Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTAACCTTTGTTCAATAGAATTTTCTCCTTTCTCTCTCCTTCCTTTTATAAATTGGTTACAGAGCTATCACTGTAAGTCTGTAACTGAACTCAATCACAACCCCAAAATTCCAACCCCCACAAAATAAAAATAAAAAAAACAAATGAAAACAGAAAATCCAGCTGATGACAATCTTATTAATATCAGTAATAATAATAATAGAATCCAGCAAGAAGATCAGGAGGCTGCTGAGGAAGTAAGGAGAGGTCCATGGACACTTGAAGAAGACAATTTGTTGATCCATTATGTTGCATGTCATGGAGAAGGTCGTTGGAATTTCTTGGCAAAATCTGCGGGTAAGTTGTTAATTTCTTGGGAATTAACAACTAATAAAATAGTTTGTTGATTACAATTAGTCTAAAGTTGACATTTTTCTTGATCAGGATTGAAAAGAAATGGGAAAAGTTGCAGATTAAGATGGCTTAATTACTTAAAACCTGATATTAAGCGCGGCAATCTCAGTCCACAAGAACAACTTTTGATCCTTGAACTTCATTCTAAATGGGGTAACAGGTTTGTCTTTTTTTCTTTTCTTTTGGTGCATGCAATTTGTATTTCTCATCAAGACATGCATTTATAATTTTGTACATAGTTCATTAGTTCCATAAAAAAGTTAGAGCTATAATTGAAAAGTACTGCTAAGGAGTAATTTTAACTTTCTAATTAATCCCCGTTTCTTTAGAAAATTATATAAACGGATTCAAATATTTGAACTTTCTTTGTTGCTAAAGTATTGGTCAACCTAGTTATCAAAACTAGGACAGAACTTATTAGTATAGAGTTTTTAAGTGATGAAAATAGAATCATTTCACTATTCTATTAGCTAATGTTTGGTACGAGAGGTGTGGTCACATGATCAATTTCCTAAGGTACACCAAACAACTAATAATGGACTGCAATTTCCATTTCCCTTAGTTATTTATTTCCTTTCCATTTCCTTGTTATTTATTTCCTTTCCATTTCCATTTCCATTTCCATTTCCGCCTGCAATCTATATCATGGACTTTTATGGCTTCCTATTGTTTTACCCCTTTTACAGACGTTCGTGGTTTCCCTATAGATCGATAAAAGAATATACGGGGTACTTCCTAAATTAATGTAATTAGACTAGTTACTAACTATGAATATGCATTATTAATTAAAATAATGTGACTAACACCTAGGAATGGGTAAAATAGTAAAATGATATGATGTGAAAGTAGCAACTAGCAACTGAACCGAAATGTTAATCCTCATCATGTCTTGTGCAGTTGCGCTACATGTCCGGCCAATATACTTTAATTTACATGGGATAAAACGTGTCTTTCGTCTATCCCTAAACCATAATACTCGTTGTTTTCATTTGCATGATTAGCATGTAAGACGTTTAATTCTCTTTGACATTTTTGGTACTTGAGAACCATAATTGCTATCAGTTTCATGCCAAAATTGCACTCCACTCACTCATCATTCATCAAAAACCATGAGGTGACGCATGGTGGTCCATATATATTAAGACTATAAACATGTACACGAATACACGTACAATCTCATTACAATGACATTAATTAATTAATTACTAATCATAATATGAAAACTATGATGGATAATTTGTGGATTATTATTTGTTGATAGATGGTCAAAAATAGCAGCACATCTACCAGGAAGAACAGATAATGAGATCAAGAACTATTGGCGGACGAGGGTGCAAAAACAGGCTAGACAGCTTAATATGGAGGCCAATAGCCAAAGTTTCATAGATGCAATAAGGTGTTTTTACATGCCTAGATTGGTTCAGAAAATCGAGCAGAACTCGATTGATCATCATACAACAGCTATGAACACCGATCAAGTATCACATATTATACCATCATCAAATAAAGATACTTCATGCTCAAACACCAGCCTAGAATTCCAAGACCAACTCACTAATAGCAAAGACGGCTCCTCTATTGTACTAGATGATATTAACTCTGTGAATAGCTGTAACTATGACATGGACCTGGGTTCTATGTCAGCATCCGATATGCTGTTCTCCGGCTGCCACGTGGAGGGAAATGACTGGCTAGCAAACGATATGGCAGAGGATGGCATGTGGGTTTTGGATGAGTTGTGGCAGTTTAGGAAGTAGGAAATACAAATAGTTGGGCATCTAAACATGACAGAATGGGCCCTGCAGCTTCAAAAATGAAACTTCAAAGGCTTTTGATAAGAATCTACAATGTACTAATGTACCTTAGCTTGTTACTTGTTAGTAGTTACTGGTTACAACTTACAACTTACAACTTACAACTTACAACTTACAACGGAGTAGTATATATTAATGTTCTGTACGTATATATATGTTTTCTTTTAGGGTAAGACGAAGGGCCTACCCGGACCAGCTTCACAAAGTAAATGAAGTACGTATATTAGCATATACAGAGTATGATGTAATTTTGAAGTTTTTGTTCTAGGTGCAGCATTCCAATTTTAGCATGGTAAATTCTGTACCGAAGAGAACTTGTTTAAG