Spo06535.1 (mRNA)

Overview
NameSpo06535.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionE3 UFM1-protein ligase-like protein
LocationSpoScf_00574 : 113462 .. 115582 (+)
Sequence length414
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGAAGAAATCAATGAAAGACTTCATGAATGCAGTCAGATTGCCGTGGCTGAGCTTGCTGCACAGTTACAAGTGGGTTCCGAGGTAATGCTTTCTTAAAAGATGGCAGTCAACAAACAATCCCCTTCCTTAATACTTGGTTGAACATCAAATTTGATGTGGGTTTTTGTGGATTTGCATCCATGTGTGGTGTCATGGCATGTAAATCAAAGGTATACTTGAAGGTGGACAATTGTATACTCTTGCTTGATTATGTTGCGCGTGTAAATGCAATGGTTCGTGGTGCTTCAAGGGGTATAATAGTTCCTACGAATTTGTCTGCCTTGTGCAGCGAATTGTTTTGCTTGTAACACGTAATTCATACGGAGTATATGACAATATGTTGTGTCATAATAAAAATATCCCTATATTTAATTTCTATTCATAATTATGTACATTTTTTTCATAATTATGTACATTTTTTTAATACTATTTAATTGTGTATTATAAATTTCTAATTATGTTAAATCATGTTGATATTAGTGTGTGACTGTGGGATTAAGAAAATGTATTGCAATAGAGTTTTAAGAAGAATTTCCCCTACGCTATTAACTATTGTTCTTGAACTTTTGAAATTATCTTAGTTGGTTTGTAGTAATATTCTTTATCATAGGACTGTAGATTATTTTTTTGGTGCGTACTTTTTTTAAGGTTCGAATGAATTAGGGGAATTTGAATATGTGACCTACCATCGTATGAATTAAGGGCGTCAATATTAATACATCCATACAGGTGAAGATCTTAGCATATGACCATATTCTATTTTTCTAACAAATATTTTTAGAAAAAACTCTAGCTAATCATAAACATCTAATTAATACGGAGTACTCTGTAATTATTAGCATTACTTTACCTTATTGGAAGGGGTAATCTTGATTGGACTATTGTCAAACTAAAGCCAAACACGTTATAGGAAGCAAACACCAAATTACAACAAAATAAGATTAAATGGAGATCAACAAAAATGATTAAATGGAGCCCAGTACGTAGGACCTAACTTTGAAGGTGATAAACTATCATCGTCATTTTTCATTAAGATAACGGAGTTGCTTAATAAATTAACTTAAAATATAGACTTCTATAATAATAAAAACTATGATACATTTATATCCTATGCGGTGCATGTTTGTTAAGTAAAATTATTGATAACCTACTCTATCTTTCCCTCTAAAAAGATTTACAATTATTGATAGTTTAATAATATTAATCCGTGCATCGCACGGGCTTCTATTCTAGTACTCCGTATAATTTCAGAGAATAAAATTAAAGTAGGATATCACCCGATCGTCATTGTTGTTAAGGGATGACTACTATCTAACTAAATTGATCTTTATGGTATATGGAATATTACCTCAACTACTTTTTGTTGGAAAAATTTATCTTCTACGCCTAGAAAGATAGGATAAATTTAGTCAAACAATAAGATAAATATTTGTCATTTAAAATAGGTACAAGCACCTTCCTAATGATAATGAAAGTATATCTTATTTGGCGTCTTATAACTGTACATGATAACTAACTTAGATTGGTATAATCTTTATTTTCAAATTGTGTTATCTTATCTTCCTTACTTATCTTTTATTTTATTTTATTTTTATTCTGTTATCTTATCTTTTTAGAAACGCCGAAAGTGTATCACTTTAAATATTGTTCAGCCATTAGCTTCAAAATATTTACTTGGAGTCCCCAAGGTTATTTTGAGGCATAATATGGAACCACTTCATGCTAAGCAAGCAAGGATGAACAGAATATTAATCAGAAGAGAAAAACGGCAAAGAGTAGCACATGAATCAGAGAGGCCAACCAATCAAACAAGAATTCCGTTGAGAGATATATCAAATGGTAAGTTCAATCACAATGTTAAAGTTTGAATAATTTTATATAAACAACTAAAAATTATAGTGTTTAATAAGGAATGTCGATTTACTACTATGAATAGGTTGTATATCTGGTGAATCAACCTCTATAGGTCGCCGTACCAAAGGAAATGTTGAAGGCACGTCAATTGATAAAAGTCAATTGAGCAAAACCAATTCAACCAATGGTTTTCATTTTTCTTCTAATGAATATCTATCCTAA

