Spo03665.1 (mRNA)

Overview
NameSpo03665.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionNucleolar GTP-binding protein 1
LocationSpoScf_01061 : 111053 .. 114293 (-)
Sequence length417
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCAGTATAACCTCAAGAAAATTACAGTTGTTCCCAATGGGAAAGAAATGATAGAATTTGTTCTATCTCGAACTCAAGGTTAAACCCCAACAGTTGTCCATAAAGGTTATGCAATTTCTCGTCTTAGGCAGTTTTACATGAGGAAAGTCAAATACACACAACAGAACTTTCATGAAAAGCTTTCTTCCATTATTGATGAGTTCCCTAGGCTCTATGATATCCACCCTTTTATGGAGATCTCCTCCATGTTCTTTACCATAATGATCGCTACAAGCTTTCCCTTGGACAAGTGAATACTGCAGGAAACCTGATTTCAAAAATCTCCAAGGATTATGTTAAGCTGTTGAAGTATGGTGACTCACTCTACAGATGTAAGTGTCTTAAAGTTGCTGCTCTTGGTTGAATATGCTCTCCGTGGAATTGTATGCTCTTCACATAGCTTCATTATTTGTCTCTGTGCAGGTTGTATTTCTCAATCTCTTGTCTCAATTTGCAGATCTTGTTCGTCCATATTAATGGTTTTGTCATCTTATATGATGTAGATGGTCTAGCGTAAGGTAACATCAAAAGTTCCTCCTTGTTTTTGTTTAATTTTTCGTTATTTTTTCTAATTTTGGATATCTAGGGTTTTTAGGTAGTTTCATTTGCAGCTGAAGTACTAGCAAGAGTCGGCCCATTAATTAAGAGCATGTGAAGCTTTATATCAGAGTACATAAAAATAAAGGGGAAAAGCAGTAGCATCAGCTGAAATGTAAGATGCATTGTCTTCTTACAACAAAAACAATCCCCTCCTAATTGACTTTAGAAAATGATGGTTTAACAATAAGACAGATATTATTATCTACAAATATTATGGGGTGAGAGGGGAGGTGATCAAACATTCAAACCGACATGTTTCTATTGCAATTGTATAGAGAATGTTCTTTGTATGCTCTGGAGGCCTTGATATGTATTTGGCAACTTAGAGAACTAGGTTAGAGCAATAACATTCTTCTCTTTCTGAATTCTGAAACAAGGCCGCTTAACTTTCTTTTTGAAAACAGGTTAGAGCTTGGTCTTTTGTTGGGGGCTCTTAGATGTGCTTAGGTAAAGTTTTCATCAGTAATTTTACTAATTGATGTTTGATGTAAAGTAAAATAAAGTTATTAGGAATGTAGTTTGAGTTTTGAAAATAGTAGCTACCTATCATGTTAGTATACTTTTTTTTTTGTTGATTTCGATTTGCTATCTAAATATATGGGTAGATTTTGTATTATTGTTGATGTGTCATGTGTGATTTGAATACATGCATTACTTTTGATTTTGTTGTAATGAGCTTCTACAATTTTTTTGAGTTTCAAAGTTAAGAAAACAAGAATATATAGTTCTTTGACTTGAAAGGTTACTTACTTGTCCTACATTTTCGCTGTTGTTAGACAATTTTCATTTTCCCCTTTGGATTTTATGGTGTCCCTCGTGATTATTATTTCTGTATGTAACCAATTTTATGGTGTCCCTCGGATTTATCTAGTTTCTTTTTCTAGTTGTGTAAAAGTAGTGGTGATTATATTTTTCAGAACTTTTAGACTAGATTTTCTTATCATTGACGGCCCTGTCTTGCCGTGTTGAATTTCAGAATATGCATTAGGGCTACCCTGCTGAAACATTTGTGTTATTATATGCGCTTGAGGTTGTTTTTAAGGTTTGAATTGAAATTTATTATTCCAGTTTATTATTTTGGTTGGCCCGTTATCTGATTATTATCAACCTGCAATAGCACTCGCTTCACAGCACTGGAAAGAACAGTAGTGTGTCTGAGTGTTCTTTGCGGTTAGGGGCTGACTTTTTTGGTTACTGCTTCTATTTTTCTGTTGCAATTTGTTGCTCTGGTGCTCTTTTCTTCTACTATCCAATTTGTTGTTCTGGTGTTATTTTCTGCTGCTATCCTAGCTGTGTCGTCCTTTTTCGGATAAGTTACGAAAAATAGCTAACATGTTTATTGTGTAAGTGGTGTTTTTTTCTTTGTTACTCTGTTCTTAACCTATGTCCTATTTAGTAGGTACTGAACATGTTAGCTTTGGTTAGTTACTAGTAAGAAAACAAAGAAAACACACCTCCAAAGTTTGTCAGCCTTGCTGATCTCTTCTTCTGTGCAGGCGATTTCAGCCCACCCATAAAGTCATCATACACTATTTCAGCCGACCCGTAATTCCATAAAGTCTTCAAACATTGTTGCAACACAAACTATGGTTAGTAGGCATTGATAGGCTAATCACCCCCAACTAGCCAGTACGTCTCACTTTCAACTATCAAGTATCACCCTGATTGTCTAGTGAATATCTCCCAATATCTAGTCCATGCTATCAGGCCTCCACTCTTCTTCGAGCTACACCTTATCCCAACGCAAATATCCAAGTCTATCACTATCCCGATACCCATGCTGTTGATAACTTTTGTTAAGTTTATTATTAATTTAGCTTTATCATCTAAGAGACAAAGAAATGCAAACTATTGACTCTTGGGACTGGATACCCTGGTATAGCCGTTATTGTAGTGGTATATATGTCAGAAGCTAGGAAAAATGAAACTGGTATAGCTGATACTGATTTTGACTCCGACTCTACCCAGTCAATCAATGAAAATAAGAGTTTATGAATGTTGTAATTTTATGTTGTCAGTACATAAAAGTCTTCTGGTATTTCATGATTTTTGTAGAAAAGAGTAAATGTTTATGATGGCTTGATCAGGGTTTTATACAAGGGAGATTCAACCATTCGGATTTGAAACAATATGTTTATATAATGTATTTGCAGGGGCTAATCTGGTCTGTACGTATGAACTATGAAGTTGATAAGTTGATAAGAAGGGAATCAACCCTCGTCTTTTATTAGAGTTAACATTTATTGTTTCATTGTTGTTTTGGTTCATTTCCGACGGGTGATTTGGATTTCCAACTCATGCTTATTTCATTTTGATTTTTCTTTGAAGATCGTCCAACGTGATAAGGAGCCGCATGAGAATGAAGCCATGACACTTGCGCTTATAAGCTACTACCACTATTAGATCCTAGTTTTTCTAGGATTTAGTTCTTCGGTTTAGTAGATACAATTTGTGTTTTTTTTAATTATGTTTTGGACTATTTAGTTAGTAACATATTAGTGACATTATCATGTACTATGGATTTTAACGTACTATGTACTTCTAGATTTTTGTAAGTATTTTTAATGTTATGTTGATCGAAGACCAATTATTTAAAAT

