Spo04698.1 (mRNA)

Overview
NameSpo04698.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 36945477 .. 36948601 (+)
Sequence length452
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATACTAGTAATTTACTTAGTTTTGATTATTAACACATGTTAGTGTTTTGATTTTTCACATATTTCACTACAAAAAGTATCCCAAACATAGTGAAAAAGAATAAATTTTTATGATATGTTTGGATTGATGGTATTACGAAGTAATAAAAGTCAAAATAAAGAAAAATATGGTGATTTTGACTTGAATTTGGGATTGAAGCTTAAATGCATATTGGTAACAGGAAGAGAAAAGTGACTTGTTATACAACGGCATAAGATTTAACAAAAACGTTCTAATTTACCATGAACTTCCCACTATACCCTTATTAGATTTTTTTCCCAATTACCTGCCCCTTTACCTCCTTTACTGACTCTCTCCTCATCTATAGTTTTCTCTCTCCTTTCACTCTCTCTCCTCACCTTCACTGATAATCCGGCACCACTGTTATTGTCCACCGTCCTCCATCGGCGCTGCCCTTCGAAGTTACCTTGCTTGCTCATGTTCTCTCCTCTTCAAAGATCTAACCATTACAATTGAAGTCGTTGCTTGTTCCTACCTCCGCGGACTATATGTCGAAGGGATTTGAATTCTCCAGTTCCAACCACCGCCAACCATCGCTCCAGCCAACGATGCTCGTCAAGCCGCCTAACTAGCGTCTCCTCTTCTGTTCAAAGGTTTATTTAATTTTGCTTTCTTTTTGATTTATATATTTCTCAATAAAGATCCTCAATTTCTGAAATTGGATTCATATGGTGAAGGGTTCTTCGTATTTGTTGGAGATGAATCAAATAGTTGGATAGGCGTGAAAGGTGTGGTTGTCAAAGCCCCAAAGGTACTGTTCTTCCCATGGTTGTTTTGAATCTGTAAAATTCAGCAATGGTGAAGAACGAGAATGAGACTATGGTTGATCTAGTCTTGCCCTAGGGTAAGACTGTGTTAGATGTAGTCTGTTCAATGTTTAGACTCAACTAAAGCTAGTATTCCCTTGGGACCTGACTAGTTTTTTGGCAAGAATAAGACTAGAGCTGGTCTTATCTTGCCCGTAGGTCAGACTTTGTTAGACCTAGTCCTGTCAATGGTTAAGACTCAATTTACCTTAGTCTCCCCTTAGGGCCTAACTGAGTTTTGGCTAGTCCCGTTTGTATTGTTGGTGTAGTTGTAATAATAATAGAAATAAGGTTGAGAGTTTTAAAACTTTAATCATATCTGCAAAATTTCATACCTTATGAGCTTTAGTATTGAGTGTTAAATACATATGCTCTGAAATAACCTTTTAGGGATGCAAAATTCATAATTGTCTATGTTGGGATTTAATGAATAATTTTGTAGATTATTCATGTCAATTTTAAATTATTGTCACCACCTGACATATAATATGGAAATTGTGCATAACTGTTAAAAGTATATATAACATTTGGGAAGTTAATAGTAATTATTGGTATTAGGATTTACGAAAGTATATACATTTAGGAAGTAAAATATATAGATTGAATGATGGTTGATGGTGATGCACTAGCTAGGTTGAATGATTCTTTCTTTTGGAGAATTGGTTGTGACTTTGAACAAAAAAAAGAGAGAAAAGGTCTTATAATAAAATGAGTTCAGTTTCCAAGTACCATATTGAATTGCTGGTTGGCTATGATCTTTGAAAAATCTGAGTGAAGACCTAACATCTGATGTGAGCTAAGGATTACTAATTTGCCATTAGTAAAACCAGATGTGTAGTGTAACTCATGAATGAACTTATTTATTACATGACAAATTCATCTCCCTTGTATCCAACCTAAAGTAGTACCCAATAATCTTAATGTTATTTCTTTAAAATTTTGAATATAAATGAATTTCAAGATGCTTCCGTAGATGTGGTTCTTTTACTATCTGTTGTGAATTAGCATAACTGGAAAATTTAGAGGAAGAAACTTAGATTGATAATTCTGGAAATACAATATCAAAGTATAGGTATCAAGTTGTGTTTCACTCCAAAAGAGTTATACCAGACTAAGATAACAATTCAATTTTGGATATCCCCTCTTTCCCTTCTTTTCTGTATATATTGTATTGTTCATTCCCGTTTCATTCTGTTTCCTCTAATTTGTTTTATGTCATGTTCTTCAAGTATCTCAACTGATTCATAATGCAAATCTAGCTACACCCCTCCTAAGTGTGGTTCATTACGTTACTGGTCGTCCAAAAGATTGATAATGATAATTGTTGTAGCGATTATTTATAGTCTAGACATGCCTTGTAACAACAAGGACTTAGTTAACCTGGAAAAAATAATCAAACAAATTGCCATATTAAAAGGCAACTAGGCAGTAGTGATTGTTGGAGTCTTCTACCTCTTGTGTAAATAGCTGATAATTTTGAGCATAAAAAAAATGGTAAGAAAATATATAATTTGCTCTTTAACGCATATTGCATATGCACGAGCATGCATTTTAGTGAGCCTATTTTTTTCTCAGTAGTTGAATCCTTCTCTAAAACACCATTAAGACTCACTTACAAGTACGAGTAAAATCCACCTTATTTCTTAGTGCTAATACGTTTTTTACGAGATGCATTTGCAGCTTGTTTTCATATTTTTATCGTAAATACTTCATGCTAATAACTCCAGTTTCATGAAATATCCTTTTATGTTCAATCTGTTGGTCTTTATGTCATGGAGCTAACAATATTTTTCTTTCTTTTTTTGACAAAAAGAGATGACAACTAAGGGTAAGAAATATGGAAAAGGGAAAAGTGCAATAAAAAGGGAGAAACTTTCAGCTAAGAATGTTGCATCTAAGAAGGATGTCGCTACACAGGACTCTGGACCACGACATCCTGGTAAGCGAGGTTTGCTAGCCTCCGAGAGAAGGAAGCGTTCACGGGCGACTATTGTGAAAGGACATTTGCAAGCTTTTGTTTTTGTATTTTGTCGAATGGCCATTTCCAAATCTTTGCAGGCATTATTATATCAGCCACCACGTTTGCATTTAAAGTAAATACGTAAGGGGCCTCCACCATTTTTCTTATGGGATGTTGTAATAATTTCAAAACCTTGTTGAATTGCAATATCTTTAGTCCATTCAAAAGCCGCATTTCGAGTAGCAAAACTTTGATTAGTTTCAAAATAAGAACTACAGTTAAATTCCATCTCCAC

