Spo05814.1 (mRNA)

Overview
NameSpo05814.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 50199082 .. 50201286 (-)
Sequence length1001
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTGTTATTTAGTGATAAAGGGGGCATTTGAGGTGTTCTTTGGTGATTGCCCCACCCTGATTGGTATTTTTCTCAGCTCACACAAGACGTTTGGATGTCTTTTCCTTTTCTGGGCAGTTTGTTAGCTGATCAACTTGTGCTGTTGCCATCAAAGTGAGGCTGCCAAGTGCCAAGCAATATCATGGATTGATCTCCCAATGGTGTTGCTGCGAAATAGGCTTCTGGTCTCGGTTATAATCTGGGAAGTACATAGTAAATTGAAGTAGTTCACTTTCTAGGTTGGTATGCATATGTGCAGAGGGCCAGAATGTTCCGTATTTCCCCTATGAATTTGATGGATATGGTTGTTCGAAACACGTAAGAGAAAGATTTCTCCAACATATCCTTCTGCAAAATATGAGTTCTTTGTCTGCTGAAAGGTCAACAAAAGGTTGCAAAATGGTAATAACATCATAATTTGTGCTTCTTTTTGTTGCATCTCTATTTATTTTGGAATGAAGGCATTTTTAGGACTATACATACATGACTTTAGGTGCTGATTATTGTGATTATATACTCCCATCTTAGCTGTTTTGTTAAATGAGTCTCATTTTTGCATTAGTTAAGTTCTTTACTAAGATTAAGCCGTAGCATGTTTTATGATTGTTGCATCAACCTTTTCTGGCTGGGATTATATACCTTGTACTGATGAGTTCTGAACATTATAATCTGATGTATGCATGTAAGTGTATCTATTGTGAGACGTAGCTGTATTTGTTTTTGCAGCCTTGGACAGTTGGACGGGTTGATTTTCTTTTTTCACTTGAATTGCGATAGTTTACATACTTCGTATATTTTTTTTGTTTTCTATGGATGTTTGCTCATGATTACAATGCTTTTGTTTGCGATACAGAGTTGTAATGTATCTAATTGAATGGCTTCTGTTATGCTAGGCTGCTGGGAGGAAGAAAAGGCAGATGTGGTTGCTCCAACACCATTCATAATTTTAACACGCATCTCAATCGCTCCAAAGTCTGAAGGACCATATATATGGTATCAGCCTCAACAAGACCACAGCGACCTGCTGTATGTAAGTTTATTTTCAGCCCGAATGAGAATGTGACAACATATGTGGTGCAGGAGGGTATTAGAAAGAATAAAACCAGAGAGACCACGGTAAGAGTTTAGTAGTGTGATGAGAAAATGGAGAAGTGTCATATCATTTCACCTATTGCCTACCGAACTACCAATCCAGAATTTTTGTAATCCACATATTGTGCTATTTGGGGTTGTTGCCTTATCGGTTTTCTGCCATCCATTCAAAGGTTGATGAAAAAGACGGATCAAGATCGAGATGGATCAATATTACATCATCAACATTATCTTCCTAGAGATAATGTGGAAAAGGAGCAATATGTATGAGGTTAACTTGGCTGTTCCCTCCAATTATTATTGTTTAATCCACTGTTTGCTTACCTCAAGGGTTTTGGCTGTTCTTTAGTTATGGACAAAAAGTAAAGCTGATATGAGAAGCTTAAGCACCATGCTTTGTTATTGGTTAAAGTGTACCTGCACAACGAATGATTGTGGGTTTGAAGCGAACACTACGATCGTAGTTGAAGGTTGGAGTTGCAAAAGTTAAGATCATATATACTTTGGATGACCCGAGATTGATGGTGCTCGACAAAAGGCTAGTAGTGAAATACGGAATACCATATTTGGGAGACCCTCTACAATACATAATTAGTATGAAGAGGCTTCGAAGGGATACTAGTCCGGGATTAATATGCATCCCCTCCGCCTTCTAGCCACAGACTGGAAGCAAGCTATAGCAGAGTTAAATGTAAATGACAAAAATGAGCTTAGTACATATGTCCAACAACATTACTGATCGGATGCAGGGATTTGATGAACCAACTGAAAGGGACCACTCTTTATCTTTGATGGGAGGGAGGTAAACACCTTAGCTGATGCTCTGGATAAAGAAACAAGGAAGAAGATGCAGATCAACCATTAGATATCATTTTGGTCTCTCCTATATTTTGTATGGAATTATTTTGAAAGGCAAACAAGATTGTAATAGTAATTCTAGTACTGTTGATGTAACTAATCCTCCTACTGTGAGGGGAAACAATGTGACTAACCAAAACCCCGAAGTTTAAGTAATGAAGTGACAATTTCCCAAAAAAAAGAAAATAAAGCACAAAGGGATTAATATTCTG

