Spo03618.1 (mRNA) | SpinachBase

Overview


Name	Spo03618.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Pentatricopeptide repeat-containing protein, putative
Location	chr2 : 416993 .. 428018 (-)
Sequence length	870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTATCACTGTGGAGAGAAAGCTGCTGGTGAGGAGGCGGCGGCGATGCGGTGGCGAGGCGCGCAAGGCGCTGGGCGATGCGATGCGAAGGTCCGGTTCTGTTTGATTTTAACTCTTTTTAATTTAAATTTGCTTTAATTGGGTGATATTTGTTGTTAATATTCTGGGTTTGTCAATTATTTGTATGTTGCTTGAATTGACGTTGTTTTAATTTGGTGAGATTTTTGAGGGTTTCAGGAAACAATGTGAAGTCACCCCGTCCAGGGAGCTGTATGTTAGAAATTGGGGTATTCGATTTTTTAGGGTTTCATGTTTGAAATTGAACTCAATTTGAGGATATCAAGTTATTGTTTTGATGCCTTGACGAAGGTAATCCCAATATTTTAGCTTCTAGGTGATTGAAGATGAGGGTTTCTTGGCTGAAATTGATCACAATTTGGGGATTTTAGTTAGTTTATATGATTTTGGCTTCTGGTAATAGATAAAAGTAGGGTTTCAAAAATGTAATTTATACCATTTATATTTGGTGATTACTGGGTTTATATTGAATTTTTTTCTGGTCTTAATTTCGTTGTTCAATTTTTAATGAACATAGGGTGTTAAGTTCAAAATATGCGATGAACATAGGGTGTTAAGTTCAATGAATTTTGCGTGCATGAACTTTATTTGTTAAGTTCCACTGTCAGTTCTTAGGGTGTCTTGAAATCAAAGAATTAAGAGTCTAGACTATGGATGTCTTATAATCTTTGAGAATTTGCAAGATTAAACTTTATTTGTTATGTTGTTATGCGATGCGTGCGAGACAATTCATTAAATCAAAGAATTAAGTTCCACTATCAGTTCTTAGGGTGTCTTGAAATGAAAGAATTAATTTGAATATTTTGAATTTAACAAATAAAATTAACACCACTGGGTTTAATGAATTTCGCGTGCATGAACTTTATTTGTTAAGTTCCAGTGTCAGTTCTTAGGGTGTCTTGAAATCAAAGAATTAAGAGTCTAGACTCTGGATTCTTGAAAACTGTATTTTCATGCTTGATGCTTCTAGCATCTCTGATGGTTAGTCTGGTTTTTTAACTGAATCAGCTGTATGGCTAAAATTCTGAGTTGTACTTGATTTCGTAATTTAAAAAACTGATACTAATCTTTGACATTTGTTAGTGGTAATGATATTTATTTGAAAATTAATGAAGTAAATTAAATTTCTAGCTATTTGTCCTACCAATAAAATTTGAAAATAACAGCATATTTTTTGAAATAAAAGCATGAACATCGATCTGTAATAATTAATTGAAATCAATAAAATCATGCATATTACTATTTGGTTTGAGATATTGATGGGTGCATACCTTACTCTGTTGGTTATTGTATGCCTTGACGAACTTGACACCCAACTTGCGAACTTTAAACGGTTATTCTGATCTGCATAAACCATGAATTATTGTCAAGTACTTAATATTTTGTCAATAAAATATGAAATTAGAGATTTAAATCAAATAAGAAATTATTTAATCAAAAACATTAATTAAAATATGAAATAATTTATTAAACATTAATTTTGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAGTTGGACCTTGGGGTGGTACGACCGGTCCGCCTTTTGGTGTGCACCGGCCGTCTCGCCTCTTTCGCCGGCGATGCGCTCCTGGCCTTAATTGGCCGGGTCGTGCCTCCGGCACTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATACAAAAAAAAAAAAAACTAAAACAGACACCATATCGATTTTCTTCTCCCCCAAGCTGAGAGGGTGTACGTTAAGGGTGTTTACTAACGTGCGCCACCTTCACCAATGGCGAAGAAGAAGAAGGCTAGCTTGATTGTAACTTCACCAATGGCTTCGGAGGATGTTTCCGCTCAGTCTAACCCTAGAAATGAGTCTCTTTTGGTTCCAGAAGGGGGCCAAAAATCGAACCCATCTGCTGCAAATAGCGCGACGAACTCTGAGAATGAAGAACTTGTTTACTCCAATCTAGTGCACTCCTCGGCTGGTATGATTCCTAAAGCTCTTCATGACACCATTATTGCTTTGAATCAATCGTTGGGGCTCACTGGGGAGGGGAATTTGATTCCTCAGTGTAGTACGGACTCTGTTTTTCGAAACTCTGGTCATGTGGGTGTTATTGGTCAACCATTGAAGCATCAAGCTTCTCCTAGTGGTTCGACACAGGTTCCTAAGGAGGGGGGAACTGTTAAGGAACCATGGGTGAATCTATTTGCTGGGGCTAAGCTTGCTTCCAAAGGAGCTCCCCTGGAATTTGTGACACCTTTGGTTAAAGATGGGAAAAAAGTAGCACAACTGCAGCAATCTGAGCTTGCCACTATGGCTGATAAATGGCAAGCCTCTTTAGTTATGTATGTTGTAGGAGAATCACCAACTTTGGCCTCTGTAAGGAGATTTATGGCTGCTGTGTGGAGTGAAGTTTCTACTCCTCAAGTGTTTTTTCATGATGAAGGGTACTTTATCATTAGATTTGAGTGCATTGAGGATAAGAATCGCATTGTTGCAGGGGGTCCTTACACCTTTTATGGTAAGCCAGTGATCATTAAGCCATGGGCAGCAGATTTCAACTTCTATGAGGAGGTTCTCAAAGTGATTCCCTTGTGGGTTAAATTTCCTAATTTGCCTTTGCATTGCTGGGGGAGTGATTCTCTCAGTAGGATCAGTAGTTTGTTGGGGGTTCCCTTGTGTGCTGATGAGTGTACAACAAAGCAGGAGAGAGTTTCATTTGCCAGGGTTTTGATTGAGATGGATATTACTACTGTGTTACCAGACCATGTTTGGATTGAAGATGCTAGGGGAGTTGTGTTCAAACAGGCTGTAGTGTATGATTGGAAACCCCTCTATTGTAAAAAGTGCAATACAGCAGGCCATGATTGTACCAAGCCCTCTAATGTAGCTCCTAAACCAGCTGTAAAGAAGATTTGGGTGGCTAAGCCAACTCAGCAGCATGTTTCAGCCCCACAGCAACAGACAGGGGGGATCCTTACTCCCCATCATGATCCACCTGTAGTTCAAACTAGTGGTCAAGATTGGAACATTGTAACAAGGAGAACTAGGGGACCTAGCAGGATGAGGAATTTGAGCCCTAGTAATCCTTTCACTGTGCTTTCTGGTGATTTGGGATTCAAGGAGATATCTGGAGAAATGGATAGTGATGGTGTGATTGTGCAGAATACCTCACATGAACCTCATGAAGAAGGTTAACTTATGTACTTGGAATGTGAGAGGCTTTAATGATCCTGTTAAAGCTTCTGAGGTAAAGCATCTGTTGCAAGTTAACAATGTTAATATCATTGCTTTATTAGAAACTAGAGTAAAAATAGCTAAATTTCCTAGGTTGTCTTCTAAACTTGGTAGACACTGGAGTTGGGAGAACAATTATAGCTTGAATCCTAGAGGCAGGATCTGGTTGGGTTGGCAACAATCAGAAGTTGATCTGTCAATTCTGCATACTCATGAGCAGTTTTTGCACTGTGTGATTAGGGATAGAACTGGTGATATTTCTTTCTTCTTTACAGCAGTCTATGGTTTGCATACCATTGAAACTAGGAAGGATCTTTGGCACTCCCTTGTGCTTATTCTCCCTAGTGTTGGTTCTCACCCTTGGCTCTTATCTGGTGACTTTAATTCCCTCTTGTCTGACACTGATAGGATTAATGGCTCTCAGGTTTCTATTGCTGAAACCAAAGATTTTAATGAGTTCATTTTGACTGCTGGTCTTTGTCCCCTACAAAGTGTGGGTCACTATTTCTCATGGCATAAAGGTTCTGGTGATGGGAAAACAGCTAGTAGAATTGATTGGGGGCTTGGTAATGCTGGTTGGATCCATAAGTTTAGTGGTGTTCCTGTTCAATATCTCAACTCTTCCATTTCTGACCACTCTCCACTCTTGGTGAACTGTTTACCTGATAAAATGGAGGGAGGCAAACCTTTTAGATTCCTGAATTACCTTGCAGATCATAGTAAGTTTGCTTCTCTGATAGAGAATAGTTGGGGTACCAGAGGGAAAACAGGTTCTGCTATGTTTAGTTTGTGGTCTAATTTGAACCTTGTGAAGCACAAGTTGAAAGCTCTGCATTCTGAAGAGTTTGCTGGCATCAAAGAGAGAATTGAAATGGCTAGATCTCAGCTAGAGATAGTTCAAACCTCTCTTCAAACTACTCCTTCTCCTGAGTTGTTTGAACAAGAGAGAACTTTCACTGATAATTTGAGGAAATGGCTTAGGGTGGATGAAATTGCTTTGAGGCAAAAATCAAGAATTCAATGGCTCCAAGTGGGGGACTCTAATCACCATTTCTTCTTCTCTTCTATCAAGGAAAGGAATAGGCAAAACAGGATTACAGTTCTGTTTGATGATTGTGGAAACAAATTGGTTGAAGCTGATGCTATTCAGGGTGAAATTGTTGGTTTTTATAAAAAATTGCTTGGGTCAGCTGCTCAGTCCTTGCCTGCAGTTCACATTCCTACTTTGAGAAGTGGTAGTACTCTCAGTATTCCTGCTAAACAATGGCTATCCAGAGAGGTAACCACTTTAGAAATTGACCAAGCTCTTAAAGGGATTGGTGATGACAAAGCCCCTGGCCTTGATGGGTTCAATGCTGTTTTCTTTAAAAGAACTTGGCATGTTATTAAGGCTGATGTGTATAAAGCTGTACTTGAAGTTTTCAGAACTAACACTATGCTGCCTCAATTCAACTGTACTTCCATTACTCTTGTCCCTAAGGTTCCTAACCCTTCTAAGGTTAAGGATTTTAGGCCTATAGCTTGCTGTACTGTTATCTATAAGCTAGTGGCAAAGATTCTCACAACCAGGATGCAGAGTGTTATTGGTGATGTTGTGAATGAAGCTCAATCTGGCTTTATTCCTGGCAGGCAAATCTCTGATAATATTCTCCTAGCAACTGAGCTGATCAAAGGTTATACCAGAACTCACATCTCTCCAAGGTGTCTCATAAAGGTGGATTTGAAGAAAGCTTATGATTCCATTGAGTGGTCTTATCTGAAAAGTGTTATGGTGGAACTTGGGTTTCCTGTGTGCTTTGTGAGGTGGGTTTTCACCTGTATCTCTACTGTTTCTTATAGCATTTTGATCAATGGGAAGCCATCACAACCCTTCAGAGCAAAGAAGGGTTTGAGACAGGGTGATCCAATGTCTCCATTTCTCTTTGCTATTGGTATGGAATATCTTACAAGACACTTACAACAGCTGCAGAATTTGCCAGATTTCAATTTCCACCCTAAGTGTGAGAAGTTGGCCCTCACACACTTGATGTTTGCTGATGATCTTCTTATGTTCTCAAGAGCTGATACTCTGTCAGTTGAGATGCTTTTTGCTGCTTTCAATAATTTTTCAAGAGCTTCAGGTCTTGAAGCTAATTTGGACAAGAGTAACATTTACATTGGTGGGGTTTCTGCTGCTACCAAAGCTGCTATTCTTGATGCAGTTCATATTCCAGAGGGGCAATTTCCCTTTAGGTATCTTGGTGTTCCACTCTCTACTAAAAAACTGGTTTATAACCAATGCAGAACTTTGATTGACAAGGTGGTGGCTAGAGCTAAGTCTTGGACAGCTAGGCATCTCTCTTATGCTGGTAGACTTCAGTTGGTTCAAGCAATCTTGCTTAGTTTGCAAGCTTTCTGGTGTCAAATCTTTATTTTACCTAAGAAAGTGTTAAAGGAAATCCAGAACTTCTGTAGGATTTTCCTTTGGACTGGTCTTACTGATCCTTCCAAAAGATCCATGGTGGCATGGCACTCTCTTTGTCTTCCTAGAAGTGCTGGTGGGTGGAACCTTAAGGAAATGGGGTTATGGAATAAAGCTGCTGTGTCTAAGCTGCTTTGGGCTCTAACTCACAAAAAAGACAGATTGTGGAGCAGATGGGTTCACACCTATTACATTAAAAACAGGCCTCTTTCCACTCAATGGCCAGCTACAATCTCTTGGTCACTGAGGAAGATTCTGGATTCTCACACTCTGATTGATGATGTTGGTGGATGGGATGCTGTTGTGCAGAAAGGGAAATTCTCCATTAAATTGATGTATAAACATCTCCTTGGTGTTCATGACAAAGTTCCCTGGAAAAGAGTGGTCTGTAATAATAAAGCTTCCCCTAAGAGTGTGTTTATCACTTGGCTTGCACTGTGGAACAGACTTCCCACCAGAGATAGGCTGCTAGCTTGGAAGATTGTCACTGCTAACAGTTGTCCACTTTGCTCAACCATGCCTGAATCTACTGGTCACCTATTTTTTGAGTGCTCATATTCTGCTGCTGTGTGGGGAAAGATCCTTCAACAGTTGCAGTTTCACAGAAATCCTGCTCCATTTGATCAGGAACTTGCTTGGATATTGAAAGCTACTAAAAGAACTGGTGATAGATATAAATTGCTGCTGATGTTCTTCTCTGAAAGTGTTTATGGCATTTGGCTTCAGAGAAATGAGATGGTGTTTAACCAACAATGCAGAAGCCCTGCTGATTTAGTGCATGATATCCAGTTTAGGGTGGCTTGTAGGGCCACTGACAGTCAGAAGCTGCTATGCTGAGTTTGTGTTAGAGGTGTCCTTTTTTGCTAGTGTTTAGCTTTGTGCTTGTTGTTTTTGGTGTTCTGGTGGCTTGTGCCTAACACTGTGCTAGTTCTTTTACTAGCCCTCTCCTTTTGGTAATAAAATAACTTTATTTGCCAAAAAAAAAAAAAAAATCGGTTAAAACCATGCCTATTACTATTTTTTGTGTAAAAGATTGTTGGGGAAGATACCGTAAGTCGTTCTTTATTGTATCTCTTTATGTACTTCAAAACCAACTGAAAATCTGCATAAAAACCGATTCAAGTCAATTCTTTTTCAATTCATAATTCTATTAACACAAATTTACGTTATTTCTGTTAAACATAACTTATGTTTTGCAATCTGCAAATAGAGATTAAAAAAATTATATGAGATAATTTAATTAAAAGCATGAATTAAAATATGAAATAATTTATTAAAATCCACAAAAGCACGAAACTTACATACCTTATATTTTCAAATCTGTAAAATAAATAAACGAATAGTGTGTTAGGTAAGCATATTTAATTTACATAGCATAAAAATTCAAAAATTTTCGAATTATTATTATTAAATAATATTTCTTTAATTTGGCAATGCATATTCAAATCAGAAGAATGGCTATGAGAATAATATTTCTTTAACACATACCTTATACGGAGTATTTTTAAATCTGCAAAATAAATAAACAGGTAGTGTGTTAGGTAGACAGATTTAATTTACATAGCATAAAAATTCAAAAGAAGAATTTGTTTATGCATAAAAGTTTTCGAATCTGAAGAATGGCTCTGAATTAAATGGCTCTTATTCATGAATTTGTTTAAAAATTTAGATGTTTAATCTCTGTTGTTGTTATGCATTAAAATTCATGAATTAAAATAATTTGAAATTTGTTTAATTTTTATTTTTATTTTCAGGATTCGTGAGAAAAGTATACTTACGTTACGTGTGTGGGAGCGACTTCAAGAAGTATGGTGATATGGGGTTTTCGAGAATGGCGTTCTTCTGAGAATGATTTTTCAGTGCAGTAGGGTTTTTTTCGAGAATGGCGTTCTTCTGGAGAATTTTTCAGGCTTTTTGGTTTACTGGAGAATTTTAAAGAATTTTTTGTGTACTTGTGATTTTGTTTCCTGATTTGTAATAATTTTCAATTGTAATAATGTGTAGTATTTTCCTTAATTTTCTTTTTCTTTCCCGTTTTAACTCCTAATCAACCAAAATTGGGGTAATTGACATATAAAAGATTTTATTTGGGTACAGCAGTGATTGTACATTAAATGGGCCATTAATCACTTTTTGGGCGTTAGTAATTGGAATCAAATTGATCACTTCTGCCATACACTGTTAAACAACGAAGGGTATTTCTGTAAATTGCCTGGGGGACACGAAAAGTTAATTTACTTAAAAGCCCTCAGGAGCTGGCTTATATAATAGAGATTGAAACTCGTGCGATGCACGGGTTTGTCAATTTTCGTACATATTTGTCTCATTATATCATTGTATACAAATAGGTGTTTTATAAATTATACGTATAATAGAAAGTTAAAATAGGTCTCGTTTCAAGTTGGAGTATAAATGTGTTATTTATATTTAAAATGTTTATGCATAAGACCCTCATAGAAAACCGAGTTATGAAATGGTTAGTTCAATAACAGTAAAACTCGAGTTAGTTATTCAAGCCCGTGCGATGCACAAGTTTGTCAATTTTCGTACATATTGGTCTTATTATATCATCGTATACAAATAGGTATTTTATAAATTATACGTATAATAATAGAAAGTTAGAATAGGTCCCTTTTCAAGTTGGAGTTTAAATGTGTTCTTAATATTTGAAATATTTATGCATATCTTATTTTTTTTAAAGGGGATAATTGTATATATGTTTTTCTCATATTATCTTTAACTTAGTACTTATTTATCTTTTTATTCCCAGCAAATTGTATCTCTTATTATCCTTTATCGGGTAAAAATTTGAATAATATTGGTTAAATATTTATAGTAATGAGGATTCATCAGACCCAAAAAAAAATTGACGAAAAGAAAACACTATAGTATAGTTGGGGTGTTAGCATGATTGATTGTTGATTAAAATATTAATTATGCACTCTATTATAATTAGATTTATTATATATAAATTAAGATCGTTCTTAGTTTTTCGATTCCGTATTGAAATAATAGGAATTTCCCATGTATTGTTATCTTATTCAACCCCCACTATAGTGTTCTTTTTAAAAAAAATACTTCGTACTTTAGAAAGATCTGCCTCTCACGTAACTCTTTTTGTTTACAATTCTATCTTATTTTTTATAAAGGGGTTAATTGTATCTTTTTCTCTGATTATCTTTTACGTAGTACTTATTTATCTTTTTTATTCATATCAAAATTTATCCCTTATTATCTTTTATCGGGTAAAAATCTGAATAATATTAGTTAAATATTTATAGTAATAGTTTTGTAGCTTAGTAGAAATTTTGGAAATCTACAACTTTTAATTAAAAATTTCATGTTTAGGGGTTTAAAATTAAAATTACACTTCTATATTTTTTGGGCGGGTATTTACTTCGGACACATTTGCTTATCGGAGCTTTGGCTTAACACTAAATATTACTCGTAGTATATATATATATATATATATATATATATATATATGGATTTTTTGCCAAAAAGGACCTTTTATAAGCATTTTTTTGCGAGAAAGGACCTTTTATGTCAAAATTGGTGAAATATGACCTAAAATACAATATTTTTTGTTAAGTGGGACCTTTGCCCGGATTCTTGGAGTCAACCCAAGTTTCTGGCGTTGACTTCGACACGTGGCAGCCGGAAACTGCCACGTGTCAATATCCTTATTTTAAAAAAAAAAATTTATTTTTTTTCCCAAAAATCATCGTTTTACTGAAACAGTTTTACCCAAAAAAAAAAATCGATTCTCGATTCTCTTCTCTCTCCTCTGCTCCTTCAACTCGACGCCATTGTTGAAGATTCAAGGTTGAAGGAAAGTGCTTCTTCACTCAAATTGCTTGCCACGAATTGTTACTCAGGCCTCCACGAATCAGGTATGCTATTTCCCCCCCTCAAAATCCTCTTCAATTGTTGTAATTTTGGGTCGAAAAAATTAGGGTTCTTCCCAAATTTGGGGATTTTGTAATTCGTTGTGTATTTGTGTTTTAGATTGATAATGTCCCATCAAAAAGCGAAAATTTGGGGACTAATTCAGTTTTACTTAGTGGTTGGTGTAGAATGAAGAATCTAATGGAAGCTGGTGAAATCTGGAACGAGATGATTGATCAAGGTTTGAACCCAGATGTTATTACTCATAANNNNNNNNNNATATATATATATATATATATATATATATATATATGGATTTTTTGCCAAAAAGGACCTTTTATAAGCATTTTTTTGCGAGAAAGGACCTTTTATGTCAAAATTGGTGAAATATGACCTAAAATACAATATTTTTTGTTAAGTGGGACCTTTGCCCGGATTCTTGGAGTCAACCCAAGTTTCTGGCGTTGACTTCGACACGTGGCAGCCGGAAACTGCCACGTGTCAATATCCTTATTTTAAAAAAAAAAATTTATTTTTTTTCCCAAAAATCATCGTTTTACTGAAACAGTTTTACCCAAAAAAAAAAATCGATTCTCGATTCTCTTCTCTCTCCTCTGCTCCTTCAACTCGACGCCATTGTTGAAGATTCAAGGTTGAAGGAAAGTGCTTCTTCACTCAAATTGCTTGCCACGAATTGTTACTCAGGCCTCCACGAATCAGGTATGCTATTTCCCCCCCTCAAAATCCTCTTCAATTGTTGTAATTTTGGGTCGAAAAAATTAGGGTTCTTCCCAAATTTGGGGATTTTGTAATTCGTTGTGTATTTGTGTTTTAGATTGATAATGTCCCATCAAAAAGCGAAAATTTGGGGACTAATTCAGTTTTACTTAGTGGTTGGTGTAGAATGAAGAATCTAATGGAAGCTGGTGAAATCTGGAACGAGATGATTGATCAAGGTTTGAACCCAGATGTTATTACTCATAACATAATGTTAGATGGGTTGTTGAAGGTTAATAAGAAATCTGATGCAATCAAGCTTTTCGAGGTGATGAAAGTTAAGGGTCCACCCCCAAATGTTCGGACCTATACTATATTGATTAGGGATTTGTGCAAGCATTCAAAGTTGAATGAAGCTGTTGCTTACTTTGATGGGATGACTTCTTCAGGTTGTAACCCAGATGCTGCTGTATATACTTGTTTGATTACTAGATTTGGGAACCTTAAAAAGATGGATATGGTGTTTGGTTTGTTAAAAGAGCTGAAGGAAAAGGGTTACCCACCTGATGGGCAACTGTATAATGCTTTGATTAAGTTGATGACGAATAGAAGAATGCCGGATGATGCAGTTCGTGTTTAA

