Spo07141.1 (mRNA)

Overview
NameSpo07141.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionCysteinyl-tRNA synthetase
Locationchr3 : 70140810 .. 70143037 (+)
Sequence length687
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCCTTCGTCCCTTTTTTAAAAACGAAAGCATACAAAAGGAAAGGGAGGCAAAAAAATCATAGATGCACTGGTCTTCGTGCATACATCGAGTACTCCCTCCGTCCCTTTTTTTTAAACCAAAGCATACAAAAGGAAAGGGACGCAAAAAAATCATAGCCTTAATTGTAAGCAATATGACCTTTTAATAAAATATATTTTAAGGAGTACTGTATTTTCTTACAAATTGAGAACTCTCAGTCCCTCCTCGGCTCTTACGCTGGTCAGACTATACATCATCCGAGACAAGGGAGAGTTAGGGTTTTGAGTTCGGAACTGTGCAACAATGGCAGAAGAAGAAAAATCGAAAACCTCTCCCTTTATGCTTTACAACTCCATGACAAAGCAGAAGGAAGTTTTTAAATCGAAGGTGAAGGGCGAGGTTAGCATGTATGTCTGTGGTGTCACTGCTTACGATTTCAGCCACATTGGCCACGCTCGTGCTTATGTCGCTTTCGATGTCCTCTACCGGTAATTTCTCCAATTTTTCTTTAATTTTGTAGATTTTTCTGTTGATTTTGATATTTCTGCGATTTTCGTGTTTTTGGTGTTAGATTGGGGTGAATTGAGAATTTTTTTCCGTTGACTTCGTTTCCATTTTCTGTTTTATTTTTTTATTTTTTATATATTGAGAATTGGATTTATTCGAGGGTCAAATCAATTTTTTATTTACTCAGTGGGAATGCTTTTATTTTTCATTTTCAAATTTGGTGATATAAGTTGTCTCTAGTACCAAGGGTGATTACTGAGAGTCGAATTCTGCAATTTGGAGCATTGCTGGAAAATAATTCATTTGGTATAAGTAATATTTGGTAATGAGATGTTATGTGTCATCGTATTTTCATTACCACATAGGTCTTATGTGTTAATGAAGATAAATGGTGCAAGACATATGCTTGGTGTGAATTTTGTAGGAATATTTGGCATGATACCTGGTGTTAAAAGAACAACCCTGATTATTCAAACCCACCAACTTGCCTCTATAAAGAACTTGTATTTACATGTTGTTAAGAACTTGAACTACTGCTTCAAATACTATAAGGATTCAGGAAGGATTGCTTGGGGAACTGTGATATCATGGGTATATTTGCTTATAGTCACCTGCAATACATCTAGTTACTTTCATGATCTTGCTGTGCAACAATAGGATGTGCATTTAAAGTGGACGATCAAAAATGTCCTTTGATGGTGTTGATACTATAAAGTTGGGGACCCCTTTGTTTTTTACCTTTTCATAGTGCCTTTTCTCCTTTCTTCGGTAGTGCGTAGTGGGAATACGGGATCTGTATTTAGTAACTATTCTGTTGTTTGTTGAATTTCGGTTTTAAAATGATAAATATATAGAATTTTAATATGATATATATCCATATGTTCATGCAGATACTTGATGGAATTGGGCTATAAAGTCACTTATGTTCGGAATTTCACTGATGTCGATGACAAGGTTAGAAAATGTTAGGTCTTTTATCTTTGATAGCTAGAAGGAGTTCTAAAAAACAGTAGTTGAAAAATATTTGCTTCATCTTTTTCAGCATTTTAATGAACTTTTGGTTGGGACTTTCACATAGACTCATACTTGGACGAATGTGATGCTATGTTTGCTAAACTAATTTTTGCATAAGAATTTTGTAGACTGCACCAATAATTAATGCATAATTGTAAGTCTCTCTTTATTTTATTGAAATGTAAGGTGAATTGGCTGAGGCAAATATTTCTGAGTTTAAATTTTTTAAGTTCTGCTTGGGTGCATAGTTGCATACAGAAGGCTTTAATTCTCAAGGAAAACATAAGTAAGGTACAAGTACAACTGATATTTGACTCTTTACTATTCTTAGGAGAGATCCTTCTAGTGCAGCTGCAGCCTGCAGGTATGTCAAATGGGTTTAGTCGAGTTGGTATTGGGTCAAATGATTTCAGGTTTGAGTTGGGCTTATTTTTGGGTCATGTTGAGCTTCTAGTGGGTTTTTTTGTATGTGTTACTGTGCGTGTGTGTGTGTGGTGGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGAAGGGGGTTAGGCTGAAAAGTCAGGTTCCAGACTGAATTTTCATGTGTTGCATAAGGCAGANGGGAAGGGGGTTAGGCTGAAAAGTCAGGTTCCAGACTGAATTTTCATGTGTTGCATAAGGCAGAAAGATAGGACGTGTTGTCTGA