mRNA sequence

ATGGTGCAGTATAACCTCAAGAAAATTACAGTTGTTCCCAATGGGAAAGAAATGATAGAATTTGTTCTATCTCGAACTCAAGAGACAAAGAAATGCAAACTATTGACTCTTGGGACTGGATACCCTGGTATAGCCGTTATTGTAGTGATCGTCCAACGTGATAAGGAGCCGCATGAGAATGAAGCCATGACACTTGCGCTTATAAGCTACTACCACTATTAGATCCTAGTTTTTCTAGGATTTAGTTCTTCGGTTTAGTAGATACAATTTGTGTTTTTTTTAATTATGTTTTGGACTATTTAGTTAGTAACATATTAGTGACATTATCATGTACTATGGATTTTAACGTACTATGTACTTCTAGATTTTTGTAAGTATTTTTAATGTTATGTTGATCGAAGACCAATTATTTAAAAT

Coding sequence (CDS)

ATGGTGCAGTATAACCTCAAGAAAATTACAGTTGTTCCCAATGGGAAAGAAATGATAGAATTTGTTCTATCTCGAACTCAAGAGACAAAGAAATGCAAACTATTGACTCTTGGGACTGGATACCCTGGTATAGCCGTTATTGTAGTGATCGTCCAACGTGATAAGGAGCCGCATGAGAATGAAGCCATGACACTTGCGCTTATAAGCTACTACCACTATTAG

Protein sequence

MVQYNLKKITVVPNGKEMIEFVLSRTQETKKCKLLTLGTGYPGIAVIVVIVQRDKEPHENEAMTLALISYYHY
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo03665Spo03665gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo03665.1Spo03665.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03665.1.CDS.3Spo03665.1.CDS.3CDS
Spo03665.1.CDS.2Spo03665.1.CDS.2CDS
Spo03665.1.CDS.1Spo03665.1.CDS.1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03665.1.utr3p.1Spo03665.1.utr3p.1three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo03665.1.exon.3Spo03665.1.exon.3exon
Spo03665.1.exon.2Spo03665.1.exon.2exon
Spo03665.1.exon.1Spo03665.1.exon.1exon


Homology
[Close]
BLAST of Spo03665.1 vs. TAIR (Arabidopsis)
Match: AT1G50920.1 (Nucleolar GTP-binding protein)

HSP 1 Score: 47.4 bits (111), Expect = 4.500e-6
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 1 

		  

Query: 1  MVQYNLKKITVVPNGKEMIEFVLSRTQ 28
          MVQYN K+ITVVPNGKE ++ +LSRTQ
Sbjct: 1  MVQYNFKRITVVPNGKEFVDIILSRTQ 27
[Close]
BLAST of Spo03665.1 vs. TAIR (Arabidopsis)
Match: AT1G10300.1 (Nucleolar GTP-binding protein)

HSP 1 Score: 46.2 bits (108), Expect = 1.000e-5
Identity = 20/27 (74.07%), Postives = 24/27 (88.89%), Query Frame = 1 

		  

Query: 1  MVQYNLKKITVVPNGKEMIEFVLSRTQ 28
          MV+YN KKITVVPNGK+ ++ VLSRTQ
Sbjct: 30 MVKYNFKKITVVPNGKQFVDIVLSRTQ 56
The following BLAST results are available for this feature:
BLAST of Spo03665.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03665.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03665.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo03665.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G50920.14.5e-674.0Nucleolar GTP-binding protein[more]
AT1G10300.11.0e-574.0Nucleolar GTP-binding protein[more]
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