Spo03266.1 (mRNA) | SpinachBase

Overview


Name	Spo03266.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_01127 : 208601 .. 208954 (-)
Sequence length	354

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAACAACAATTTCAAGCTCCTCCATCAGCTCAAGGATATCCTCAAGGACCTCAACCATACCATTATCCTCCTCCTCCAAGTAATTATTACCCACATCACCCTTCACCTTATTATCATTACCCTTCAGTTTCTCCATATGGTGGTGGTGGCTTTGGTTTTCCTGCCGGTAGTTCATTCAACTCCGGTGGAAACACCAATGGATCCGGTACACAGACGAATGGAGACGTCAAAATCGGAAACAGTAAGGAGAAATCCGGAGGTGTTGACATTGGTAAGATTGGTGGAAACCATGGCAACCAAGGTGGGCAACAAGTTTCCGGGGATGTTAAGGCAGGCAACATTGGGTGTTGA

mRNA sequence

ATGCAACAACAATTTCAAGCTCCTCCATCAGCTCAAGGATATCCTCAAGGACCTCAACCATACCATTATCCTCCTCCTCCAAGTAATTATTACCCACATCACCCTTCACCTTATTATCATTACCCTTCAGTTTCTCCATATGGTGGTGGTGGCTTTGGTTTTCCTGCCGGTAGTTCATTCAACTCCGGTGGAAACACCAATGGATCCGGTACACAGACGAATGGAGACGTCAAAATCGGAAACAGTAAGGAGAAATCCGGAGGTGTTGACATTGGTAAGATTGGTGGAAACCATGGCAACCAAGGTGGGCAACAAGTTTCCGGGGATGTTAAGGCAGGCAACATTGGGTGTTGA

Coding sequence (CDS)

ATGCAACAACAATTTCAAGCTCCTCCATCAGCTCAAGGATATCCTCAAGGACCTCAACCATACCATTATCCTCCTCCTCCAAGTAATTATTACCCACATCACCCTTCACCTTATTATCATTACCCTTCAGTTTCTCCATATGGTGGTGGTGGCTTTGGTTTTCCTGCCGGTAGTTCATTCAACTCCGGTGGAAACACCAATGGATCCGGTACACAGACGAATGGAGACGTCAAAATCGGAAACAGTAAGGAGAAATCCGGAGGTGTTGACATTGGTAAGATTGGTGGAAACCATGGCAACCAAGGTGGGCAACAAGTTTCCGGGGATGTTAAGGCAGGCAACATTGGGTGTTGA

Protein sequence

MQQQFQAPPSAQGYPQGPQPYHYPPPPSNYYPHHPSPYYHYPSVSPYGGGGFGFPAGSSFNSGGNTNGSGTQTNGDVKIGNSKEKSGGVDIGKIGGNHGNQGGQQVSGDVKAGNIGC

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo03266	Spo03266	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo03266.1	Spo03266.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo03266.1.CDS.1	Spo03266.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo03266.1.exon.1	Spo03266.1.exon.1	exon

Homology

[Close]

BLAST of Spo03266.1 vs. NCBI nr
Match: gi|902186950|gb|KNA10807.1| (hypothetical protein SOVF_140890 [Spinacia oleracea])

HSP 1 Score: 227.6 bits (579), Expect = 1.100e-56
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


		  
Query: 1   MQQQFQAPPSAQGYPQGPQPYHYPPPPSNYYPHHPSPYYHYPSVSPYGGGGFGFPAGSSF 60
           MQQQFQAPPSAQGYPQGPQPYHYPPPPSNYYPHHPSPYYHYPSVSPYGGGGFGFPAGSSF
Sbjct: 1   MQQQFQAPPSAQGYPQGPQPYHYPPPPSNYYPHHPSPYYHYPSVSPYGGGGFGFPAGSSF 60

