Spo05535.1 (mRNA)

Overview
NameSpo05535.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr6 : 19041653 .. 19044165 (-)
Sequence length1492
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAACCATCTCTAAACAACACAATCTGAAAAGACATAAATACCCTCCGCACCACACCACTAGTACGGGGAGTATCCGTATTTGGCAATTGGCATTTAAGCGACCCCTCGGTCCCCTTTTTCTCCTCTCTCTCCTCAATCTGACAATGGCAGTATCAGTGGAGGCGGGAACTGCCGTTATCCTCACTCTCTCTCCTCCTCCTCTGACTGCCGCCAATTTCCGCCGCCGATTTCCTAAATCTCTGAGACAATCTTCGCTCTTTTCCGGCGTTTCTCTCACTATTCGCTCTCCAAATTTTCGCAATATCACTGTCTCTCAAAGGTCTAGCCAGGTACTGTGAATTTTTGAATTCCTTGTTACCATTGTTACTTGATTTTGTGATTTTTCAGGTGTGTTTTTGATTTTAGGGTTTCGCTGTCGTTTTTGGGAATAGAATTGAAGAATATGTGGTTAGAATGTGTCAATTGCTTGTGAAACTGGAAAAAAAAAAGTGTAGTTTCATTTGACGACTGAATTTTGTAAAATTTCATGTTTCTTTCTGAAGTCTTTGGTAATTCGTATTGTCGTAATGCATGTTATTAGCTTAAGATTAGCGATCGGTATGAAACTGTGAGAGTTATTCTCCTTATACTTGTGTTTGAACAGCTTTGGTCAAATGTTTCTTTTGCCAATAGTTTTCGATAAGCTCTTTATAAGCCTCCTTGTTGGAATCGAGTTCAATATGATCCATAGAAACCACATCCATGATTATTATGCAATAATGGAACATGTTAGCTTGTAATAGTAGGAACAGTACAGAATTTCCGTTATGTTTGTTATTATATTCGCTTAAGATCCAGGACGGTTGTGAAAGTGATGCTAGCTTATATCTATACCTGTTTGAACAACTTCCACTACACCTTGCCTTTGTCAATAGGTTTCAGTATGATCTCTATAAGCTTCCTTATCAGAATCGGGTTAGGATCCATAGGAACCATATCTAAATACGTTTCACCCATGATTTTAATGAATTAGTTGAATATCTTAACTTAAAATGACTGTGTGATTGGTGCCTGGTGGTGCTGGATGAGGTCATAAAATCGAACATGGTAGAAGATAATCTAGTCTATAATACATCCAGGTATCCACTTTGACTTCTTTTTTCATATTGGTGAAGAGTTTTGGTGTTGGTTGCACTTGAATTTTAATATGGCCAACTGACCATTTACTACTGAAGGCTGATGTGAGGAAGTCGGGAGTGGTATTTTGATAATGGAGGGAAGACAATGTTCCGTTCTTGGATAGTACAATATGTAAAGTGTGGCTGTAATCATGTTGCCTAAGGAATAATTGATTGGCCGGTTTTGTTTCAGGGGGATTTTTATGGAAGCAGCAAAGATCTTAGTTTGACACCTACACCGGTGTTAACATTTGCGAAAGGATTGCTGAAATTTGTGTTATCTAACTTTCTACCGCTAGGTAAGTTTCTCAACTCATTTGAAATTATTTAGAACTTATTTTAGTTATGTATTGAACTTTGGTGGCTTATCTGAACTTATTTCTTTTGAAAAATATTTTGTTCACATTTATGATCGTAACCTTGATTGAGTGAAATGTGAATTATGATGGCTGATTGTAGATTTCTGTACTGTTGTGTAACTTCTGTTTGTTGATCAATCCTAATAGATGAAACTTCCCTGCTGCTTAACAAGTTTAGGGACAATGATCTTTTTGGGATAATTTGCCCATGATGGCACTTCTTAGTCTTTGTGCAAGTCTTCATGCAGACATTTCAGCTGGTATTTCATTATAAAATGACAAATCTGGAAGTATCATTAATTGGTTTTGTTCTGCATGAGATACATTGCTTTCTTGTCAAGATATGAATTAAAAGTATGAAATACTATTGACTTTTCCCATTACTTTTTTGATGATTGCAACTTAACGATATGTATGTGTAGGCATTAAAAATGTCATAAATGCCACGTCATCATTTTTGTCCCGGAAAAGTCAAAGGTTGACTTATATTTATTAAAATGACAAGTAAACTAGTTAATTTGGGTTTTACACAAAACAAGCCCAATTTAATCAAATGACGTTCATTTAATGAATATGGGTTATTTAAACGGATCTAAGTAAACAGGCCCATTTAGTTATCAAAAGGAAAACCCTAAACCCAGAAGAATGATATAAAACGCTTAGTTTTAAAAAGCGCGAAGCGCACCGAAGCGCACAAGGGCCCTGGGGCTTAAGCGCAAAGCGCAAAGCGAAAGCGCACGCTTCTCGTAGGCGAAGCGCACCTTAAGTGCTAAAAACCTATAAAATCGTTTCTAGAACATATTTTGTACTTAAAACAACATACTACTTATATTATAAATGCATAAATTAACAAAGGGAAGCATAATTCATTACTAGACACCAAACCGGAATACCTCCAAGAGGGTAAAGTACTAACCAAAGACTTAGAGTAAGTCACGGGCTAACAAAAATCACAACCAGCATAAAACAAATAAGTAGAAAGACAGGAAAAAAAG

