Spo06574.1 (mRNA)

Overview
NameSpo06574.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_03844 : 2 .. 5699 (+)
Sequence length618
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTTAATCATTCAAATTTAGAGCCAGCGACGTTAATGAAATATCTACCTCCACCCGAAAGATTTATACCACCATACAAAGTGTACTTGTTGGTGTCTTTTGGTGATCTTCTAATGGTCTCCCGACACAAACGGTGTATTAATGATGAAATTGAGGATGATCCGGATGATTTTTCTTATCAAACAATAGACTTTGAGGTATACAAACTCAATTTAGGCACTAAAAATTGGAAGCGTGTTTATGAGTTAGATGATGTTGCATTATTTGTGGGGGACAATACTTCTATGTCCGTTCGTGCATCAAACTTTAGTAATTGCAAGAGCAATTGTATTTACTTCACCGATGATGAGTGGCAATTTTGGGATACGTCGGAGGTTAAGGGGGGGGCATGATATGGGACTTTTCAACATGACAAACAAGAAGATCGAAACTATTTACGAAGGTGATGACATGCGTTCTACTTTCTGTACTGCTTTATGGTTCATGCCTATGTTCTAGTGAAATGTATTGTATCATCAAACCTTTTTAGTTTTTAGGTAACTTTAATAATTTGCTTAATGTTTATGGGCTAAGTTTGTTCTTTCCCCTTTTTGGCGTGTATCATTAATACTTTTGTGCCCCTTCCATAATTTGCTTTATGATTTTTTATTTTTTTCGGTTTGAAGCAATGTATGTACGGAGTATGATTAAGACTTTTTGTGTAACTCATTCAAATAACATCCATTTTATTTTTATTTAAATTGTACTTGATGTATGACTATTGAATTCTATTAAGTATTAACATGCCTTATCTGGTTAGAGCATCCATAAATCATGTTCATGTATATACGAGTATGTACGAACACGATACAATTTATACATAACCAACATAGATATGAAAATTAGTTGTCTCCACTATAATATAATTGTATAATCTGTAATGGAATGACAATATAAGCTCGTAAATGAAAAGAAACCCAACAAACAAAAGATCTTGAATCTTTGGCTGAATAGAAGAATGTTAGATCGGCATTGATATCAAGAAAACTGAACAACTCATTTTTGTGATTGATGTTCAAAATAGAAAATCTTACAACCTTTAAAAGTGAGGAGTTGAATTTTACTATTCATCCAATAGTGTAGTGATGGAACTGCCCTCAACTTCCTTCACAATTTCGTTTTTGCCCTCCTCCTCATATATTTCGCCTGAGCAAGCTCCTCGTAGCTTGCCTTCATTCTGTACTATCTTGCACCTCTCTCCTGATATTCAGCTCTTTTCTCTCTCCTCATTTTCTCTGCCATTCAAGCTCTTCATTTTCTAGGGTTCTAAACTTCCATTCCCTTCTTCATAATTCACTCCATCGAATACCAAACCACTCTAACTCCTAACTATCAATTTCAAATCGAAACTCTAAATTCTTAATTACAGAGTGACCGACGAACGATTTTTGGAAAATTAGGGTTTATGTTCTTCAGAAAAGGTCAGATCTTCGCGTGTTTTGACCAATTTAATGCTATTTTCGCTATTTTTGCTGATTGTTGATGAGATTCTGTATGGCCATGTCCCATCGAAGGTGTGTTTTCTTTTGTCATTATTTATCCAGGACTATGGATTTCGTTTCATATGATATATAGGTGAGGCCTCATTCTTGTGTATATTCTGCAGATCTGCTTTCCTCCTTTGCTCCTTCCCACTCGCTCGAACCAAATCCAACACCAGGTATCATCAATATTTCTTCATCTTTACATCATCAAGTGATTTCTAAGTTGTTAATCTGATTTTATTTAAGTATTAAATTAGAGTAATGTGTGTTGCAGAGATGAAGATTATTGCCGCTTGCTTGTTGGTTGCTTTGGGCGGTAAAGCTTGCACTACTGCCGGTGATGTCAAGAAATTTTTTGGATCAGGTATTTTTTCTCGTCTTTTTTTCATAATGGAGCTTGATTGATGAAGATAATATGTAAAATATTTATGGAGCTTGAGTAAGGGGGGGCTTGATATGGGACTTTTCAACATGACAAAGAAGAAGATCGAAACTATTTATGAAGGTGATGACGTACGTTCTATTTTCTGCACTGCCTTGTGGTTTATGCCTATGTTTTAGTGGGTTATTATTTTCATTTTTTATTAAGTATTGTATCATCAAATGTAACTTTAATAATTTGCTTAATGTTGATGGGCTAAGTTTGTTTTTTCTGCGTGTATCATTAATACTTTTGTGCCCCTTCAATAATTCTCTTTATTATATTTTTTTGGTTTGAAGCAATGTAGGCACGGAATATGATTAAGACTTTTTGTGTAACTTATTCAAATAAGATCCATTTTTCTTTTATTTAAATTGTACTTGATGTATGACTATTGAATTCTATTAAGTATTTACATGCCTTATCTTGTTAGAGCATCCATAAATTATGTTCATGTTATCATGTATATACGAAATTACGAGTATGTACGAACACGATACAATTTATACATAACCAACATAGATATGAAAATTAGTTGTCTCCACTGCAATATAATTGTATAATCTGCAATGGAATGACAATATAAGCTCCTAAATGAAAAGAAACCAAGCAAACAAAAGACCTTGAATCTTTGGTTGAACGAAAGAATGTTATATCAACATTGATATCAAGAAAACTGGACAACTCATTTTTACTTTGTTAGCATATTCAATCCTTGTCATTCATTAAGGTAAATGTTGTTGTTATCTGACAACTTGTTACGCCATTGGTTGAAAATCGAATTCAATTTGTTACTAAGATATATCATACATGACCTTATATGACTTTTGGACACTTAGAAGGTTCGAACTACCTTGATTTGCTCTTATGAAGGTTTGCATTTGCTTATATAGTGGAGCAACTTTTGATATCTCTTGCATTTGTTCAAATGACATGGTTCTGTCTTTTTATCACTTCTGTCATACTTGCTTCTTTACTTTATCATCTATGTATATATTGGTTAGATCGTTGAAGAAAGTAATAGGCCCGTTAGCATGGTTGTTGACCAAAATTAAGGGGTTGTGTGTTTCGTGGGTTGTTCTTTGTTGATAAAATAATATGTCATGTTTTGAAAACATATCATATTAATTTTGCTGTTTCTGAGATGGGAAGAATTGTCAGTTGGCCTGTGGCACTAGGTTCTGGTAGATTGCCTTCTATGATATAATTTAGGAGCTATTGTGCAGCCTGTGAAAATCTGGTGCAAGATCATGCGCTAATACCTGTTGTGTTGTTCTTAAAACTATAATGTATGCAATATATTGTCTGCATCACTGTTGACAACCTATTAGTTCATATTTGTATATTTGCATTTTCTCTTTACTGGTTTGGTTATTTTTGCTTGAAAGAATCAAATATAAAAATTGAACTAATGAGAGTGATATAATTATAAGGAGGCAATGTGACTAGAATTAATGAGGCTAAGAATTATATCTCTTGATGTCTTTGAACTTCAGATTATTGAGCAGACTATGAATTGCATGCATTGCTATTATTGATGTCTGATTTTATAGTCGTTTTGGACTCCTGTCCTGATGACCGTCTTTTAGTTTATTTACTTTGTAAAACCTAGGAGTGTATGTGGCATAGATGTTCAGGAGTAAAAATTATCTAACTGTAAGGCATGACCTAAGACAATCAGTTTGGGACAGGCAATAAAGAGATTGAAGAGAGATGATACGCATACAATGGGTGTATGTGTTGGACCACATACAAAACAATCTCAGCCGTTAGATTTAGATCTGTCCAAAATTTTAGGCGGGGAAAAAGGGTGATAGAAGGCGGTAAAATTTTGGGATTTTCCCGGGTAATAGAAGAACGCAGCGGGAAGTTTTGGCATGGGCGCCAAACTTCTGCATAGAAAAATTGGAAGCGTGTTAATGAGTTAGATGATGTTGCATTATTTGTGGGGGACAATACTTCTATGTCTGTTCGTGCATCAAACTTTAGTAATTGCAAGAGCAATTGTATTTACTTCACCGATGATGAGTGGCAATTTTGGGATGCGTCGGAGGTTAAGGGGGGGCATGATATGGGACTTTTCAACATGACAAAAAAGAAGATCGAAACTATTTATGAAGGTGATGACATACGTTCTGTTTTCTGCACTGCTTTTTGGTTTATGCCCATGTTCTAGTGAAATGTATTGTATCATCAAACCTTTTTAGTTTTTAGGTAACTTTAATAATTTGCTTAATGTTTATGGGCTAAGTTTGTTTTTTCCCCTTTTTGGCGTGTATCATTAATACTTTTGTGCCCCTTTAATAATTCGCTTTATGATTTTTTATATTTTTTCGGTTTGAAGCAATGTATGTACGGAGTATGATTAAGACTTTTTGTGTAACTCATTCAAATAAGATCCATTTTATTTTTATTTAAATTGTACTTGATGTATGACTATTGAATTCTATTAAGTATTAACATGCCTTATCTTGTTAGAGCATCCATAAATCATGTTCATGTATATACGAGTATGTATGAACACGATACAATTTATACATAACCAACATAGATATGAAAATTAGTTTTCTCCACTATAATATAATTGTATAATCTGTAATGGAATGACAATATAAGCTCGTAAATGAAAAGAAACCGAGCAAACAAAAGACCTTGAATCTTTGGCTGAATGGAAGAATGTTAGATCGGCATTGATATCAAGAAAACTGGACAACTCATTTTTGTGATTGATGTTCAAAATAGAAAATATTAGAAATGTAAAAACAATAGATGTATGCGTGTTCTAAGCGACCGATCTACCTGAAAAGTAGATGCCACGCTGTATAGTACTTCGTATATAGTAAGAAGAAGTAGAAACTAGATTAGGACGAGATAGTCTATATTTTAATAATAATTACCCAAATCTAGCTGCACACCAAGCTTATTGACCCACTTGGCCCAATAACTCAAGCCACAAGTATTCAAAAAAGTTACAAGATCAAACAATTTCTATAGTCTTGATCCTGAAAAGATGTGTTAATTGGCCAGGTGACGTTGCTACGAAAATTGATCTTAGGAGGAAGAAGCAAAAAAATAAAGGAAGAAATGCTTATTTTTAAATATTAGGAGGCTAGAGATACTTCATTTAAGAAATAAAATGATCGACAAATAGTCAGATCTATAACCCTTATAAACGCAACAACTTGAAGTTTGGAACAGTAACTTTACATGAACTACCAATTTTACCCCTACTTCGTTACCTTTGCCAGTTGCGTTCTATTCTCCTCTCCCTCGGTAACGATGCCCAACCTCCTCTCCCTCAGTAATGGCGCCCAACCTTCTTTGCCATATGTGATCTTCTCCTCTCCCTCAATAATTGCACCCAGACAAACTCACCAGCCAAGCCGTCTCAACCTCAACCACCGTCTCCGTCACCTCCTTGCCGACGTTGATGCGCGTTCCTTCTCCTTCTGTAGACCGAATAATGGTGGCCGACGGGGTAGGGCAGTGAAGAGTAGAAGTTTGTTGTTCTCTCTTCTTTGATTTTTCGTGCTCATTTTATCTTGCGAAATTTTACTAATTGAAATTGATTTATGTTGCTGAAATTGGTAGAGTTTTTTAATTTTAATTTTGATTTAGGATTTTGATTTAGGTTTTTTATTTTAGGTTTTTGATTTAGGATTTTGATTAGGTTTTTTATTTTAGGATTTTGATTTAGGTTCTTTATTTTGCTTTTGATTTAGGATATCTGGTTATTGGTGATGATTCTTGA