Query: 61  NSGGNTNGSGTQTNGDVKIGNSKEKSGGVDIGKIGGNHGNQGGQQVSGDVKAGNIGC 118
           NSGGNTNGSGTQTNGDVKIGNSKEKSGGVDIGKIGGNHGNQGGQQVSGDVKAGNIGC
Sbjct: 61  NSGGNTNGSGTQTNGDVKIGNSKEKSGGVDIGKIGGNHGNQGGQQVSGDVKAGNIGC 117

[Close]

BLAST of Spo03266.1 vs. NCBI nr
Match: gi|902185787|gb|KNA10552.1| (hypothetical protein SOVF_143280 [Spinacia oleracea])

HSP 1 Score: 98.6 bits (244), Expect = 7.700e-18
Identity = 71/117 (60.68%), Postives = 79/117 (67.52%), Query Frame = 1


		  
Query: 6   QAPPSA---QGYPQGPQPY---HYPPPPSNYYPHHPSPYYHYPSVSPYGGGGFGFPAGSS 65
           Q PP++   QGYP    PY   +YPPP   Y      PYY +   +PY      FP GS 
Sbjct: 2   QYPPASAPTQGYP----PYAACNYPPPNCGY-----PPYYSWGYPTPYNA----FP-GSV 61

Query: 66  FNSGGNTNGSGTQTNGDVKIGNSKEKSGGVDIGKIGGNHGNQGGQQVSGDVKAGNIG 117
           FNSGGNTNGSGTQ NGDVK+GNSKEKSGGVDIGKIGGNH N  GQQ++GDV  GNIG
Sbjct: 62  FNSGGNTNGSGTQENGDVKVGNSKEKSGGVDIGKIGGNHDNTKGQQIAGDVTLGNIG 104

[Close]

BLAST of Spo03266.1 vs. NCBI nr
Match: gi|731358461|ref|XP_010690762.1| (PREDICTED: uncharacterized transmembrane protein DDB_G0289901-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 92.4 bits (228), Expect = 5.500e-16
Identity = 69/118 (58.47%), Postives = 77/118 (65.25%), Query Frame = 1


		  
Query: 4   QFQAPPSAQ----GYPQGPQPYHYPPPPSNY-YPHHPSPYYHYPSVSPYGGGGFGFPAGS 63
           Q+  PP+      GY Q P       PPSN  YP    PYY +   +PY      FP GS
Sbjct: 2   QYPTPPTQTYPPYGYAQAPHAAPCYQPPSNCGYP----PYYSWGFPTPYNA----FP-GS 61

Query: 64  SFNSGGNTNGSGTQTNGDVKIGNSKEKSGGVDIGKIGGNHGNQGGQQVSGDVKAGNIG 117
            FNSGGNTNGSGTQ NG V +GNSKEKSGGVDIGKIGGNHGN+ GQQV+GDV  G+IG
Sbjct: 62  VFNSGGNTNGSGTQENGGVSVGNSKEKSGGVDIGKIGGNHGNRDGQQVTGDVTVGHIG 110

[Close]

BLAST of Spo03266.1 vs. NCBI nr
Match: gi|902185159|gb|KNA10444.1| (hypothetical protein SOVF_144360 [Spinacia oleracea])

HSP 1 Score: 85.9 bits (211), Expect = 5.200e-14
Identity = 62/115 (53.91%), Postives = 67/115 (58.26%), Query Frame = 1


		  
Query: 3   QQFQAPPSAQGYPQGPQPYHYPPPPSNYYPHHPSPYYHYPSVSPYGGGGFGFPAGSSFNS 62
           Q    PP AQGY  G  PY +P P        P P Y                 GS++NS
Sbjct: 4   QNCPPPPQAQGY--GYPPYCFPSPGPG-----PVPVY-----------------GSTYNS 63

Query: 63  GGNTNGSGTQTNGDVKIGNSKEKSGGVDIGKIGGNHGNQGGQQVSGDVKAGNIGC 118
           G N NGSG Q NGDVK+GNSK KSGGVDIG IGGNH NQGGQQ SG+V  GNIGC
Sbjct: 64  GNNVNGSGIQKNGDVKVGNSKAKSGGVDIGTIGGNHTNQGGQQSSGNVTLGNIGC 94

