Spo02609.1 (mRNA) | SpinachBase

Overview


Name	Spo02609.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	T30E16.24
Location	chr3 : 6416534 .. 6418673 (-)
Sequence length	387

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCCAAGGATTTAATCATATAAAAGGTAATAATTTGTAAAACTAATACAATGAGATATACATGATAAAACAATTAGCCATAACCACACCGTATACACCCCCAAGAAGACCCTTTAGAAAACCAAGGTTTATGCACAATTAGACAAGAGAAGTTATCCTAAGAACAAAGTGAGAAAATAAGAACTTGGAGGTTTTATTTGAATAGAATCATAATGGTCTAACATATGGTACATAAGCGGGATTCTAGATAGGAAAAATTTTAAGAAGTTATCACTAATTTTTCGGTCAAACTTAATTGAAAAAATGGGTGAAAAAAGCAGGAAGAAACTAGTGATTTAGGCTTTGTTTGGTAAGGTGTCAAACGTTTTCATGGAAAACGATCTTCCCCTTTCCAATCATTTTACGTTGTTTGGTTTGGCAAGGGATAGAAAACAATTTTCCATAACTTTCTCAAAGGTGAAAAAACCTTTTCCATTTGAAAGGGAGGGAAACCACTTTTCCACCTTACCTCCCTCTCCCTTCTTGGCTTTTTCCCCTCAATCTTCACCATCTTCTCCCATTTTCTTTTAAGGAACCAAACAAAGGAAAACTAGTTTGGAATTGTGTTTTTCCTTGGAAAATGTTTTCCATGAAAATATTTTACACCAAAAACATTTTACACCAAGCCAAACGAAGCCTTACAGAAAGAGCCCTTGGCCAAGAAAGAAAACTTTAGCATTGCCATCTGTCACTGAAATTGCCTAATGCCAAATGTAAAGTTGAAACCATCAAAAGAAAACTTTAGCATTGGCTATTTGTCACTGAAATTTTGTCACCTAAAATGGTATACATATGTGATACCTCCATGAACTTCTCGAAACGAAAGTGTGTGAACTACCACTCCCAACACAATTCTTTCCTCCTTTAATGAGATTTAAATCTGGCAACCCCCTATTCCGAATCCCAATTCCTTATTTCCCATACATAAAATCCATTTAACTCCCTTAATCAGGTCAACCAATAAAAGCTCATTCTATCTGCTACACCTTAGGTCTTACAAATATTTGTGCTTTATAGCAACATATACTACCATACTTCACTGCCTACTCCAGAAGCTGCAAATCAGAATAGTTAAAGAAGAACCGGAAAATTGACCCTTATCTACAGAACAATTATAATTTCTACTGACTCGATGCAACAAACCTTGTATCTACTGTAATAATTTCTACAATCACAAATACTGAATAACTATAGAAAAAGCTTCACCATCAGTTCAAACGGGAAGGGAGCAATGGACAAACCTTTATCACCACGCTGGTAATCCTCCCATCTCAGCTCTTCATGACTTTTGTCTTTGTAAGCTGCCATAGCAGATATTGATTCCAACTTCCCAGCTTGGTTACCAGAACCTGCATCCGCTTCTAAAGTCGGTGTGTAATTAGCAACTCTACTTCCTCCCAAATTTGACTGCCCAAAGCCGCCGCCAAAAGTATTGGAACTTGACGCTCCTACATACAAGGAAGCCAAATCATGAATACAGAAGCCATATAGTTAACCAATTATAGCTATACATGTTTAATATGAAATGATTTATATGTCCAAACAATCAAAATTTACCAAATGGAGAAGTTGAGGCACCAAAAGTAGATGGTGTAGACCCAAAACCGGTGCTTCCAAAAGTAGATGTAGTTTGACCAAAGGATGGGCTAGAGCCAAAATTAAAAGATGGAGAACTAGAATTTGCTACATTGAATGACGGAGTGCTAGTAGCCCCAAAACCTGGAGTGCTATTAGTAGCTCCAAAGGTTGGAGTGGTAGCAGCACCAAACGCTTGAGTGGTCGGGGTGCCAAATGCAGAGGTGCCTCCAGCACCAAAGACAGGGGTGCTTGAAGATCCAAATGCTCCTCCTGACCCAAAAGAAGGGGAACTTGACACACCAAAGGCAGCTCCCGTGCTTCCGAAAGCTGAAGTAGGTGTTGAACCAAAGGTAGGAGCGCTGGGAGCTCCAAAAGTAGGGGCGCTTGTGGCGCCAAATGTTGACGTAGTTGATGATCCAAAAGCTGAGGAGCTAGTACCACCAAATGCAGGTTGGCTTGATGCACCAAATGGTGAAGAAGCACCAAATGCATTGCTGCCAAACGCAGGCTGTGATTGTTGA