mRNA sequence

ATGAATACTAAGATGACAACTAAGGGTAAGAAATATGGAAAAGGGAAAAGTGCAATAAAAAGGGAGAAACTTTCAGCTAAGAATGTTGCATCTAAGAAGGATGTCGCTACACAGGACTCTGGACCACGACATCCTGGTAAGCGAGGTTTGCTAGCCTCCGAGAGAAGGAAGCGTTCACGGGCGACTATTGTGAAAGGACATTTGCAAGCTTTTGTTTTTGTATTTTGTCGAATGGCCATTTCCAAATCTTTGCAGGCATTATTATATCAGCCACCACGTTTGCATTTAAAGTAAATACGTAAGGGGCCTCCACCATTTTTCTTATGGGATGTTGTAATAATTTCAAAACCTTGTTGAATTGCAATATCTTTAGTCCATTCAAAAGCCGCATTTCGAGTAGCAAAACTTTGATTAGTTTCAAAATAAGAACTACAGTTAAATTCCATCTCCAC

Coding sequence (CDS)

ATGAATACTAAGATGACAACTAAGGGTAAGAAATATGGAAAAGGGAAAAGTGCAATAAAAAGGGAGAAACTTTCAGCTAAGAATGTTGCATCTAAGAAGGATGTCGCTACACAGGACTCTGGACCACGACATCCTGGTAAGCGAGGTTTGCTAGCCTCCGAGAGAAGGAAGCGTTCACGGGCGACTATTGTGAAAGGACATTTGCAAGCTTTTGTTTTTGTATTTTGTCGAATGGCCATTTCCAAATCTTTGCAGGCATTATTATATCAGCCACCACGTTTGCATTTAAAGTAA

Protein sequence

MNTKMTTKGKKYGKGKSAIKREKLSAKNVASKKDVATQDSGPRHPGKRGLLASERRKRSRATIVKGHLQAFVFVFCRMAISKSLQALLYQPPRLHLK
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo04698Spo04698gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo04698.1Spo04698.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04698.1.exon.1Spo04698.1.exon.1exon
Spo04698.1.exon.2Spo04698.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04698.1.CDS.1Spo04698.1.CDS.1CDS
Spo04698.1.CDS.2Spo04698.1.CDS.2CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo04698.1.utr3p.1Spo04698.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo04698.1 vs. NCBI nr
Match: gi|902211453|gb|KNA16711.1| (hypothetical protein SOVF_086600 [Spinacia oleracea])

HSP 1 Score: 92.4 bits (228), Expect = 4.600e-16
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 1 

		  

Query: 5  MTTKGKKYGKGKSAIKREKLSAKNVASKKDVATQDSGPRHPGKRGLLASERRKRSRATI 64
          MT+KGKK+GK KSAI REKLSAKNVASKKDVAT+DSGPRHP KRGLLA+ERRK S ATI
Sbjct: 1  MTSKGKKHGKRKSAITREKLSAKNVASKKDVATEDSGPRHPRKRGLLATERRKLSHATI 59
[Close]
BLAST of Spo04698.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RB38_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_086600 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.200e-16
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 1 

		  

Query: 5  MTTKGKKYGKGKSAIKREKLSAKNVASKKDVATQDSGPRHPGKRGLLASERRKRSRATI 64
          MT+KGKK+GK KSAI REKLSAKNVASKKDVAT+DSGPRHP KRGLLA+ERRK S ATI
Sbjct: 1  MTSKGKKHGKRKSAITREKLSAKNVASKKDVATEDSGPRHPRKRGLLATERRKLSHATI 59
The following BLAST results are available for this feature:
BLAST of Spo04698.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902211453|gb|KNA16711.1|4.6e-1684.7hypothetical protein SOVF_0866... [more]
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BLAST of Spo04698.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RB38_SPIOL3.2e-1684.7Uncharacterized protein OS=Spi... [more]
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BLAST of Spo04698.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo04698.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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