mRNA sequence

ATGTCGTATCACTGTGGAGAGAAAGCTGCTGGTGAGGAGGCGGCGGCGATGCGGTGGCGAGGCGCGCAAGGCGCTGGGCGATGCGATGCGAAGGTCCGGAAACAATGTGAAGTCACCCCGTCCAGGGAGCTGTATGTTAGAAATTGGGTTAAAAAGCTCGTAGTTGGACCTTGGGGTGGTACGACCGGTCCGCCTTTTGGTGTGCACCGGCCGTCTCGCCTCTTTCGCCGGCGATGCGCTCCTGGCCTTAATTGGCCGGGTCGTGCCTCCGGCACTGTTACTTTGAAGAAATTAGAGATTCGTGAGAAAAGTATACTTACGTTACGTGTGTGGGAGCGACTTCAAGAAATTGATAATGTCCCATCAAAAAGCGAAAATTTGGGGACTAATTCAGTTTTACTTAGTGGTTGGTGTAGAATGAAGAATCTAATGGAAGCTGGTGAAATCTGGAACGAGATGATTGATCAAGGTTTGAACCCAGATGTTATTACTCATAACATAATGTTAGATGGGTTGTTGAAGGTTAATAAGAAATCTGATGCAATCAAGCTTTTCGAGGTGATGAAAGTTAAGGGTCCACCCCCAAATGTTCGGACCTATACTATATTGATTAGGGATTTGTGCAAGCATTCAAAGTTGAATGAAGCTGTTGCTTACTTTGATGGGATGACTTCTTCAGGTTGTAACCCAGATGCTGCTGTATATACTTGTTTGATTACTAGATTTGGGAACCTTAAAAAGATGGATATGGTGTTTGGTTTGTTAAAAGAGCTGAAGGAAAAGGGTTACCCACCTGATGGGCAACTGTATAATGCTTTGATTAAGTTGATGACGAATAGAAGAATGCCGGATGATGCAGTTCGTGTTTAA