[Close]

BLAST of Spo03266.1 vs. NCBI nr
Match: gi|870848029|gb|KMT00318.1| (hypothetical protein BVRB_9g216320 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 78.6 bits (192), Expect = 8.200e-12
Identity = 50/83 (60.24%), Postives = 55/83 (66.27%), Query Frame = 1


		  
Query: 35  PSPYYHYPSVSPYGGGGFGFPAGSSFNSGGNTNGSGTQTNGDVKIGNSKEKSGGVDIGKI 94
           P+P   YP    +G   F  P    +NSGGN N SG Q NG VK+GNSK KSGGVDIG I
Sbjct: 5   PTPMQGYPQ---FGYPPFVVPGSQVYNSGGNVNHSGIQKNGGVKVGNSKAKSGGVDIGSI 64

Query: 95  GGNHGNQGGQQVSGDVKAGNIGC 118
           GGN GN GGQQ +GDV  GNIGC
Sbjct: 65  GGNIGNVGGQQKTGDVTLGNIGC 84

[Close]

BLAST of Spo03266.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU40_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_140890 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 7.600e-57
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1


		  
Query: 1   MQQQFQAPPSAQGYPQGPQPYHYPPPPSNYYPHHPSPYYHYPSVSPYGGGGFGFPAGSSF 60
           MQQQFQAPPSAQGYPQGPQPYHYPPPPSNYYPHHPSPYYHYPSVSPYGGGGFGFPAGSSF
Sbjct: 1   MQQQFQAPPSAQGYPQGPQPYHYPPPPSNYYPHHPSPYYHYPSVSPYGGGGFGFPAGSSF 60

Query: 61  NSGGNTNGSGTQTNGDVKIGNSKEKSGGVDIGKIGGNHGNQGGQQVSGDVKAGNIGC 118
           NSGGNTNGSGTQTNGDVKIGNSKEKSGGVDIGKIGGNHGNQGGQQVSGDVKAGNIGC
Sbjct: 61  NSGGNTNGSGTQTNGDVKIGNSKEKSGGVDIGKIGGNHGNQGGQQVSGDVKAGNIGC 117

[Close]

BLAST of Spo03266.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTD7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_143280 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.400e-18
Identity = 71/117 (60.68%), Postives = 79/117 (67.52%), Query Frame = 1


		  
Query: 6   QAPPSA---QGYPQGPQPY---HYPPPPSNYYPHHPSPYYHYPSVSPYGGGGFGFPAGSS 65
           Q PP++   QGYP    PY   +YPPP   Y      PYY +   +PY      FP GS 
Sbjct: 2   QYPPASAPTQGYP----PYAACNYPPPNCGY-----PPYYSWGYPTPYNA----FP-GSV 61

Query: 66  FNSGGNTNGSGTQTNGDVKIGNSKEKSGGVDIGKIGGNHGNQGGQQVSGDVKAGNIG 117
           FNSGGNTNGSGTQ NGDVK+GNSKEKSGGVDIGKIGGNH N  GQQ++GDV  GNIG
Sbjct: 62  FNSGGNTNGSGTQENGDVKVGNSKEKSGGVDIGKIGGNHDNTKGQQIAGDVTLGNIG 104

[Close]

BLAST of Spo03266.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BH65_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g216460 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 3.800e-16
Identity = 69/118 (58.47%), Postives = 77/118 (65.25%), Query Frame = 1


		  
Query: 4   QFQAPPSAQ----GYPQGPQPYHYPPPPSNY-YPHHPSPYYHYPSVSPYGGGGFGFPAGS 63
           Q+  PP+      GY Q P       PPSN  YP    PYY +   +PY      FP GS
Sbjct: 2   QYPTPPTQTYPPYGYAQAPHAAPCYQPPSNCGYP----PYYSWGFPTPYNA----FP-GS 61

