Spo03986.1 (mRNA)

Overview
NameSpo03986.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 47278914 .. 47281393 (-)
Sequence length1243
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCGTGAAACACGTGCTCTATCTATTGAGAAGGAATTGGATAAGAGTGAGTGAGGGAGTGAGTGAACAAATTGAGTGGTTAGTGGTTGAGCAAATAATCAGAGATTCAGAGATGGCGAAATTTCCATTAACCTTAACCTTCTTCATCGTGGTCATTTCAGCTCTGCTTTTGCTCACTCAATCAGGTTCAATTCTCTCTTTTTCTTCGTTCCGTTCATTTGTTTGAACTCGTTCCGTTTTCTTTTGATGTAACTGTTTAGACTATGAGTCGAGACTCTCACTAAACTACTCGGGCTCAGCTAAAGCTCGTGATGTTCGTTTATTTAATAACTGTTTAGACATGAACATATGTAGCTCGTTCATTTAAGTTCATGAAGAACTCGTTTATTTATGTTCATGAACAACTCGTTTTATTTTATGTTCATGAACAAGCTCATTCATGTTCATAATCAAATTTGTCATATATAATTGATTCATTTTAGGTAAAAATCATATTTTTAACTTTTAACATCCAAAGATAATGTCATGGAATAAATTTTTTAAAAATTGAATTTGAATTGCTAAATTAATGCACATTTCAAATTATGTTTTCAAACAAGTTAAACTCTAAAGAGCAAAAATCGTTTATAAAAAGCCCGTTTAAGAATAAAAAACATGTTTATGAACTCGATTCGATTCATAAACGAGACGTTCACGAACCGTTTATGGACACAAAATCTGTTAAACGAACCGAGCTTTAACATGTTTTTGAGCTCGGTTGAGAGCTCGGGCTCGCTTAAATTAAATGAACATAACATGAACAGTGTAGAACTCGGCTCGACTCGGCTTGTTTGCACCCCTATGTTTAGTGTAGACTCTTGTTTCTAGGCGAACTAGTTCACACATCTTGATTGGTGTATTATTCCTCGAAAAGAGACTTAGTTAGGTACATGTATGTTATGTTTTTATAGGTGAAACATTTGCTAAGAAGACAAATGTAGAGGATGAACTAGGGAGTGGAAGCTTATTAATGCAAAAATTGATAGAGGCAGAAACAAAAACATTAGTATTGGTCAAAGAAATAGAAGAAGATGCAAGTTTAGAAGATCAGTTGAAGTGTATACCTTGTGGTGCAGCCTGTGTTTCATCGAGAAACTGCTGTAGGAACTGTTATTGCCTTATCAAATGGGAGATTGTTATACCTCGATGCGTTCGGAAAATACCATCTCATCAACTTAATTAGAGTTTAGTACTTAAACTACCATGATTTCATGTAATAATGCGGCGAGTCTAAGTAGGTTTCTTAATTAACAACAATGTCAGCTTATTCTCTGAATTTGCTCACTGTTTCATGTAATTCAGTCTCAGTACTGTATTTATAATAAGAACACAGAGATATTGTTCCTGCATTATGGTATAATAATAAGCATGTGTGTTATGTAGGAGAAACCTTTACTGATGAGAAGATAAAGGTGGCTAGAGAGGAAGAAAATGGAAGCTTACTTAAGCAGCTGCTTGAAGCAGAAGCAGTTCTGCAACTGCATGATGTTCGTGAGCCGTCAGAGTTTCAGGAACAGGATGAGTCTTCATCAACATCAACCAAGTTGAAGTGCACTCAATGTGGTGGAGATTGTTCATCCTGGAATGAGTGTTGCGAACCATGTCGTTGTGTACTTAACTCGTGCCTGTACCTACCCAACAGGGGAATTATGCTCAATGCAGAGTGACTGTAAACATGCTCCATCAATAAAATCTGAAGCTACCTTGAATAACAGAAAATCTATGCAGAAACGCGCATAACATGGATATTCATTCAACATTGTTATTACTTGCAAAATTACATAAAACTCATTGCTTTCACTGCCTACCAAACGGGTTGCTACAATATCGGAGAGCAACACGTGCTGCTTAATATTACATACACGATACACCAAACGAACCAAAAGCACTAGAACTGAACAACTTTCCTGGGAATCTCTGATTTTAACACCAGGCCACTACCAGTAGCAACAACATTGAATTTTGCACCAGCGGTCCTATCTCCTAAACAAAAGATATCATCTACTTATAAACATGCATGATGCACCTAGCTATATATGTGTTACCAAGCATTACCATTAGTATATTTCTCAAGCAAAGACAACATTTGCCTTCCGAGAGGCCCTTGGAAAGCCTGATAACTGCAAAATGAAATCGTTTTCTTCTGTTGAATAAAGTTCATCCTTCTTGTTGCAGACAATAACTAATTTGTCCAAGACAACTGCACTTTTGAGCACAAATTTTATCAGCTGAAGTAGACCTTGACAAGGTTTCTCATATTCACGAATTGTGACAATTTTGAGTCGCCGCATCACACTTGAAGAAGAAAGCTCATCCAGAAGCAGATCACAGTCACAGAAAAAATCCTGATGGTAGTTACATGAAATATTCTCTGTTAAATGAAGGTTTTGGCAAAAATATTAGCTAGATAAACTTGATTTACAGATAGACTTACCACATCCGC