Coding sequence (CDS)

ATGTCGTATCACTGTGGAGAGAAAGCTGCTGGTGAGGAGGCGGCGGCGATGCGGTGGCGAGGCGCGCAAGGCGCTGGGCGATGCGATGCGAAGGTCCGGAAACAATGTGAAGTCACCCCGTCCAGGGAGCTGTATGTTAGAAATTGGGTTAAAAAGCTCGTAGTTGGACCTTGGGGTGGTACGACCGGTCCGCCTTTTGGTGTGCACCGGCCGTCTCGCCTCTTTCGCCGGCGATGCGCTCCTGGCCTTAATTGGCCGGGTCGTGCCTCCGGCACTGTTACTTTGAAGAAATTAGAGATTCGTGAGAAAAGTATACTTACGTTACGTGTGTGGGAGCGACTTCAAGAAATTGATAATGTCCCATCAAAAAGCGAAAATTTGGGGACTAATTCAGTTTTACTTAGTGGTTGGTGTAGAATGAAGAATCTAATGGAAGCTGGTGAAATCTGGAACGAGATGATTGATCAAGGTTTGAACCCAGATGTTATTACTCATAACATAATGTTAGATGGGTTGTTGAAGGTTAATAAGAAATCTGATGCAATCAAGCTTTTCGAGGTGATGAAAGTTAAGGGTCCACCCCCAAATGTTCGGACCTATACTATATTGATTAGGGATTTGTGCAAGCATTCAAAGTTGAATGAAGCTGTTGCTTACTTTGATGGGATGACTTCTTCAGGTTGTAACCCAGATGCTGCTGTATATACTTGTTTGATTACTAGATTTGGGAACCTTAAAAAGATGGATATGGTGTTTGGTTTGTTAAAAGAGCTGAAGGAAAAGGGTTACCCACCTGATGGGCAACTGTATAATGCTTTGATTAAGTTGATGACGAATAGAAGAATGCCGGATGATGCAGTTCGTGTTTAA

Protein sequence

MSYHCGEKAAGEEAAAMRWRGAQGAGRCDAKVRKQCEVTPSRELYVRNWVKKLVVGPWGGTTGPPFGVHRPSRLFRRRCAPGLNWPGRASGTVTLKKLEIREKSILTLRVWERLQEIDNVPSKSENLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLFEVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNLKKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo03618	Spo03618	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo03618.1	Spo03618.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo03618.1.CDS.5	Spo03618.1.CDS.5	CDS
Spo03618.1.CDS.4	Spo03618.1.CDS.4	CDS
Spo03618.1.CDS.3	Spo03618.1.CDS.3	CDS
Spo03618.1.CDS.2	Spo03618.1.CDS.2	CDS
Spo03618.1.CDS.1	Spo03618.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo03618.1.exon.5	Spo03618.1.exon.5	exon
Spo03618.1.exon.4	Spo03618.1.exon.4	exon
Spo03618.1.exon.3	Spo03618.1.exon.3	exon
Spo03618.1.exon.2	Spo03618.1.exon.2	exon
Spo03618.1.exon.1	Spo03618.1.exon.1	exon

Homology

[Close]

BLAST of Spo03618.1 vs. NCBI nr
Match: gi|902240620|gb|KNA26028.1| (hypothetical protein SOVF_000970 [Spinacia oleracea])

HSP 1 Score: 321.2 bits (822), Expect = 1.800e-84
Identity = 155/164 (94.51%), Postives = 158/164 (96.34%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           N  T SVLLSGWCRMKNLMEAG+IWNEMIDQGLNPDV+THNIMLDGLLKVNKKSDAIKLF
Sbjct: 414 NTKTYSVLLSGWCRMKNLMEAGKIWNEMIDQGLNPDVVTHNIMLDGLLKVNKKSDAIKLF 473

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
           EVMKVKGP PNVRTYTILIRDLCKHSKLNEAVAYFD MTSSGCNPDAAVYTCLIT FGNL
Sbjct: 474 EVMKVKGPAPNVRTYTILIRDLCKHSKLNEAVAYFDEMTSSGCNPDAAVYTCLITGFGNL 533

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           KKMDMVFGLLKE+KEKGYPPDGQLYNALIKLMTNRRMPDDAVRV
Sbjct: 534 KKMDMVFGLLKEMKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 577

[Close]

BLAST of Spo03618.1 vs. NCBI nr
Match: gi|731336637|ref|XP_010679367.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 292.4 bits (747), Expect = 9.000e-76
Identity = 135/164 (82.32%), Postives = 152/164 (92.68%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           N+ T SVLLSGWCR+KNLMEAG+IWNEMIDQGL PD++THNIML+GLLKV K+SDAIKLF
Sbjct: 386 NVKTYSVLLSGWCRVKNLMEAGKIWNEMIDQGLKPDLVTHNIMLNGLLKVKKRSDAIKLF 445

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
           E+MK KGP PNVR+YTIL+RDLCKH+K+ EAVAYFD M +SGC PDA VYTCLIT FGNL
Sbjct: 446 EIMKAKGPAPNVRSYTILMRDLCKHNKIKEAVAYFDEMRASGCEPDAGVYTCLITGFGNL 505

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           KKMDMVFGLLKE+KEKGYPPDG+LYNALIKLMTNRRMPDDA+R+
Sbjct: 506 KKMDMVFGLLKEIKEKGYPPDGRLYNALIKLMTNRRMPDDALRI 549

[Close]