mRNA sequence

ATGCACTTAATCATTCAAATTTAGAGCCAGCGACGTTAATGAAATATCTACCTCCACCCGAAAGATTTATACCACCATACAAAGTGTACTTGTTGGTGTCTTTTGGTGATCTTCTAATGGTCTCCCGACACAAACGGTGTATTAATGATGAAATTGAGGATGATCCGGATGATTTTTCTTATCAAACAATAGACTTTGAGGTATACAAACTCAATTTAGGCACTAAAAATTGGAAGCGTGTTTATGAGTTAGATGATGTTGCATTATTTGTGGGGGACAATACTTCTATGTCCGTTCGTGCATCAAACTTTAGTAATTGCAAGAGCAATTGTATTTACTTCACCGATGATGAGTGGCAATTTTGGGATACGTCGGAGGTTAAGGGGGGGGCATGATATGGGACTTTTCAACATGACAAACAAGAAGATCGAAACTATTTACGAAGATCTGCTTTCCTCCTTTGCTCCTTCCCACTCGCTCGAACCAAATCCAACACCAGAGATGAAGATTATTGCCGCTTGCTTGTTGGTTGCTTTGGGCGGTAAAGCTTGCACTACTGCCGGTGATGTCAAGAAATTTTTTGGATCAGGATATCTGGTTATTGGTGATGATTCTTGA