mRNA sequence

ATGGCCCAAGGATTTAATCATATAAAAGATATTGATTCCAACTTCCCAGCTTGGTTACCAGAACCTGCATCCGCTTCTAAAGTCGAGGTGCCTCCAGCACCAAAGACAGGGGTGCTTGAAGATCCAAATGCTCCTCCTGACCCAAAAGAAGGGGAACTTGACACACCAAAGGCAGCTCCCGTGCTTCCGAAAGCTGAAGTAGGTGTTGAACCAAAGGTAGGAGCGCTGGGAGCTCCAAAAGTAGGGGCGCTTGTGGCGCCAAATGTTGACGTAGTTGATGATCCAAAAGCTGAGGAGCTAGTACCACCAAATGCAGGTTGGCTTGATGCACCAAATGGTGAAGAAGCACCAAATGCATTGCTGCCAAACGCAGGCTGTGATTGTTGA

Coding sequence (CDS)

ATGGCCCAAGGATTTAATCATATAAAAGATATTGATTCCAACTTCCCAGCTTGGTTACCAGAACCTGCATCCGCTTCTAAAGTCGAGGTGCCTCCAGCACCAAAGACAGGGGTGCTTGAAGATCCAAATGCTCCTCCTGACCCAAAAGAAGGGGAACTTGACACACCAAAGGCAGCTCCCGTGCTTCCGAAAGCTGAAGTAGGTGTTGAACCAAAGGTAGGAGCGCTGGGAGCTCCAAAAGTAGGGGCGCTTGTGGCGCCAAATGTTGACGTAGTTGATGATCCAAAAGCTGAGGAGCTAGTACCACCAAATGCAGGTTGGCTTGATGCACCAAATGGTGAAGAAGCACCAAATGCATTGCTGCCAAACGCAGGCTGTGATTGTTGA

Protein sequence

MAQGFNHIKDIDSNFPAWLPEPASASKVEVPPAPKTGVLEDPNAPPDPKEGELDTPKAAPVLPKAEVGVEPKVGALGAPKVGALVAPNVDVVDDPKAEELVPPNAGWLDAPNGEEAPNALLPNAGCDC

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo02609	Spo02609	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo02609.1	Spo02609.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02609.1.CDS.3	Spo02609.1.CDS.3	CDS
Spo02609.1.CDS.2	Spo02609.1.CDS.2	CDS
Spo02609.1.CDS.1	Spo02609.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02609.1.exon.3	Spo02609.1.exon.3	exon
Spo02609.1.exon.2	Spo02609.1.exon.2	exon
Spo02609.1.exon.1	Spo02609.1.exon.1	exon

Homology

[Close]

BLAST of Spo02609.1 vs. NCBI nr
Match: gi|8778762|gb|AAF79770.1|AC009317_29 (T30E16.24 [Arabidopsis thaliana])

HSP 1 Score: 76.6 bits (187), Expect = 3.400e-11
Identity = 56/141 (39.72%), Postives = 65/141 (46.10%), Query Frame = 1


		  
Query: 25  ASKVEVPPAPKTGVLEDPNAPPD------------PKEGELDTPKAAPV---------LP 84
           A K EV  AP  GVL++P APP+            PK G  D P A  +          P
Sbjct: 68  APKAEVLDAPNVGVLDEPKAPPELKVLLPNALPELPKAGAGDAPNAGELEEPNKGVLEAP 127

Query: 85  KAEVGVEPKVGALGAPKVGAL----------------VAPNVDVVDDPKAEELVPPNAGW 129
           KA V VEPK G L AP  G L                VAPN +V + PKA  L  P AG 
Sbjct: 128 KAGVFVEPKAGVLDAPNPGVLLPPNPVVFVAPNPGVFVAPNPEVFETPKAGVLEAPKAGV 187

[Close]

BLAST of Spo02609.1 vs. NCBI nr
Match: gi|976880129|gb|KVH69805.1| (hypothetical protein Ccrd_025604 [Cynara cardunculus var. scolymus])