BLAST of Spo03618.1 vs. NCBI nr
Match: gi|731336635|ref|XP_010679366.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 292.4 bits (747), Expect = 9.000e-76
Identity = 135/164 (82.32%), Postives = 152/164 (92.68%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           N+ T SVLLSGWCR+KNLMEAG+IWNEMIDQGL PD++THNIML+GLLKV K+SDAIKLF
Sbjct: 429 NVKTYSVLLSGWCRVKNLMEAGKIWNEMIDQGLKPDLVTHNIMLNGLLKVKKRSDAIKLF 488

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
           E+MK KGP PNVR+YTIL+RDLCKH+K+ EAVAYFD M +SGC PDA VYTCLIT FGNL
Sbjct: 489 EIMKAKGPAPNVRSYTILMRDLCKHNKIKEAVAYFDEMRASGCEPDAGVYTCLITGFGNL 548

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           KKMDMVFGLLKE+KEKGYPPDG+LYNALIKLMTNRRMPDDA+R+
Sbjct: 549 KKMDMVFGLLKEIKEKGYPPDGRLYNALIKLMTNRRMPDDALRI 592

[Close]

BLAST of Spo03618.1 vs. NCBI nr
Match: gi|720008129|ref|XP_010258534.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Nelumbo nucifera])

HSP 1 Score: 262.7 bits (670), Expect = 7.600e-67
Identity = 121/164 (73.78%), Postives = 141/164 (85.98%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           NL T SVLL+GWC++KNLMEAG++WNEMID+GL PD++ HNIML+GLL+  K+S+AIKLF
Sbjct: 415 NLQTYSVLLAGWCKVKNLMEAGKVWNEMIDKGLKPDIVAHNIMLEGLLRGKKRSEAIKLF 474

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
           E+MK KGP PNVR+YTILIRDLCK SK+ +AV YFD M   GC PD AVYTCLI  FGN 
Sbjct: 475 EIMKAKGPSPNVRSYTILIRDLCKGSKMEQAVEYFDEMLDCGCQPDPAVYTCLIVGFGNQ 534

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           KKMD V+GLLKE+KEKG PPDG+ YNALIKLMTNR+MPDDAVRV
Sbjct: 535 KKMDKVYGLLKEMKEKGCPPDGRTYNALIKLMTNRQMPDDAVRV 578

[Close]

BLAST of Spo03618.1 vs. NCBI nr
Match: gi|296081511|emb|CBI20034.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 261.2 bits (666), Expect = 2.200e-66
Identity = 123/164 (75.00%), Postives = 137/164 (83.54%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           NL T +VLL+GWCR+KNL+EAG  WNEMID+G  PD+I H+ ML+GLLK  KKSDAIKLF
Sbjct: 326 NLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLF 385

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
           EVMK KGP PNVRTYTILIRDLCK  K+ EAV YFD M  SGC PDAAVYTCLIT FGN 
Sbjct: 386 EVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQ 445

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           KKMD V+ LLKE+KEKG P DG+ YNALIKLMTNR+MPDDAVR+
Sbjct: 446 KKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRI 489

[Close]

BLAST of Spo03618.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S2T3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_000970 PE=4 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 1.300e-84
Identity = 155/164 (94.51%), Postives = 158/164 (96.34%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           N  T SVLLSGWCRMKNLMEAG+IWNEMIDQGLNPDV+THNIMLDGLLKVNKKSDAIKLF
Sbjct: 414 NTKTYSVLLSGWCRMKNLMEAGKIWNEMIDQGLNPDVVTHNIMLDGLLKVNKKSDAIKLF 473

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
           EVMKVKGP PNVRTYTILIRDLCKHSKLNEAVAYFD MTSSGCNPDAAVYTCLIT FGNL
Sbjct: 474 EVMKVKGPAPNVRTYTILIRDLCKHSKLNEAVAYFDEMTSSGCNPDAAVYTCLITGFGNL 533

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           KKMDMVFGLLKE+KEKGYPPDGQLYNALIKLMTNRRMPDDAVRV
Sbjct: 534 KKMDMVFGLLKEMKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 577

[Close]

BLAST of Spo03618.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CCN2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g121700 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 6.200e-76
Identity = 135/164 (82.32%), Postives = 152/164 (92.68%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           N+ T SVLLSGWCR+KNLMEAG+IWNEMIDQGL PD++THNIML+GLLKV K+SDAIKLF
Sbjct: 429 NVKTYSVLLSGWCRVKNLMEAGKIWNEMIDQGLKPDLVTHNIMLNGLLKVKKRSDAIKLF 488

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
           E+MK KGP PNVR+YTIL+RDLCKH+K+ EAVAYFD M +SGC PDA VYTCLIT FGNL
Sbjct: 489 EIMKAKGPAPNVRSYTILMRDLCKHNKIKEAVAYFDEMRASGCEPDAGVYTCLITGFGNL 548

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           KKMDMVFGLLKE+KEKGYPPDG+LYNALIKLMTNRRMPDDA+R+
Sbjct: 549 KKMDMVFGLLKEIKEKGYPPDGRLYNALIKLMTNRRMPDDALRI 592

[Close]

BLAST of Spo03618.1 vs. UniProtKB/TrEMBL
Match: A5AVH1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_028672 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.500e-66
Identity = 123/164 (75.00%), Postives = 137/164 (83.54%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           NL T +VLL+GWCR+KNL+EAG  WNEMID+G  PD+I H+ ML+GLLK  KKSDAIKLF
Sbjct: 371 NLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLF 430

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
           EVMK KGP PNVRTYTILIRDLCK  K+ EAV YFD M  SGC PDAAVYTCLIT FGN 
Sbjct: 431 EVMKAKGPSPNVRTYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQ 490

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           KKMD V+ LLKE+KEKG P DG+ YNALIKLMTNR+MPDDAVR+
Sbjct: 491 KKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRI 534

[Close]

BLAST of Spo03618.1 vs. UniProtKB/TrEMBL
Match: F6H1T3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0055g00750 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.500e-66
Identity = 123/164 (75.00%), Postives = 137/164 (83.54%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           NL T +VLL+GWCR+KNL+EAG  WNEMID+G  PD+I H+ ML+GLLK  KKSDAIKLF
Sbjct: 77  NLRTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLF 136

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
           EVMK KGP PNVRTYTILIRDLCK  K+ EAV YFD M  SGC PDAAVYTCLIT FGN 
Sbjct: 137 EVMKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQ 196