mRNA sequence

GTTAACCATCTCTAAACAACACAATCTGAAAAGACATAAATACCCTCCGCACCACACCACTAGTACGGGGAGTATCCGTATTTGGCAATTGGCATTTAAGCGACCCCTCGGTCCCCTTTTTCTCCTCTCTCTCCTCAATCTGACAATGGCAGTATCAGTGGAGGCGGGAACTGCCGTTATCCTCACTCTCTCTCCTCCTCCTCTGACTGCCGCCAATTTCCGCCGCCGATTTCCTAAATCTCTGAGACAATCTTCGCTCTTTTCCGGCGTTTCTCTCACTATTCGCTCTCCAAATTTTCGCAATATCACTGTCTCTCAAAGGTCTAGCCAGGGGGATTTTTATGGAAGCAGCAAAGATCTTAGTTTGACACCTACACCGGTGTTAACATTTGCGAAAGGATTGCTGAAATTTGTGTTATCTAACTTTCTACCGCTAGGTAAGTTTCTCAACTCATTTGAAATTATTTAGAACTTATTTTAGTTATGTATTGAACTTTGGTGGCTTATCTGAACTTATTTCTTTTGAAAAATATTTTGTTCACATTTATGATCGTAACCTTGATTGAGTGAAATGTGAATTATGATGGCTGATTGTAGATTTCTGTACTGTTGTGTAACTTCTGTTTGTTGATCAATCCTAATAGATGAAACTTCCCTGCTGCTTAACAAGTTTAGGGACAATGATCTTTTTGGGATAATTTGCCCATGATGGCACTTCTTAGTCTTTGTGCAAGTCTTCATGCAGACATTTCAGCTGGTATTTCATTATAAAATGACAAATCTGGAAGTATCATTAATTGGTTTTGTTCTGCATGAGATACATTGCTTTCTTGTCAAGATATGAATTAAAAGTATGAAATACTATTGACTTTTCCCATTACTTTTTTGATGATTGCAACTTAACGATATGTATGTGTAGGCATTAAAAATGTCATAAATGCCACGTCATCATTTTTGTCCCGGAAAAGTCAAAGGTTGACTTATATTTATTAAAATGACAAGTAAACTAGTTAATTTGGGTTTTACACAAAACAAGCCCAATTTAATCAAATGACGTTCATTTAATGAATATGGGTTATTTAAACGGATCTAAGTAAACAGGCCCATTTAGTTATCAAAAGGAAAACCCTAAACCCAGAAGAATGATATAAAACGCTTAGTTTTAAAAAGCGCGAAGCGCACCGAAGCGCACAAGGGCCCTGGGGCTTAAGCGCAAAGCGCAAAGCGAAAGCGCACGCTTCTCGTAGGCGAAGCGCACCTTAAGTGCTAAAAACCTATAAAATCGTTTCTAGAACATATTTTGTACTTAAAACAACATACTACTTATATTATAAATGCATAAATTAACAAAGGGAAGCATAATTCATTACTAGACACCAAACCGGAATACCTCCAAGAGGGTAAAGTACTAACCAAAGACTTAGAGTAAGTCACGGGCTAACAAAAATCACAACCAGCATAAAACAAATAAGTAGAAAGACAGGAAAAAAAG