GTAACCTTTGTTCAATAGAATTTTCTCCTTTCTCTCTCCTTCCTTTTATAAATTGGTTACAGAGCTATCACTGTAAGTCTGTAACTGAACTCAATCACAACCCCAAAATTCCAACCCCCACAAAATAAAAATAAAAAAAACAAATGAAAACAGAAAATCCAGCTGATGACAATCTTATTAATATCAGTAATAATAATAATAGAATCCAGCAAGAAGATCAGGAGGCTGCTGAGGAAGTAAGGAGAGGTCCATGGACACTTGAAGAAGACAATTTGTTGATCCATTATGTTGCATGTCATGGAGAAGGTCGTTGGAATTTCTTGGCAAAATCTGCGGGATTGAAAAGAAATGGGAAAAGTTGCAGATTAAGATGGCTTAATTACTTAAAACCTGATATTAAGCGCGGCAATCTCAGTCCACAAGAACAACTTTTGATCCTTGAACTTCATTCTAAATGGGGTAACAGATGGTCAAAAATAGCAGCACATCTACCAGGAAGAACAGATAATGAGATCAAGAACTATTGGCGGACGAGGGTGCAAAAACAGGCTAGACAGCTTAATATGGAGGCCAATAGCCAAAGTTTCATAGATGCAATAAGGTGTTTTTACATGCCTAGATTGGTTCAGAAAATCGAGCAGAACTCGATTGATCATCATACAACAGCTATGAACACCGATCAAGTATCACATATTATACCATCATCAAATAAAGATACTTCATGCTCAAACACCAGCCTAGAATTCCAAGACCAACTCACTAATAGCAAAGACGGCTCCTCTATTGTACTAGATGATATTAACTCTGTGAATAGCTGTAACTATGACATGGACCTGGGTTCTATGTCAGCATCCGATATGCTGTTCTCCGGCTGCCACGTGGAGGGAAATGACTGGCTAGCAAACGATATGGCAGAGGATGGCATGTGGGTTTTGGATGAGTTGTGGCAGTTTAGGAAGTAGGAAATACAAATAGTTGGGCATCTAAACATGACAGAATGGGCCCTGCAGCTTCAAAAATGAAACTTCAAAGGCTTTTGATAAGAATCTACAATGTACTAATGTACCTTAGCTTGTTACTTGTTAGTAGTTACTGGTTACAACTTACAACTTACAACTTACAACTTACAACTTACAACGGAGTAGTATATATTAATGTTCTGTACGTATATATATGTTTTCTTTTAGGGTAAGACGAAGGGCCTACCCGGACCAGCTTCACAAAGTAAATGAAGTACGTATATTAGCATATACAGAGTATGATGTAATTTTGAAGTTTTTGTTCTAGGTGCAGCATTCCAATTTTAGCATGGTAAATTCTGTACCGAAGAGAACTTGTTTAAG ATGAAAACAGAAAATCCAGCTGATGACAATCTTATTAATATCAGTAATAATAATAATAGAATCCAGCAAGAAGATCAGGAGGCTGCTGAGGAAGTAAGGAGAGGTCCATGGACACTTGAAGAAGACAATTTGTTGATCCATTATGTTGCATGTCATGGAGAAGGTCGTTGGAATTTCTTGGCAAAATCTGCGGGATTGAAAAGAAATGGGAAAAGTTGCAGATTAAGATGGCTTAATTACTTAAAACCTGATATTAAGCGCGGCAATCTCAGTCCACAAGAACAACTTTTGATCCTTGAACTTCATTCTAAATGGGGTAACAGATGGTCAAAAATAGCAGCACATCTACCAGGAAGAACAGATAATGAGATCAAGAACTATTGGCGGACGAGGGTGCAAAAACAGGCTAGACAGCTTAATATGGAGGCCAATAGCCAAAGTTTCATAGATGCAATAAGGTGTTTTTACATGCCTAGATTGGTTCAGAAAATCGAGCAGAACTCGATTGATCATCATACAACAGCTATGAACACCGATCAAGTATCACATATTATACCATCATCAAATAAAGATACTTCATGCTCAAACACCAGCCTAGAATTCCAAGACCAACTCACTAATAGCAAAGACGGCTCCTCTATTGTACTAGATGATATTAACTCTGTGAATAGCTGTAACTATGACATGGACCTGGGTTCTATGTCAGCATCCGATATGCTGTTCTCCGGCTGCCACGTGGAGGGAAATGACTGGCTAGCAAACGATATGGCAGAGGATGGCATGTGGGTTTTGGATGAGTTGTGGCAGTTTAGGAAGTAG MKTENPADDNLINISNNNNRIQQEDQEAAEEVRRGPWTLEEDNLLIHYVACHGEGRWNFLAKSAGLKRNGKSCRLRWLNYLKPDIKRGNLSPQEQLLILELHSKWGNRWSKIAAHLPGRTDNEIKNYWRTRVQKQARQLNMEANSQSFIDAIRCFYMPRLVQKIEQNSIDHHTTAMNTDQVSHIIPSSNKDTSCSNTSLEFQDQLTNSKDGSSIVLDDINSVNSCNYDMDLGSMSASDMLFSGCHVEGNDWLANDMAEDGMWVLDELWQFRK Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Homology
BLAST of Spo03828.1 vs. NCBI nr