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           KKMD V+ LLKE+KEKG P DG+ YNALIKLMTNR+MPDDAVR+
Sbjct: 197 KKMDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRI 240

[Close]

BLAST of Spo03618.1 vs. UniProtKB/TrEMBL
Match: B9I9J7_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0014s11650g PE=4 SV=2)

HSP 1 Score: 258.8 bits (660), Expect = 7.600e-66
Identity = 118/164 (71.95%), Postives = 142/164 (86.59%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           NL T +VLL+GWCR+KNLMEAG IWNEM+D+G  PD++THNIML+GLL+  K+SDAIK F
Sbjct: 314 NLRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFF 373

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
           EVMK KGP P+VR+YTILIRDLCK +K+ EAV YF  M  SGC+PDAAVYTCL+T +GN 
Sbjct: 374 EVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNH 433

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           K+MDMV+ LLKE+KEKG PPDG+ YNALIKLMT++RMPDDAVR+
Sbjct: 434 KRMDMVYELLKEMKEKGCPPDGKTYNALIKLMTSQRMPDDAVRI 477

[Close]

BLAST of Spo03618.1 vs. ExPASy Swiss-Prot
Match: PP293_ARATH (Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 9.600e-62
Identity = 107/164 (65.24%), Postives = 133/164 (81.10%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           N+ T +VLL+GWCR++NL+EA  IWN+MIDQGL PD++ HN+ML+GLL+  KKSDAIKLF
Sbjct: 297 NMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLF 356

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
            VMK KGP PNVR+YTI+IRD CK S +  A+ YFD M  SG  PDAAVYTCLIT FG  
Sbjct: 357 HVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQ 416

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           KK+D V+ LLKE++EKG+PPDG+ YNALIKLM N++MP+ A R+
Sbjct: 417 KKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRI 460

[Close]

BLAST of Spo03618.1 vs. ExPASy Swiss-Prot
Match: PP382_ARATH (Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.800e-60
Identity = 105/164 (64.02%), Postives = 131/164 (79.88%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           N+ T +VLL+GWCR++NL+EA  IWN+MID GL PD++ HN+ML+GLL+  KKSDAIKLF
Sbjct: 296 NMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLF 355

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
            VMK KGP PNVR+YTI+IRD CK S +  A+ YFD M  SG  PDAAVYTCLIT FG  
Sbjct: 356 HVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQ 415

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           KK+D V+ LLKE++EKG+PPDG+ YNALIKLM N++MP+   R+
Sbjct: 416 KKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 459

[Close]

BLAST of Spo03618.1 vs. ExPASy Swiss-Prot
Match: PP294_ARATH (Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.800e-60
Identity = 105/164 (64.02%), Postives = 131/164 (79.88%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           N+ T +VLL+GWCR++NL+EA  IWN+MID GL PD++ HN+ML+GLL+  KKSDAIKLF
Sbjct: 297 NMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLF 356

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
            VMK KGP PNVR+YTI+IRD CK S +  A+ YFD M  SG  PDAAVYTCLIT FG  
Sbjct: 357 HVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQ 416

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           KK+D V+ LLKE++EKG+PPDG+ YNALIKLM N++MP+   R+
Sbjct: 417 KKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 460

[Close]

BLAST of Spo03618.1 vs. ExPASy Swiss-Prot
Match: PP129_ARATH (Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 1.300e-21
Identity = 56/161 (34.78%), Postives = 88/161 (54.66%), Query Frame = 1


		  
Query: 129 TNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLFEVM 188
           T S+LL GW +  NL +A E++ EMID G +PD++T++IM+D L K  +  +A+ +   M
Sbjct: 239 TYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSM 298

Query: 189 KVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNLKKM 248
                 P    Y++L+      ++L EAV  F  M  SG   D AV+  LI  F    +M
Sbjct: 299 DPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRM 358

Query: 249 DMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
             V+ +LKE+K KG  P+ +  N +++ +  R   D+A  V
Sbjct: 359 KNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDV 399

[Close]

BLAST of Spo03618.1 vs. ExPASy Swiss-Prot
Match: PPR27_ARATH (Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 8.200e-21
Identity = 54/151 (35.76%), Postives = 85/151 (56.29%), Query Frame = 1


		  
Query: 124 SENLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIK 183
           S NL T ++L+ G+ +  NL  + +++ EM+DQ + P+VI++N +++GL    K S+AI 
Sbjct: 293 SPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAIS 352

Query: 184 LFEVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFG 243
           + + M   G  PN+ TY  LI   CK+  L EA+  F  +   G  P   +Y  LI  + 
Sbjct: 353 MRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYC 412

Query: 244 NLKKMDMVFGLLKELKEKGYPPDGQLYNALI 275
            L K+D  F L +E++ +G  PD   YN LI
Sbjct: 413 KLGKIDDGFALKEEMEREGIVPDVGTYNCLI 443

[Close]

BLAST of Spo03618.1 vs. TAIR (Arabidopsis)
Match: AT3G62470.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 238.4 bits (607), Expect = 5.400e-63
Identity = 107/164 (65.24%), Postives = 133/164 (81.10%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           N+ T +VLL+GWCR++NL+EA  IWN+MIDQGL PD++ HN+ML+GLL+  KKSDAIKLF
Sbjct: 297 NMMTYTVLLNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLF 356

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
            VMK KGP PNVR+YTI+IRD CK S +  A+ YFD M  SG  PDAAVYTCLIT FG  
Sbjct: 357 HVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQ 416

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           KK+D V+ LLKE++EKG+PPDG+ YNALIKLM N++MP+ A R+
Sbjct: 417 KKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRI 460

[Close]

BLAST of Spo03618.1 vs. TAIR (Arabidopsis)
Match: AT5G14820.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 234.2 bits (596), Expect = 1.000e-61
Identity = 105/164 (64.02%), Postives = 131/164 (79.88%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           N+ T +VLL+GWCR++NL+EA  IWN+MID GL PD++ HN+ML+GLL+  KKSDAIKLF
Sbjct: 296 NMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLF 355

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
            VMK KGP PNVR+YTI+IRD CK S +  A+ YFD M  SG  PDAAVYTCLIT FG  
Sbjct: 356 HVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQ 415

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           KK+D V+ LLKE++EKG+PPDG+ YNALIKLM N++MP+   R+
Sbjct: 416 KKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 459

[Close]