mRNA sequence

ATGAGGTGTTATTTAGTGATAAAGGGGGCATTTGAGGTGTTCTTTGGTGATTGCCCCACCCTGATTGAGGGCCAGAATGTTCCGTATTTCCCCTATGAATTTGATGGATATGGTTGTTCGAAACACGTAAGAGAAAGATTTCTCCAACATATCCTTCTGCAAAATATGAGTTCTTTGTCTGCTGAAAGGTCAACAAAAGGTTGCAAAATGGCTGCTGGGAGGAAGAAAAGGCAGATGTGGTTGCTCCAACACCATTCATAATTTTAACACGCATCTCAATCGCTCCAAAGTCTGAAGGACCATATATATGGTATCAGCCTCAACAAGACCACAGCGACCTGCTGTATGTAAGTTTATTTTCAGCCCGAATGAGAATGTGACAACATATGTGGTGCAGGAGGGTATTAGAAAGAATAAAACCAGAGAGACCACGGTAAGAGTTTAGTAGTGTGATGAGAAAATGGAGAAGTGTCATATCATTTCACCTATTGCCTACCGAACTACCAATCCAGAATTTTTGTAATCCACATATTGTGCTATTTGGGGTTGTTGCCTTATCGGTTTTCTGCCATCCATTCAAAGGTTGATGAAAAAGACGGATCAAGATCGAGATGGATCAATATTACATCATCAACATTATCTTCCTAGAGATAATGTGGAAAAGGAGCAATATGTATGAGGGATTTGATGAACCAACTGAAAGGGACCACTCTTTATCTTTGATGGGAGGGAGGTAAACACCTTAGCTGATGCTCTGGATAAAGAAACAAGGAAGAAGATGCAGATCAACCATTAGATATCATTTTGGTCTCTCCTATATTTTGTATGGAATTATTTTGAAAGGCAAACAAGATTGTAATAGTAATTCTAGTACTGTTGATGTAACTAATCCTCCTACTGTGAGGGGAAACAATGTGACTAACCAAAACCCCGAAGTTTAAGTAATGAAGTGACAATTTCCCAAAAAAAAGAAAATAAAGCACAAAGGGATTAATATTCTG

Coding sequence (CDS)

ATGAGGTGTTATTTAGTGATAAAGGGGGCATTTGAGGTGTTCTTTGGTGATTGCCCCACCCTGATTGAGGGCCAGAATGTTCCGTATTTCCCCTATGAATTTGATGGATATGGTTGTTCGAAACACGTAAGAGAAAGATTTCTCCAACATATCCTTCTGCAAAATATGAGTTCTTTGTCTGCTGAAAGGTCAACAAAAGGTTGCAAAATGGCTGCTGGGAGGAAGAAAAGGCAGATGTGGTTGCTCCAACACCATTCATAA

Protein sequence

MRCYLVIKGAFEVFFGDCPTLIEGQNVPYFPYEFDGYGCSKHVRERFLQHILLQNMSSLSAERSTKGCKMAAGRKKRQMWLLQHHS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo05814Spo05814gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo05814.1Spo05814.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05814.1.CDS.3Spo05814.1.CDS.3CDS
Spo05814.1.CDS.2Spo05814.1.CDS.2CDS
Spo05814.1.CDS.1Spo05814.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05814.1.utr3p.2Spo05814.1.utr3p.2three_prime_UTR
Spo05814.1.utr3p.1Spo05814.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05814.1.exon.4Spo05814.1.exon.4exon
Spo05814.1.exon.3Spo05814.1.exon.3exon
Spo05814.1.exon.2Spo05814.1.exon.2exon
Spo05814.1.exon.1Spo05814.1.exon.1exon


Homology
The following BLAST results are available for this feature:
BLAST of Spo05814.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo05814.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo05814.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo05814.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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