mRNA sequence

CTCCCTTCGTCCCTTTTTTAAAAACGAAAGCATACAAAAGGAAAGGGAGGCAAAAAAATCATAGATGCACTGGTCTTCGTGCATACATCGAGTACTCCCTCCGTCCCTTTTTTTTAAACCAAAGCATACAAAAGGAAAGGGACGCAAAAAAATCATAGCCTTAATTGTAAGCAATATGACCTTTTAATAAAATATATTTTAAGGAGTACTGTATTTTCTTACAAATTGAGAACTCTCAGTCCCTCCTCGGCTCTTACGCTGGTCAGACTATACATCATCCGAGACAAGGGAGAGTTAGGGTTTTGAGTTCGGAACTGTGCAACAATGGCAGAAGAAGAAAAATCGAAAACCTCTCCCTTTATGCTTTACAACTCCATGACAAAGCAGAAGGAAGTTTTTAAATCGAAGGTGAAGGGCGAGGTTAGCATGTATGTCTGTGGTGTCACTGCTTACGATTTCAGCCACATTGGCCACGCTCGTGCTTATGTCGCTTTCGATGTCCTCTACCGATACTTGATGGAATTGGGCTATAAAGTCACTTATGTTCGGAATTTCACTGATGTCGATGACAAGGTTAGAAAATGAGAGATCCTTCTAGTGCAGCTGCAGCCTGCAGGTATGTCAAATGGGTTTAGTCGAGTTGGTATTGGGTCAAATGATTTCAGAAAGATAGGACGTGTTGTCTGA

Coding sequence (CDS)

ATGGCAGAAGAAGAAAAATCGAAAACCTCTCCCTTTATGCTTTACAACTCCATGACAAAGCAGAAGGAAGTTTTTAAATCGAAGGTGAAGGGCGAGGTTAGCATGTATGTCTGTGGTGTCACTGCTTACGATTTCAGCCACATTGGCCACGCTCGTGCTTATGTCGCTTTCGATGTCCTCTACCGATACTTGATGGAATTGGGCTATAAAGTCACTTATGTTCGGAATTTCACTGATGTCGATGACAAGGTTAGAAAATGA

Protein sequence

MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVTYVRNFTDVDDKVRK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo07141Spo07141gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo07141.1Spo07141.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07141.1.exon.1Spo07141.1.exon.1exon
Spo07141.1.exon.2Spo07141.1.exon.2exon
Spo07141.1.exon.3Spo07141.1.exon.3exon
Spo07141.1.exon.4Spo07141.1.exon.4exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07141.1.utr5p.1Spo07141.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07141.1.CDS.1Spo07141.1.CDS.1CDS
Spo07141.1.CDS.2Spo07141.1.CDS.2CDS
Spo07141.1.CDS.3Spo07141.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo07141.1.utr3p.1Spo07141.1.utr3p.1three_prime_UTR
Spo07141.1.utr3p.2Spo07141.1.utr3p.2three_prime_UTR


Homology
[Close]
BLAST of Spo07141.1 vs. NCBI nr
Match: gi|902171700|gb|KNA08032.1| (hypothetical protein SOVF_166310 [Spinacia oleracea])

HSP 1 Score: 168.7 bits (426), Expect = 4.400e-39
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL
Sbjct: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKV 85
          YRYLMELGYKVTYVRNFTDVDDK+
Sbjct: 61 YRYLMELGYKVTYVRNFTDVDDKI 84
[Close]
BLAST of Spo07141.1 vs. NCBI nr
Match: gi|951027794|ref|XP_014514261.1| (PREDICTED: cysteine--tRNA ligase 2, cytoplasmic [Vigna radiata var. radiata])

HSP 1 Score: 129.0 bits (323), Expect = 3.900e-27
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEEE      F +YNSMT+QKE+FK+K  G+VSMYVCGVTAYDFSH+GHARA V+FD+L
Sbjct: 1  MAEEE---LGGFRIYNSMTQQKEIFKTKTPGKVSMYVCGVTAYDFSHLGHARAAVSFDIL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVRK 87
          YRYL  LGY+VTYVRNFTDVDDK+ K
Sbjct: 61 YRYLKHLGYEVTYVRNFTDVDDKIIK 83
[Close]
BLAST of Spo07141.1 vs. NCBI nr
Match: gi|720067918|ref|XP_010276942.1| (PREDICTED: cysteine--tRNA ligase, cytoplasmic [Nelumbo nucifera])

HSP 1 Score: 129.0 bits (323), Expect = 3.900e-27
Identity = 60/73 (82.19%), Postives = 66/73 (90.41%), Query Frame = 1 

		  

Query: 12 FMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKV 71
          F +YN+MTKQKEVFK K  G+V MYVCGVT+YDFSHIGHARAYVAFDVLYRYL  LGY+V
Sbjct: 5  FQIYNTMTKQKEVFKPKEPGKVGMYVCGVTSYDFSHIGHARAYVAFDVLYRYLRHLGYEV 64

Query: 72 TYVRNFTDVDDKV 85
          TYVRNFTDVDDK+
Sbjct: 65 TYVRNFTDVDDKI 77
[Close]
BLAST of Spo07141.1 vs. NCBI nr
Match: gi|1021028726|gb|KZM86511.1| (hypothetical protein DCAR_023645 [Daucus carota subsp. sativus])

HSP 1 Score: 127.9 bits (320), Expect = 8.700e-27
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEE     +  ++YNS+TKQKEVFK +V G+V MYVCGVTAYD+SHIGHARAYVAFDVL
Sbjct: 1  MAEER----AELIVYNSLTKQKEVFKPRVPGKVGMYVCGVTAYDYSHIGHARAYVAFDVL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVRK 87
          +RYL  LGY+VTYVRNFTDVDDK+ K
Sbjct: 61 FRYLKHLGYEVTYVRNFTDVDDKIIK 82
[Close]
BLAST of Spo07141.1 vs. NCBI nr
Match: gi|571484891|ref|XP_006589683.1| (PREDICTED: cysteine--tRNA ligase 2, cytoplasmic [Glycine max])

HSP 1 Score: 127.9 bits (320), Expect = 8.700e-27
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEE+      F +YNSMT+QKE+FK+KV G+VSMYVCGVTAYDFSH+GHARA V+FD+L
Sbjct: 1  MAEEQ----GEFRIYNSMTQQKEIFKTKVPGKVSMYVCGVTAYDFSHLGHARAAVSFDIL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVRK 87
          +RYL  LGY++TYVRNFTDVDDK+ K
Sbjct: 61 FRYLKHLGYEITYVRNFTDVDDKIIK 82
[Close]
BLAST of Spo07141.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLB6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_166310 PE=3 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.100e-39
Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL
Sbjct: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKV 85
          YRYLMELGYKVTYVRNFTDVDDK+
Sbjct: 61 YRYLMELGYKVTYVRNFTDVDDKI 84
[Close]
BLAST of Spo07141.1 vs. UniProtKB/TrEMBL
Match: M0RY33_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.100e-27
Identity = 59/74 (79.73%), Postives = 69/74 (93.24%), Query Frame = 1 