mRNA sequence

GCGTGAAACACGTGCTCTATCTATTGAGAAGGAATTGGATAAGAGTGAGTGAGGGAGTGAGTGAACAAATTGAGTGGTTAGTGGTTGAGCAAATAATCAGAGATTCAGAGATGGCGAAATTTCCATTAACCTTAACCTTCTTCATCGTGGTCATTTCAGCTCTGCTTTTGCTCACTCAATCAGGAGAAACCTTTACTGATGAGAAGATAAAGGTGGCTAGAGAGGAAGAAAATGGAAGCTTACTTAAGCAGCTGCTTGAAGCAGAAGCAGTTCTGCAACTGCATGATGTTCGTGAGCCGTCAGAGTTTCAGGAACAGGATGAGTCTTCATCAACATCAACCAAGTTGAAGTGCACTCAATGTGGTGGAGATTGTTCATCCTGGAATGAGTGTTGCGAACCATGTCGTTGTGTACTTAACTCGTGCCTGTACCTACCCAACAGGGGAATTATGCTCAATGCAGAGTGACTGTAAACATGCTCCATCAATAAAATCTGAAGCTACCTTGAATAACAGAAAATCTATGCAGAAACGCGCATAACATGGATATTCATTCAACATTGTTATTACTTGCAAAATTACATAAAACTCATTGCTTTCACTGCCTACCAAACGGGTTGCTACAATATCGGAGAGCAACACGTGCTGCTTAATATTACATACACGATACACCAAACGAACCAAAAGCACTAGAACTGAACAACTTTCCTGGGAATCTCTGATTTTAACACCAGGCCACTACCAGTAGCAACAACATTGAATTTTGCACCAGCGGTCCTATCTCCTAAACAAAAGATATCATCTACTTATAAACATGCATGATGCACCTAGCTATATATGTGTTACCAAGCATTACCATTAGTATATTTCTCAAGCAAAGACAACATTTGCCTTCCGAGAGGCCCTTGGAAAGCCTGATAACTGCAAAATGAAATCGTTTTCTTCTGTTGAATAAAGTTCATCCTTCTTGTTGCAGACAATAACTAATTTGTCCAAGACAACTGCACTTTTGAGCACAAATTTTATCAGCTGAAGTAGACCTTGACAAGGTTTCTCATATTCACGAATTGTGACAATTTTGAGTCGCCGCATCACACTTGAAGAAGAAAGCTCATCCAGAAGCAGATCACAGTCACAGAAAAAATCCTGATGGTAGTTACATGAAATATTCTCTGTTAAATGAAGGTTTTGGCAAAAATATTAGCTAGATAAACTTGATTTACAGATAGACTTACCACATCCGC

Coding sequence (CDS)