Match: gi|902157962|gb|KNA06180.1| (hypothetical protein SOVF_183450 [Spinacia oleracea]) HSP 1 Score: 560.1 bits (1442), Expect = 2.200e-156 Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 1
BLAST of Spo03828.1 vs. NCBI nr
Match: gi|731340612|ref|XP_010681493.1| (PREDICTED: transcription factor MYB108 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 357.8 bits (917), Expect = 1.600e-95 Identity = 195/305 (63.93%), Postives = 221/305 (72.46%), Query Frame = 1
BLAST of Spo03828.1 vs. NCBI nr
Match: gi|870856729|gb|KMT08328.1| (hypothetical protein BVRB_6g141520 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 351.7 bits (901), Expect = 1.200e-93 Identity = 185/276 (67.03%), Postives = 207/276 (75.00%), Query Frame = 1
BLAST of Spo03828.1 vs. NCBI nr
Match: gi|731340614|ref|XP_010681494.1| (PREDICTED: transcription factor MYB108 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 344.4 bits (882), Expect = 1.900e-91 Identity = 191/305 (62.62%), Postives = 217/305 (71.15%), Query Frame = 1
BLAST of Spo03828.1 vs. NCBI nr
Match: gi|966343892|gb|ALT31508.1| (MYB9 [Fagopyrum tataricum]) HSP 1 Score: 288.9 bits (738), Expect = 9.300e-75 Identity = 160/268 (59.70%), Postives = 192/268 (71.64%), Query Frame = 1
BLAST of Spo03828.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QG06_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_183450 PE=4 SV=1) HSP 1 Score: 560.1 bits (1442), Expect = 1.500e-156 Identity = 272/272 (100.00%), Postives = 272/272 (100.00%), Query Frame = 1
BLAST of Spo03828.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C8I4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g141520 PE=4 SV=1) HSP 1 Score: 351.7 bits (901), Expect = 8.200e-94 Identity = 185/276 (67.03%), Postives = 207/276 (75.00%), Query Frame = 1
BLAST of Spo03828.1 vs. UniProtKB/TrEMBL
Match: A0A0U3C226_FAGTA (MYB9 OS=Fagopyrum tataricum PE=2 SV=1) HSP 1 Score: 288.9 bits (738), Expect = 6.500e-75 Identity = 160/268 (59.70%), Postives = 192/268 (71.64%), Query Frame = 1
BLAST of Spo03828.1 vs. UniProtKB/TrEMBL
Match: A0A068TWL8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032649001 PE=4 SV=1) HSP 1 Score: 287.3 bits (734), Expect = 1.900e-74 Identity = 148/275 (53.82%), Postives = 193/275 (70.18%), Query Frame = 1
BLAST of Spo03828.1 vs. UniProtKB/TrEMBL
Match: A0A0U2JSS8_FAGTA (MYB22 OS=Fagopyrum tataricum PE=2 SV=1) HSP 1 Score: 283.9 bits (725), Expect = 2.100e-73 Identity = 150/263 (57.03%), Postives = 180/263 (68.44%), Query Frame = 1
BLAST of Spo03828.1 vs. ExPASy Swiss-Prot