Coding sequence (CDS)

ATGATGTTGCATTATTTGTGGGGGACAATACTTCTATGTCCGTTCGTGCATCAAACTTTAGTAATTGCAAGAGCAATTGTATTTACTTCACCGATGATGAGTGGCAATTTTGGGATACGTCGGAGGTTAAGGGGGGGGCATGATATGGGACTTTTCAACATGACAAACAAGAAGATCGAAACTATTTACGAAGATCTGCTTTCCTCCTTTGCTCCTTCCCACTCGCTCGAACCAAATCCAACACCAGAGATGAAGATTATTGCCGCTTGCTTGTTGGTTGCTTTGGGCGGTAAAGCTTGCACTACTGCCGGTGATGTCAAGAAATTTTTTGGATCAGGATATCTGGTTATTGGTGATGATTCTTGA

Protein sequence

MMLHYLWGTILLCPFVHQTLVIARAIVFTSPMMSGNFGIRRRLRGGHDMGLFNMTNKKIETIYEDLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTAGDVKKFFGSGYLVIGDDS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo06574Spo06574gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo06574.1Spo06574.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06574.1.exon.1Spo06574.1.exon.1exon
Spo06574.1.exon.2Spo06574.1.exon.2exon
Spo06574.1.exon.3Spo06574.1.exon.3exon
Spo06574.1.exon.4Spo06574.1.exon.4exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06574.1.utr5p.1Spo06574.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06574.1.CDS.1Spo06574.1.CDS.1CDS
Spo06574.1.CDS.2Spo06574.1.CDS.2CDS
Spo06574.1.CDS.3Spo06574.1.CDS.3CDS
Spo06574.1.CDS.4Spo06574.1.CDS.4CDS


Homology
[Close]
BLAST of Spo06574.1 vs. NCBI nr
Match: gi|902194110|gb|KNA12455.1| (hypothetical protein SOVF_125880 isoform A [Spinacia oleracea])

HSP 1 Score: 102.4 bits (254), Expect = 5.500e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

		  

Query: 65  DLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTAGDVKKFFGSG 114
           DLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTAGDVKKFFGSG
Sbjct: 200 DLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTAGDVKKFFGSG 248
[Close]
BLAST of Spo06574.1 vs. NCBI nr
Match: gi|902194111|gb|KNA12456.1| (hypothetical protein SOVF_125860 isoform B [Spinacia oleracea])

HSP 1 Score: 100.1 bits (248), Expect = 2.700e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 

		  

Query: 65  DLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTAGDVKKFFGS 113
           DLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTAGDVKKFFGS
Sbjct: 200 DLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTAGDVKKFFGS 247
[Close]
BLAST of Spo06574.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QYW7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_125880 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.800e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 

		  

Query: 65  DLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTAGDVKKFFGSG 114
           DLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTAGDVKKFFGSG
Sbjct: 200 DLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTAGDVKKFFGSG 248
[Close]
BLAST of Spo06574.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R0X0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_125860 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.900e-18
Identity = 48/48 (100.00%), Postives = 48/48 (100.00%), Query Frame = 1 

		  

Query: 65  DLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTAGDVKKFFGS 113
           DLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTAGDVKKFFGS
Sbjct: 200 DLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTAGDVKKFFGS 247
The following BLAST results are available for this feature:
BLAST of Spo06574.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902194110|gb|KNA12455.1|5.5e-19100.hypothetical protein SOVF_1258... [more]
gi|902194111|gb|KNA12456.1|2.7e-18100.hypothetical protein SOVF_1258... [more]
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BLAST of Spo06574.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9QYW7_SPIOL3.8e-19100.Uncharacterized protein OS=Spi... [more]
A0A0K9R0X0_SPIOL1.9e-18100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo06574.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06574.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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