HSP 1 Score: 68.9 bits (167), Expect = 7.100e-9
Identity = 49/101 (48.51%), Postives = 55/101 (54.46%), Query Frame = 1


		  
Query: 21  EPASASKVEVP-----PAPKTGVLEDPNAPP-DPKEGELDTPKAAPVLPKAEVGVEPKVG 80
           E  +A  +E P      AP  GVLE P A   DPK GEL+TP A PVLP A V V+PK G
Sbjct: 36  EDPNAGVLEAPNAGVLEAPNAGVLEAPKAGVLDPKTGELETPNAEPVLPNAGVDVQPKAG 95

Query: 81  ALGAPKVGALVAPNVDVVDDPKAEELVPPNAGWLDAPNGEE 116
            L AP  G LVAP   V+  PKA  L  PN G      G+E
Sbjct: 96  VLVAPNAGVLVAPKAGVLVAPKAGVLEDPNIGLRSYLIGDE 136

[Close]

BLAST of Spo02609.1 vs. NCBI nr
Match: gi|297837575|ref|XP_002886669.1| (hypothetical protein ARALYDRAFT_315354 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 65.9 bits (159), Expect = 6.000e-8
Identity = 51/128 (39.84%), Postives = 62/128 (48.44%), Query Frame = 1


		  
Query: 20  PEPASASKVEVPPAPKTGVLEDPNAPP--DPKEGELDTPKAAPVL-PKAEVG-------- 79
           PE  +     +P  PK G  + PNA    +P EG +  PKA  +L PKA+V         
Sbjct: 84  PELKALLPNALPELPKAGAGDTPNAGELEEPNEGVVAAPKAGVLLEPKADVLDAPNPGVL 143

Query: 80  VEPKVGALGAPKVGALVAPNVDVVDDPKAEELVPPNA--------GWLDAPNGEEAPNAL 129
           V P  G L AP  G LVAPN +V + P AE    PNA        G L+ P G + P  L
Sbjct: 144 VAPNPGVLVAPNPGVLVAPNAEVFEAPNAEVFEAPNAEVFEAPKAGVLEVPKGVDEPKVL 203

[Close]

BLAST of Spo02609.1 vs. NCBI nr
Match: gi|168040971|ref|XP_001772966.1| (predicted protein [Physcomitrella patens])

HSP 1 Score: 60.1 bits (144), Expect = 3.300e-6
Identity = 50/117 (42.74%), Postives = 59/117 (50.43%), Query Frame = 1


		  
Query: 20  PEPASASKVEVP-----PAPKTGVLEDPNAPPDPKEGELDTPKAAPV-LPKAEVGVEPKV 79
           P+P     ++ P      AP  GVLE PNA      G L+ P A  +  P A V   P  
Sbjct: 21  PKPDVLGALDTPNAGVLEAPNAGVLEAPNA------GVLEAPNAGVLEAPNAGVLEAPNA 80

Query: 80  GALGAPKVGALVAPNVDVVDDPKAEELVPPNAGWLDAPNGE--EAPNALL---PNAG 126
           G L AP  G L APN  V++ P A  L  PNAG L+APN    EAPNA +   PNAG
Sbjct: 81  GVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 131

[Close]

BLAST of Spo02609.1 vs. UniProtKB/TrEMBL
Match: Q9LQ49_ARATH (T30E16.24 OS=Arabidopsis thaliana PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.400e-11
Identity = 56/141 (39.72%), Postives = 65/141 (46.10%), Query Frame = 1


		  
Query: 25  ASKVEVPPAPKTGVLEDPNAPPD------------PKEGELDTPKAAPV---------LP 84
           A K EV  AP  GVL++P APP+            PK G  D P A  +          P
Sbjct: 68  APKAEVLDAPNVGVLDEPKAPPELKVLLPNALPELPKAGAGDAPNAGELEEPNKGVLEAP 127

Query: 85  KAEVGVEPKVGALGAPKVGAL----------------VAPNVDVVDDPKAEELVPPNAGW 129
           KA V VEPK G L AP  G L                VAPN +V + PKA  L  P AG 
Sbjct: 128 KAGVFVEPKAGVLDAPNPGVLLPPNPVVFVAPNPGVFVAPNPEVFETPKAGVLEAPKAGV 187

[Close]

BLAST of Spo02609.1 vs. UniProtKB/TrEMBL
Match: A0A118JFJ2_CYNCS (Uncharacterized protein OS=Cynara cardunculus var. scolymus GN=Ccrd_025604 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 5.000e-9
Identity = 49/101 (48.51%), Postives = 55/101 (54.46%), Query Frame = 1