Match: MY108_ARATH (Transcription factor MYB108 OS=Arabidopsis thaliana GN=MYB108 PE=1 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 9.100e-54 Identity = 100/178 (56.18%), Postives = 131/178 (73.60%), Query Frame = 1
BLAST of Spo03828.1 vs. ExPASy Swiss-Prot
Match: MYB21_ARATH (Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1) HSP 1 Score: 197.2 bits (500), Expect = 2.300e-49 Identity = 84/118 (71.19%), Postives = 104/118 (88.14%), Query Frame = 1
BLAST of Spo03828.1 vs. ExPASy Swiss-Prot
Match: MYB05_ANTMA (Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1) HSP 1 Score: 193.0 bits (489), Expect = 4.400e-48 Identity = 83/108 (76.85%), Postives = 98/108 (90.74%), Query Frame = 1
BLAST of Spo03828.1 vs. ExPASy Swiss-Prot
Match: MYB24_ARATH (Transcription factor MYB24 OS=Arabidopsis thaliana GN=MYB24 PE=1 SV=1) HSP 1 Score: 189.9 bits (481), Expect = 3.700e-47 Identity = 104/242 (42.98%), Postives = 140/242 (57.85%), Query Frame = 1
BLAST of Spo03828.1 vs. ExPASy Swiss-Prot
Match: MYB40_ANTMA (Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 4.800e-47 Identity = 81/109 (74.31%), Postives = 100/109 (91.74%), Query Frame = 1
BLAST of Spo03828.1 vs. TAIR (Arabidopsis)
Match: AT1G68320.1 (myb domain protein 62) HSP 1 Score: 259.6 bits (662), Expect = 2.100e-69 Identity = 141/290 (48.62%), Postives = 187/290 (64.48%), Query Frame = 1
BLAST of Spo03828.1 vs. TAIR (Arabidopsis)
Match: AT1G25340.1 (myb domain protein 116) HSP 1 Score: 256.1 bits (653), Expect = 2.400e-68 Identity = 140/280 (50.00%), Postives = 188/280 (67.14%), Query Frame = 1
BLAST of Spo03828.1 vs. TAIR (Arabidopsis)
Match: AT1G48000.1 (myb domain protein 112) HSP 1 Score: 214.2 bits (544), Expect = 1.000e-55 Identity = 103/190 (54.21%), Postives = 138/190 (72.63%), Query Frame = 1
BLAST of Spo03828.1 vs. TAIR (Arabidopsis)
Match: AT3G06490.1 (myb domain protein 108) HSP 1 Score: 211.8 bits (538), Expect = 5.100e-55 Identity = 100/178 (56.18%), Postives = 131/178 (73.60%), Query Frame = 1
BLAST of Spo03828.1 vs. TAIR (Arabidopsis)
Match: AT5G49620.2 (myb domain protein 78) HSP 1 Score: 208.8 bits (530), Expect = 4.300e-54 Identity = 109/239 (45.61%), Postives = 149/239 (62.34%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo03828.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo03828.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo03828.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo03828.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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