mRNA sequence

ATGGCTGAAGAAATCAATGAAAGACTTCATGAATGCAGTCAGATTGCCGTGGCTGAGCTTGCTGCACAGTTACAAGTGGGTTCCGAGCCATTAGCTTCAAAATATTTACTTGGAGTCCCCAAGGTTATTTTGAGGCATAATATGGAACCACTTCATGCTAAGCAAGCAAGGATGAACAGAATATTAATCAGAAGAGAAAAACGGCAAAGAGTAGCACATGAATCAGAGAGGCCAACCAATCAAACAAGAATTCCGTTGAGAGATATATCAAATGGTTGTATATCTGGTGAATCAACCTCTATAGGTCGCCGTACCAAAGGAAATGTTGAAGGCACGTCAATTGATAAAAGTCAATTGAGCAAAACCAATTCAACCAATGGTTTTCATTTTTCTTCTAATGAATATCTATCCTAA

Coding sequence (CDS)

ATGGCTGAAGAAATCAATGAAAGACTTCATGAATGCAGTCAGATTGCCGTGGCTGAGCTTGCTGCACAGTTACAAGTGGGTTCCGAGCCATTAGCTTCAAAATATTTACTTGGAGTCCCCAAGGTTATTTTGAGGCATAATATGGAACCACTTCATGCTAAGCAAGCAAGGATGAACAGAATATTAATCAGAAGAGAAAAACGGCAAAGAGTAGCACATGAATCAGAGAGGCCAACCAATCAAACAAGAATTCCGTTGAGAGATATATCAAATGGTTGTATATCTGGTGAATCAACCTCTATAGGTCGCCGTACCAAAGGAAATGTTGAAGGCACGTCAATTGATAAAAGTCAATTGAGCAAAACCAATTCAACCAATGGTTTTCATTTTTCTTCTAATGAATATCTATCCTAA

Protein sequence

MAEEINERLHECSQIAVAELAAQLQVGSEPLASKYLLGVPKVILRHNMEPLHAKQARMNRILIRREKRQRVAHESERPTNQTRIPLRDISNGCISGESTSIGRRTKGNVEGTSIDKSQLSKTNSTNGFHFSSNEYLS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo06535Spo06535gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo06535.1Spo06535.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06535.1.exon.1Spo06535.1.exon.1exon
Spo06535.1.exon.2Spo06535.1.exon.2exon
Spo06535.1.exon.3Spo06535.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo06535.1.CDS.1Spo06535.1.CDS.1CDS
Spo06535.1.CDS.2Spo06535.1.CDS.2CDS
Spo06535.1.CDS.3Spo06535.1.CDS.3CDS


Homology
[Close]
BLAST of Spo06535.1 vs. TAIR (Arabidopsis)
Match: AT3G46220.2 (unknown protein)

HSP 1 Score: 51.2 bits (121), Expect = 5.800e-7
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 1 

		  

Query: 1   MAEEINERLHECSQIAVAELAAQLQVGSEPLAS 34
           +AEEINERL ECSQIAVAELA QLQVGSE + S
Sbjct: 121 IAEEINERLQECSQIAVAELAGQLQVGSELVQS 153
The following BLAST results are available for this feature:
BLAST of Spo06535.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06535.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06535.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06535.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G46220.25.8e-781.8unknown protein[more]
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