Coding sequence (CDS)

ATGGCAGTATCAGTGGAGGCGGGAACTGCCGTTATCCTCACTCTCTCTCCTCCTCCTCTGACTGCCGCCAATTTCCGCCGCCGATTTCCTAAATCTCTGAGACAATCTTCGCTCTTTTCCGGCGTTTCTCTCACTATTCGCTCTCCAAATTTTCGCAATATCACTGTCTCTCAAAGGTCTAGCCAGGGGGATTTTTATGGAAGCAGCAAAGATCTTAGTTTGACACCTACACCGGTGTTAACATTTGCGAAAGGATTGCTGAAATTTGTGTTATCTAACTTTCTACCGCTAGGTAAGTTTCTCAACTCATTTGAAATTATTTAG

Protein sequence

MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRSSQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPLGKFLNSFEII
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo05535Spo05535gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo05535.1Spo05535.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05535.1.utr5p.1Spo05535.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05535.1.CDS.2Spo05535.1.CDS.2CDS
Spo05535.1.CDS.1Spo05535.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05535.1.utr3p.1Spo05535.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo05535.1.exon.2Spo05535.1.exon.2exon
Spo05535.1.exon.1Spo05535.1.exon.1exon


Homology
[Close]
BLAST of Spo05535.1 vs. NCBI nr
Match: gi|902230667|gb|KNA21938.1| (hypothetical protein SOVF_038660 isoform B [Spinacia oleracea])

HSP 1 Score: 184.5 bits (467), Expect = 9.700e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

		  

Query: 1  MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS 60
          MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS
Sbjct: 1  MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS 60

Query: 61 SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL 98
          SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL
Sbjct: 61 SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL 97
[Close]
BLAST of Spo05535.1 vs. NCBI nr
Match: gi|731349505|ref|XP_010686026.1| (PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 125.9 bits (315), Expect = 4.100e-26
Identity = 68/97 (70.10%), Postives = 78/97 (80.41%), Query Frame = 1 

		  

Query: 1  MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS 60
          MAVS+EAGTAVILTLSPPP+ A  FRRRF  SL +SSLFSG SL+ R+ N R  +VSQR 
Sbjct: 1  MAVSMEAGTAVILTLSPPPIPAI-FRRRFQNSLGKSSLFSGTSLSTRTSNLRIFSVSQRP 60

Query: 61 SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL 98
          SQGDFYG S D++LTP  VLTFAKGLLKF+ +N LPL
Sbjct: 61 SQGDFYGGSNDVTLTPVSVLTFAKGLLKFIFANLLPL 96
[Close]
BLAST of Spo05535.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RR44_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_038660 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 6.800e-44
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

		  

Query: 1  MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS 60
          MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS
Sbjct: 1  MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS 60

Query: 61 SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL 98
          SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL
Sbjct: 61 SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL 97
[Close]
BLAST of Spo05535.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BWH2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g176210 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.900e-26
Identity = 68/97 (70.10%), Postives = 78/97 (80.41%), Query Frame = 1 

		  

Query: 1  MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS 60
          MAVS+EAGTAVILTLSPPP+ A  FRRRF  SL +SSLFSG SL+ R+ N R  +VSQR 
Sbjct: 1  MAVSMEAGTAVILTLSPPPIPAI-FRRRFQNSLGKSSLFSGTSLSTRTSNLRIFSVSQRP 60

Query: 61 SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL 98
          SQGDFYG S D++LTP  VLTFAKGLLKF+ +N LPL
Sbjct: 61 SQGDFYGGSNDVTLTPVSVLTFAKGLLKFIFANLLPL 96
The following BLAST results are available for this feature:
BLAST of Spo05535.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902230667|gb|KNA21938.1|9.7e-44100.hypothetical protein SOVF_0386... [more]
gi|731349505|ref|XP_010686026.1|4.1e-2670.1PREDICTED: probable sodium/met... [more]
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BLAST of Spo05535.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
Match NameE-valueIdentityDescription
A0A0K9RR44_SPIOL6.8e-44100.Uncharacterized protein OS=Spi... [more]
A0A0J8BWH2_BETVU2.9e-2670.1Uncharacterized protein OS=Bet... [more]
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BLAST of Spo05535.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo05535.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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