BLAST of Spo03618.1 vs. TAIR (Arabidopsis)
Match: AT3G62540.1 (Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 234.2 bits (596), Expect = 1.000e-61
Identity = 105/164 (64.02%), Postives = 131/164 (79.88%), Query Frame = 1


		  
Query: 126 NLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLF 185
           N+ T +VLL+GWCR++NL+EA  IWN+MID GL PD++ HN+ML+GLL+  KKSDAIKLF
Sbjct: 297 NMMTYTVLLNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLF 356

Query: 186 EVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNL 245
            VMK KGP PNVR+YTI+IRD CK S +  A+ YFD M  SG  PDAAVYTCLIT FG  
Sbjct: 357 HVMKSKGPCPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQ 416

Query: 246 KKMDMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
           KK+D V+ LLKE++EKG+PPDG+ YNALIKLM N++MP+   R+
Sbjct: 417 KKLDTVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRI 460

[Close]

BLAST of Spo03618.1 vs. TAIR (Arabidopsis)
Match: AT1G77360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 105.1 bits (261), Expect = 7.200e-23
Identity = 56/161 (34.78%), Postives = 88/161 (54.66%), Query Frame = 1


		  
Query: 129 TNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIKLFEVM 188
           T S+LL GW +  NL +A E++ EMID G +PD++T++IM+D L K  +  +A+ +   M
Sbjct: 239 TYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSM 298

Query: 189 KVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFGNLKKM 248
                 P    Y++L+      ++L EAV  F  M  SG   D AV+  LI  F    +M
Sbjct: 299 DPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRM 358

Query: 249 DMVFGLLKELKEKGYPPDGQLYNALIKLMTNRRMPDDAVRV 290
             V+ +LKE+K KG  P+ +  N +++ +  R   D+A  V
Sbjct: 359 KNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDV 399

[Close]

BLAST of Spo03618.1 vs. TAIR (Arabidopsis)
Match: AT1G09820.1 (Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 102.4 bits (254), Expect = 4.600e-22
Identity = 54/151 (35.76%), Postives = 85/151 (56.29%), Query Frame = 1


		  
Query: 124 SENLGTNSVLLSGWCRMKNLMEAGEIWNEMIDQGLNPDVITHNIMLDGLLKVNKKSDAIK 183
           S NL T ++L+ G+ +  NL  + +++ EM+DQ + P+VI++N +++GL    K S+AI 
Sbjct: 293 SPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLINGLCNGGKISEAIS 352

Query: 184 LFEVMKVKGPPPNVRTYTILIRDLCKHSKLNEAVAYFDGMTSSGCNPDAAVYTCLITRFG 243
           + + M   G  PN+ TY  LI   CK+  L EA+  F  +   G  P   +Y  LI  + 
Sbjct: 353 MRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYC 412

Query: 244 NLKKMDMVFGLLKELKEKGYPPDGQLYNALI 275
            L K+D  F L +E++ +G  PD   YN LI
Sbjct: 413 KLGKIDDGFALKEEMEREGIVPDVGTYNCLI 443

The following BLAST results are available for this feature:

BLAST of Spo03618.1 vs. NCBI nr
BLAST of Spo03618.1 vs. UniProtKB/TrEMBL
BLAST of Spo03618.1 vs. ExPASy Swiss-Prot
BLAST of Spo03618.1 vs. TAIR (Arabidopsis)

BLAST of Spo03618.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902240620\|gb\|KNA26028.1\|	1.8e-84	94.5	hypothetical protein SOVF_0009...	[more]
gi\|731336637\|ref\|XP_010679367.1\|	9.0e-76	82.3	PREDICTED: pentatricopeptide r...	[more]
gi\|731336635\|ref\|XP_010679366.1\|	9.0e-76	82.3	PREDICTED: pentatricopeptide r...	[more]
gi\|720008129\|ref\|XP_010258534.1\|	7.6e-67	73.7	PREDICTED: pentatricopeptide r...	[more]
gi\|296081511\|emb\|CBI20034.3\|	2.2e-66	75.0	unnamed protein product [Vitis...	[more]

BLAST of Spo03618.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S2T3_SPIOL	1.3e-84	94.5	Uncharacterized protein OS=Spi...	[more]
A0A0J8CCN2_BETVU	6.2e-76	82.3	Uncharacterized protein OS=Bet...	[more]
A5AVH1_VITVI	1.5e-66	75.0	Putative uncharacterized prote...	[more]
F6H1T3_VITVI	1.5e-66	75.0	Putative uncharacterized prote...	[more]
B9I9J7_POPTR	7.6e-66	71.9	Uncharacterized protein (Fragm...	[more]

BLAST of Spo03618.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
PP293_ARATH	9.6e-62	65.2	Pentatricopeptide repeat-conta...	[more]
PP382_ARATH	1.8e-60	64.0	Pentatricopeptide repeat-conta...	[more]
PP294_ARATH	1.8e-60	64.0	Pentatricopeptide repeat-conta...	[more]
PP129_ARATH	1.3e-21	34.7	Pentatricopeptide repeat-conta...	[more]
PPR27_ARATH	8.2e-21	35.7	Pentatricopeptide repeat-conta...	[more]

BLAST of Spo03618.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G62470.1	5.4e-63	65.2	Pentatricopeptide repeat (PPR)...	[more]
AT5G14820.1	1.0e-61	64.0	Pentatricopeptide repeat (PPR)...	[more]
AT3G62540.1	1.0e-61	64.0	Pentatricopeptide repeat (PPR)...	[more]
AT1G77360.1	7.2e-23	34.7	Tetratricopeptide repeat (TPR)...	[more]
AT1G09820.1	4.6e-22	35.7	Pentatricopeptide repeat (PPR-...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 132..158 score: 0.
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 160..209 score: 6.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 221..280 score: 7.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 199..232 score: 1.8E-7coord: 234..266 score: 2.3E-4coord: 131..162 score: 2.2E-5coord: 163..197 score: 6.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 196..230 score: 11.608coord: 231..265 score: 9.821coord: 161..195 score: 10.753coord: 266..289 score: 6.708coord: 126..160 score: 10
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 109..289 score: 8.1
None	No IPR available	PANTHER	PTHR24015:SF429	SUBFAMILY NOT NAMED	coord: 109..289 score: 8.1

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043631	RNA polyadenylation
molecular_function	GO:0004652	polynucleotide adenylyltransferase activity