		  

Query: 13 MLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVT 72
          +L+NSM+KQKEVFK++V+G+VSMYVCGVT YDFSHIGHARAYVAFDVLYRYL  LGY+V 
Sbjct: 7  VLFNSMSKQKEVFKTRVEGQVSMYVCGVTPYDFSHIGHARAYVAFDVLYRYLKHLGYEVK 66

Query: 73 YVRNFTDVDDKVRK 87
          YVRNFTD+DDK+ K
Sbjct: 67 YVRNFTDIDDKIIK 80
[Close]
BLAST of Spo07141.1 vs. UniProtKB/TrEMBL
Match: A0A164SR49_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_023645 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.100e-27
Identity = 63/86 (73.26%), Postives = 73/86 (84.88%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEE     +  ++YNS+TKQKEVFK +V G+V MYVCGVTAYD+SHIGHARAYVAFDVL
Sbjct: 1  MAEER----AELIVYNSLTKQKEVFKPRVPGKVGMYVCGVTAYDYSHIGHARAYVAFDVL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVRK 87
          +RYL  LGY+VTYVRNFTDVDDK+ K
Sbjct: 61 FRYLKHLGYEVTYVRNFTDVDDKIIK 82
[Close]
BLAST of Spo07141.1 vs. UniProtKB/TrEMBL
Match: A0A0B2PD34_GLYSO (Cysteine--tRNA ligase OS=Glycine soja GN=glysoja_035752 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.100e-27
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEE+      F +YNSMT+QKE+FK+KV G+VSMYVCGVTAYDFSH+GHARA V+FD+L
Sbjct: 1  MAEEQ----GEFRIYNSMTQQKEIFKTKVPGKVSMYVCGVTAYDFSHLGHARAAVSFDIL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVRK 87
          +RYL  LGY++TYVRNFTDVDDK+ K
Sbjct: 61 FRYLKHLGYEITYVRNFTDVDDKIIK 82
[Close]
BLAST of Spo07141.1 vs. UniProtKB/TrEMBL
Match: A0A0R0I6U8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G272400 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 6.100e-27
Identity = 61/86 (70.93%), Postives = 74/86 (86.05%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          MAEE+      F +YNSMT+QKE+FK+KV G+VSMYVCGVTAYDFSH+GHARA V+FD+L
Sbjct: 1  MAEEQ----GEFRIYNSMTQQKEIFKTKVPGKVSMYVCGVTAYDFSHLGHARAAVSFDIL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVRK 87
          +RYL  LGY++TYVRNFTDVDDK+ K
Sbjct: 61 FRYLKHLGYEITYVRNFTDVDDKIIK 82
[Close]
BLAST of Spo07141.1 vs. ExPASy Swiss-Prot
Match: SYCM_ARATH (Cysteine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYCO PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 6.200e-25
Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = 1 

		  

Query: 14  LYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVTY 73
           L+N+M+++KE+FK KV+G+V MYVCGVTAYD SHIGHAR YV FDVL RYL  LGY+V+Y
Sbjct: 67  LHNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLLRYLKHLGYEVSY 126

Query: 74  VRNFTDVDDKV 85
           VRNFTDVDDK+
Sbjct: 127 VRNFTDVDDKI 137
[Close]
BLAST of Spo07141.1 vs. ExPASy Swiss-Prot
Match: SYCC1_ARATH (Cysteine--tRNA ligase 1, cytoplasmic OS=Arabidopsis thaliana GN=At3g56300 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.000e-24
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          M+E E  K     LYN+MT+ KEV+K    G++ +YVCG+TAYD+SHIGHARA V+FD+L
Sbjct: 1  MSEMEVEKPD-LTLYNTMTQLKEVYKPMNPGKIGIYVCGITAYDYSHIGHARAAVSFDLL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVR 86
          YRYL  LGY+VTYVRNFTDVDDK +
Sbjct: 61 YRYLRHLGYQVTYVRNFTDVDDKAK 84
[Close]
BLAST of Spo07141.1 vs. ExPASy Swiss-Prot
Match: SYCC2_ARATH (Cysteine--tRNA ligase 2, cytoplasmic OS=Arabidopsis thaliana GN=At5g38830 PE=2 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 5.800e-23
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1 