ATGGCGAAATTTCCATTAACCTTAACCTTCTTCATCGTGGTCATTTCAGCTCTGCTTTTGCTCACTCAATCAGGAGAAACCTTTACTGATGAGAAGATAAAGGTGGCTAGAGAGGAAGAAAATGGAAGCTTACTTAAGCAGCTGCTTGAAGCAGAAGCAGTTCTGCAACTGCATGATGTTCGTGAGCCGTCAGAGTTTCAGGAACAGGATGAGTCTTCATCAACATCAACCAAGTTGAAGTGCACTCAATGTGGTGGAGATTGTTCATCCTGGAATGAGTGTTGCGAACCATGTCGTTGTGTACTTAACTCGTGCCTGTACCTACCCAACAGGGGAATTATGCTCAATGCAGAGTGA

Protein sequence

MAKFPLTLTFFIVVISALLLLTQSGETFTDEKIKVAREEENGSLLKQLLEAEAVLQLHDVREPSEFQEQDESSSTSTKLKCTQCGGDCSSWNECCEPCRCVLNSCLYLPNRGIMLNAE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo03986Spo03986gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo03986.1Spo03986.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03986.1.utr5p.1Spo03986.1.utr5p.1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03986.1.CDS.2Spo03986.1.CDS.2CDS
Spo03986.1.CDS.1Spo03986.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03986.1.utr3p.1Spo03986.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03986.1.exon.2Spo03986.1.exon.2exon
Spo03986.1.exon.1Spo03986.1.exon.1exon


Homology
[Close]
BLAST of Spo03986.1 vs. NCBI nr
Match: gi|902235501|gb|KNA23941.1| (hypothetical protein SOVF_019260 [Spinacia oleracea])

HSP 1 Score: 233.4 bits (594), Expect = 2.000e-58
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

		  

Query: 1   MAKFPLTLTFFIVVISALLLLTQSGETFTDEKIKVAREEENGSLLKQLLEAEAVLQLHDV 60
           MAKFPLTLTFFIVVISALLLLTQSGETFTDEKIKVAREEENGSLLKQLLEAEAVLQLHDV
Sbjct: 1   MAKFPLTLTFFIVVISALLLLTQSGETFTDEKIKVAREEENGSLLKQLLEAEAVLQLHDV 60

Query: 61  REPSEFQEQDESSSTSTKLKCTQCGGDCSSWNECCEPCRCVLNSCLYLPNRGIMLNAE 119
           REPSEFQEQDESSSTSTKLKCTQCGGDCSSWNECCEPCRCVLNSCLYLPNRGIMLNAE
Sbjct: 61  REPSEFQEQDESSSTSTKLKCTQCGGDCSSWNECCEPCRCVLNSCLYLPNRGIMLNAE 118
[Close]
BLAST of Spo03986.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWQ2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_019260 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 1.400e-58
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 

		  

Query: 1   MAKFPLTLTFFIVVISALLLLTQSGETFTDEKIKVAREEENGSLLKQLLEAEAVLQLHDV 60
           MAKFPLTLTFFIVVISALLLLTQSGETFTDEKIKVAREEENGSLLKQLLEAEAVLQLHDV
Sbjct: 1   MAKFPLTLTFFIVVISALLLLTQSGETFTDEKIKVAREEENGSLLKQLLEAEAVLQLHDV 60

Query: 61  REPSEFQEQDESSSTSTKLKCTQCGGDCSSWNECCEPCRCVLNSCLYLPNRGIMLNAE 119
           REPSEFQEQDESSSTSTKLKCTQCGGDCSSWNECCEPCRCVLNSCLYLPNRGIMLNAE
Sbjct: 61  REPSEFQEQDESSSTSTKLKCTQCGGDCSSWNECCEPCRCVLNSCLYLPNRGIMLNAE 118
The following BLAST results are available for this feature:
BLAST of Spo03986.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902235501|gb|KNA23941.1|2.0e-58100.hypothetical protein SOVF_0192... [more]
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BLAST of Spo03986.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9RWQ2_SPIOL1.4e-58100.Uncharacterized protein OS=Spi... [more]
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BLAST of Spo03986.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03986.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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