Query: 64  SFNSGGNTNGSGTQTNGDVKIGNSKEKSGGVDIGKIGGNHGNQGGQQVSGDVKAGNIG 117
            FNSGGNTNGSGTQ NG V +GNSKEKSGGVDIGKIGGNHGN+ GQQV+GDV  G+IG
Sbjct: 62  VFNSGGNTNGSGTQENGGVSVGNSKEKSGGVDIGKIGGNHGNRDGQQVTGDVTVGHIG 110

[Close]

BLAST of Spo03266.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QT53_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_144360 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.600e-14
Identity = 62/115 (53.91%), Postives = 67/115 (58.26%), Query Frame = 1


		  
Query: 3   QQFQAPPSAQGYPQGPQPYHYPPPPSNYYPHHPSPYYHYPSVSPYGGGGFGFPAGSSFNS 62
           Q    PP AQGY  G  PY +P P        P P Y                 GS++NS
Sbjct: 4   QNCPPPPQAQGY--GYPPYCFPSPGPG-----PVPVY-----------------GSTYNS 63

Query: 63  GGNTNGSGTQTNGDVKIGNSKEKSGGVDIGKIGGNHGNQGGQQVSGDVKAGNIGC 118
           G N NGSG Q NGDVK+GNSK KSGGVDIG IGGNH NQGGQQ SG+V  GNIGC
Sbjct: 64  GNNVNGSGIQKNGDVKVGNSKAKSGGVDIGTIGGNHTNQGGQQSSGNVTLGNIGC 94

[Close]

BLAST of Spo03266.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BJQ7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g216320 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.700e-12
Identity = 50/83 (60.24%), Postives = 55/83 (66.27%), Query Frame = 1


		  
Query: 35  PSPYYHYPSVSPYGGGGFGFPAGSSFNSGGNTNGSGTQTNGDVKIGNSKEKSGGVDIGKI 94
           P+P   YP    +G   F  P    +NSGGN N SG Q NG VK+GNSK KSGGVDIG I
Sbjct: 5   PTPMQGYPQ---FGYPPFVVPGSQVYNSGGNVNHSGIQKNGGVKVGNSKAKSGGVDIGSI 64

Query: 95  GGNHGNQGGQQVSGDVKAGNIGC 118
           GGN GN GGQQ +GDV  GNIGC
Sbjct: 65  GGNIGNVGGQQKTGDVTLGNIGC 84

The following BLAST results are available for this feature:

BLAST of Spo03266.1 vs. NCBI nr
BLAST of Spo03266.1 vs. UniProtKB/TrEMBL
BLAST of Spo03266.1 vs. ExPASy Swiss-Prot
BLAST of Spo03266.1 vs. TAIR (Arabidopsis)

BLAST of Spo03266.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902186950\|gb\|KNA10807.1\|	1.1e-56	100.	hypothetical protein SOVF_1408...	[more]
gi\|902185787\|gb\|KNA10552.1\|	7.7e-18	60.6	hypothetical protein SOVF_1432...	[more]
gi\|731358461\|ref\|XP_010690762.1\|	5.5e-16	58.4	PREDICTED: uncharacterized tra...	[more]
gi\|902185159\|gb\|KNA10444.1\|	5.2e-14	53.9	hypothetical protein SOVF_1443...	[more]
gi\|870848029\|gb\|KMT00318.1\|	8.2e-12	60.2	hypothetical protein BVRB_9g21...	[more]

BLAST of Spo03266.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QU40_SPIOL	7.6e-57	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9QTD7_SPIOL	5.4e-18	60.6	Uncharacterized protein OS=Spi...	[more]
A0A0J8BH65_BETVU	3.8e-16	58.4	Uncharacterized protein OS=Bet...	[more]
A0A0K9QT53_SPIOL	3.6e-14	53.9	Uncharacterized protein OS=Spi...	[more]
A0A0J8BJQ7_BETVU	5.7e-12	60.2	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo03266.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo03266.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description