		  

Query: 14 LYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVTY 73
          LYN+MT+QKEV      G++ +YVCG+TAYDFSHIGHARA V+FDVLYRYL  L Y VT+
Sbjct: 10 LYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSHIGHARAAVSFDVLYRYLKHLDYDVTF 69

Query: 74 VRNFTDVDDKV 85
          VRNFTDVDDK+
Sbjct: 70 VRNFTDVDDKI 80
[Close]
BLAST of Spo07141.1 vs. ExPASy Swiss-Prot
Match: SYC_DESMR (Cysteine--tRNA ligase OS=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) GN=cysS PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.200e-22
Identity = 49/73 (67.12%), Postives = 60/73 (82.19%), Query Frame = 1 

		  

Query: 14 LYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVTY 73
          LYN+MT+ KE F S+V G+V+MYVCG+TAYD  HIGHAR+ V FDVL RYL  +G+ VT+
Sbjct: 3  LYNTMTRTKEPFVSRVPGKVAMYVCGITAYDLCHIGHARSSVVFDVLVRYLRHIGFDVTF 62

Query: 74 VRNFTDVDDKVRK 87
          VRNFTDVDDK+ K
Sbjct: 63 VRNFTDVDDKIIK 75
[Close]
BLAST of Spo07141.1 vs. ExPASy Swiss-Prot
Match: SYC_PSEHT (Cysteine--tRNA ligase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=cysS PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.400e-21
Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 1 

		  

Query: 14 LYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVTY 73
          +YN++T+QKE FK  V+G++ MYVCG+T YD+ HIGHAR +V FDV+ RYL  +GY + Y
Sbjct: 4  IYNTLTRQKEQFKPMVEGKIDMYVCGITIYDYCHIGHARTFVGFDVIVRYLRHIGYDLKY 63

Query: 74 VRNFTDVDDKVRK 87
          VRN TDVDDK+ K
Sbjct: 64 VRNITDVDDKIIK 76
[Close]
BLAST of Spo07141.1 vs. TAIR (Arabidopsis)
Match: AT2G31170.1 (Cysteinyl-tRNA synthetase, class Ia family protein)

HSP 1 Score: 114.4 bits (285), Expect = 3.500e-26
Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = 1 

		  

Query: 14  LYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVTY 73
           L+N+M+++KE+FK KV+G+V MYVCGVTAYD SHIGHAR YV FDVL RYL  LGY+V+Y
Sbjct: 67  LHNTMSRKKELFKPKVEGKVGMYVCGVTAYDLSHIGHARVYVTFDVLLRYLKHLGYEVSY 126

Query: 74  VRNFTDVDDKV 85
           VRNFTDVDDK+
Sbjct: 127 VRNFTDVDDKI 137
[Close]
BLAST of Spo07141.1 vs. TAIR (Arabidopsis)
Match: AT3G56300.1 (Cysteinyl-tRNA synthetase, class Ia family protein)

HSP 1 Score: 110.5 bits (275), Expect = 5.100e-25
Identity = 54/85 (63.53%), Postives = 67/85 (78.82%), Query Frame = 1 

		  

Query: 1  MAEEEKSKTSPFMLYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVL 60
          M+E E  K     LYN+MT+ KEV+K    G++ +YVCG+TAYD+SHIGHARA V+FD+L
Sbjct: 1  MSEMEVEKPD-LTLYNTMTQLKEVYKPMNPGKIGIYVCGITAYDYSHIGHARAAVSFDLL 60

