postives = 168/180 (93.33%), Query Frame = 1
BLAST of Spo07389.1 vs. NCBI nr
Match: gi|731360235|ref|XP_010691701.1| (PREDICTED: ADP-ribosylation factor 1-like isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 312.8 bits (800), Expect = 4.100e-82 Identity = 150/181 (82.87%), Postives = 168/181 (92.82%), Query Frame = 1
BLAST of Spo07389.1 vs. NCBI nr
Match: gi|870848862|gb|KMT01151.1| (hypothetical protein BVRB_9g224030 isoform A [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 305.1 bits (780), Expect = 8.500e-80 Identity = 144/172 (83.72%), Postives = 160/172 (93.02%), Query Frame = 1
BLAST of Spo07389.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QC77_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_195710 PE=3 SV=1) HSP 1 Score: 360.1 bits (923), Expect = 1.500e-96 Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 1
BLAST of Spo07389.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEA4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_195710 PE=3 SV=1) HSP 1 Score: 355.5 bits (911), Expect = 3.800e-95 Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 1
BLAST of Spo07389.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EDW9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g224030 PE=3 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 5.900e-80 Identity = 144/172 (83.72%), Postives = 160/172 (93.02%), Query Frame = 1
BLAST of Spo07389.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BJH9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g224030 PE=3 SV=1) HSP 1 Score: 300.4 bits (768), Expect = 1.500e-78 Identity = 144/173 (83.24%), Postives = 160/173 (92.49%), Query Frame = 1
BLAST of Spo07389.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C846_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127430 PE=3 SV=1) HSP 1 Score: 268.1 bits (684), Expect = 8.000e-69 Identity = 122/181 (67.40%), Postives = 151/181 (83.43%), Query Frame = 1
BLAST of Spo07389.1 vs. ExPASy Swiss-Prot
Match: ARF2A_ARATH (ADP-ribosylation factor 2-A OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=2) HSP 1 Score: 260.4 bits (664), Expect = 1.500e-68 Identity = 117/180 (65.00%), Postives = 147/180 (81.67%), Query Frame = 1
BLAST of Spo07389.1 vs. ExPASy Swiss-Prot
Match: ARF2B_ARATH (ADP-ribosylation factor 2-B OS=Arabidopsis thaliana GN=ARF2-B PE=2 SV=1) HSP 1 Score: 260.4 bits (664), Expect = 1.500e-68 Identity = 117/180 (65.00%), Postives = 147/180 (81.67%), Query Frame = 1
BLAST of Spo07389.1 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2) HSP 1 Score: 260.4 bits (664), Expect = 1.500e-68 Identity = 117/180 (65.00%), Postives = 146/180 (81.11%), Query Frame = 1
BLAST of Spo07389.1 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2) HSP 1 Score: 260.4 bits (664), Expect = 1.500e-68 Identity = 117/180 (65.00%), Postives = 147/180 (81.67%), Query Frame = 1
BLAST of Spo07389.1 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2) HSP 1 Score: 260.0 bits (663), Expect = 2.000e-68 Identity = 117/180 (65.00%), Postives = 148/180 (82.22%), Query Frame = 1
BLAST of Spo07389.1 vs. TAIR (Arabidopsis)
Match: AT1G10630.1 (ADP-ribosylation factor A1F) HSP 1 Score: 260.8 bits (665), Expect = 6.500e-70 Identity = 117/180 (65.00%), Postives = 147/180 (81.67%), Query Frame = 1
BLAST of Spo07389.1 vs. TAIR (Arabidopsis)
Match: AT1G70490.1 (Ras-related small GTP-binding family protein) HSP 1 Score: 260.4 bits (664), Expect = 8.400e-70 Identity = 117/180 (65.00%), Postives = 147/180 (81.67%), Query Frame = 1
BLAST of Spo07389.1 vs. TAIR (Arabidopsis)
Match: AT5G14670.1 (ADP-ribosylation factor A1B) HSP 1 Score: 260.4 bits (664), Expect = 8.400e-70 Identity = 117/180 (65.00%), Postives = 147/180 (81.67%), Query Frame = 1
BLAST of Spo07389.1 vs. TAIR (Arabidopsis)
Match: AT2G47170.1 (Ras-related small GTP-binding family protein) HSP 1 Score: 260.4 bits (664), Expect = 8.400e-70 Identity = 117/180 (65.00%), Postives = 146/180 (81.11%), Query Frame = 1
BLAST of Spo07389.1 vs. TAIR (Arabidopsis)
Match: AT1G23490.1 (ADP-ribosylation factor 1) HSP 1 Score: 260.4 bits (664), Expect = 8.400e-70 Identity = 117/180 (65.00%), Postives = 147/180 (81.67%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo07389.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo07389.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo07389.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo07389.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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