Query: 61 YRYLMELGYKVTYVRNFTDVDDKVR 86
          YRYL  LGY+VTYVRNFTDVDDK +
Sbjct: 61 YRYLRHLGYQVTYVRNFTDVDDKAK 84
[Close]
BLAST of Spo07141.1 vs. TAIR (Arabidopsis)
Match: AT5G38830.1 (Cysteinyl-tRNA synthetase, class Ia family protein)

HSP 1 Score: 107.8 bits (268), Expect = 3.300e-24
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1 

		  

Query: 14 LYNSMTKQKEVFKSKVKGEVSMYVCGVTAYDFSHIGHARAYVAFDVLYRYLMELGYKVTY 73
          LYN+MT+QKEV      G++ +YVCG+TAYDFSHIGHARA V+FDVLYRYL  L Y VT+
Sbjct: 10 LYNTMTQQKEVLIPITPGKIGLYVCGITAYDFSHIGHARAAVSFDVLYRYLKHLDYDVTF 69

Query: 74 VRNFTDVDDKV 85
          VRNFTDVDDK+
Sbjct: 70 VRNFTDVDDKI 80
The following BLAST results are available for this feature:
BLAST of Spo07141.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902171700|gb|KNA08032.1|4.4e-3998.8hypothetical protein SOVF_1663... [more]
gi|951027794|ref|XP_014514261.1|3.9e-2773.2PREDICTED: cysteine--tRNA liga... [more]
gi|720067918|ref|XP_010276942.1|3.9e-2782.1PREDICTED: cysteine--tRNA liga... [more]
gi|1021028726|gb|KZM86511.1|8.7e-2773.2hypothetical protein DCAR_0236... [more]
gi|571484891|ref|XP_006589683.1|8.7e-2770.9PREDICTED: cysteine--tRNA liga... [more]
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BLAST of Spo07141.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QLB6_SPIOL3.1e-3998.8Uncharacterized protein OS=Spi... [more]
M0RY33_MUSAM6.1e-2779.7Uncharacterized protein OS=Mus... [more]
A0A164SR49_DAUCA6.1e-2773.2Uncharacterized protein OS=Dau... [more]
A0A0B2PD34_GLYSO6.1e-2770.9Cysteine--tRNA ligase OS=Glyci... [more]
A0A0R0I6U8_SOYBN6.1e-2770.9Uncharacterized protein OS=Gly... [more]
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BLAST of Spo07141.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SYCM_ARATH6.2e-2573.2Cysteine--tRNA ligase, chlorop... [more]
SYCC1_ARATH9.0e-2463.5Cysteine--tRNA ligase 1, cytop... [more]
SYCC2_ARATH5.8e-2370.4Cysteine--tRNA ligase 2, cytop... [more]
SYC_DESMR2.2e-2267.1Cysteine--tRNA ligase OS=Desul... [more]
SYC_PSEHT1.4e-2160.2Cysteine--tRNA ligase OS=Pseud... [more]
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BLAST of Spo07141.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT2G31170.13.5e-2673.2Cysteinyl-tRNA synthetase, cla... [more]
AT3G56300.15.1e-2563.5Cysteinyl-tRNA synthetase, cla... [more]
AT5G38830.13.3e-2470.4Cysteinyl-tRNA synthetase, cla... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620coord: 30..85
score: 2.3
IPR024909Cysteinyl-tRNA synthetase/mycothiol ligasePRINTSPR00983TRNASYNTHCYScoord: 35..46
score: 1.6E-5coord: 71..80
score: 1.
IPR024909Cysteinyl-tRNA synthetase/mycothiol ligasePANTHERPTHR10890CYSTEINYL-TRNA SYNTHETASEcoord: 12..84
score: 1.6
NoneNo IPR availablePANTHERPTHR10890:SF10CYSTEINE-TRNA LIGASEcoord: 12..84
score: 1.6
NoneNo IPR availableunknownSSF52374Nucleotidylyl transferasecoord: 14..84
score: 2.22

GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006534 cysteine metabolic process
biological_process GO:0006423 cysteinyl-tRNA aminoacylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004817 cysteine-tRNA ligase activity