		  
Query: 21  EPASASKVEVP-----PAPKTGVLEDPNAPP-DPKEGELDTPKAAPVLPKAEVGVEPKVG 80
           E  +A  +E P      AP  GVLE P A   DPK GEL+TP A PVLP A V V+PK G
Sbjct: 36  EDPNAGVLEAPNAGVLEAPNAGVLEAPKAGVLDPKTGELETPNAEPVLPNAGVDVQPKAG 95

Query: 81  ALGAPKVGALVAPNVDVVDDPKAEELVPPNAGWLDAPNGEE 116
            L AP  G LVAP   V+  PKA  L  PN G      G+E
Sbjct: 96  VLVAPNAGVLVAPKAGVLVAPKAGVLEDPNIGLRSYLIGDE 136

[Close]

BLAST of Spo02609.1 vs. UniProtKB/TrEMBL
Match: D7KXT7_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_315354 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.200e-8
Identity = 51/128 (39.84%), Postives = 62/128 (48.44%), Query Frame = 1


		  
Query: 20  PEPASASKVEVPPAPKTGVLEDPNAPP--DPKEGELDTPKAAPVL-PKAEVG-------- 79
           PE  +     +P  PK G  + PNA    +P EG +  PKA  +L PKA+V         
Sbjct: 84  PELKALLPNALPELPKAGAGDTPNAGELEEPNEGVVAAPKAGVLLEPKADVLDAPNPGVL 143

Query: 80  VEPKVGALGAPKVGALVAPNVDVVDDPKAEELVPPNA--------GWLDAPNGEEAPNAL 129
           V P  G L AP  G LVAPN +V + P AE    PNA        G L+ P G + P  L
Sbjct: 144 VAPNPGVLVAPNPGVLVAPNAEVFEAPNAEVFEAPNAEVFEAPKAGVLEVPKGVDEPKVL 203

[Close]

BLAST of Spo02609.1 vs. UniProtKB/TrEMBL
Match: A9T316_PHYPA (Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_18212 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.300e-6
Identity = 50/117 (42.74%), Postives = 59/117 (50.43%), Query Frame = 1


		  
Query: 20  PEPASASKVEVP-----PAPKTGVLEDPNAPPDPKEGELDTPKAAPV-LPKAEVGVEPKV 79
           P+P     ++ P      AP  GVLE PNA      G L+ P A  +  P A V   P  
Sbjct: 21  PKPDVLGALDTPNAGVLEAPNAGVLEAPNA------GVLEAPNAGVLEAPNAGVLEAPNA 80

Query: 80  GALGAPKVGALVAPNVDVVDDPKAEELVPPNAGWLDAPNGE--EAPNALL---PNAG 126
           G L AP  G L APN  V++ P A  L  PNAG L+APN    EAPNA +   PNAG
Sbjct: 81  GVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAGVLEAPNAG 131

The following BLAST results are available for this feature:

BLAST of Spo02609.1 vs. NCBI nr
BLAST of Spo02609.1 vs. UniProtKB/TrEMBL
BLAST of Spo02609.1 vs. ExPASy Swiss-Prot
BLAST of Spo02609.1 vs. TAIR (Arabidopsis)

BLAST of Spo02609.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4


Match Name	E-value	Identity	Description
gi\|8778762\|gb\|AAF79770.1\|AC009317_29	3.4e-11	39.7	T30E16.24 [Arabidopsis thalian...	[more]
gi\|976880129\|gb\|KVH69805.1\|	7.1e-9	48.5	hypothetical protein Ccrd_0256...	[more]
gi\|297837575\|ref\|XP_002886669.1\|	6.0e-8	39.8	hypothetical protein ARALYDRAF...	[more]
gi\|168040971\|ref\|XP_001772966.1\|	3.3e-6	42.7	predicted protein [Physcomitre...	[more]

BLAST of Spo02609.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 4


Match Name	E-value	Identity	Description
Q9LQ49_ARATH	2.4e-11	39.7	T30E16.24 OS=Arabidopsis thali...	[more]
A0A118JFJ2_CYNCS	5.0e-9	48.5	Uncharacterized protein OS=Cyn...	[more]
D7KXT7_ARALL	4.2e-8	39.8	Putative uncharacterized prote...	[more]
A9T316_PHYPA	2.3e-6	42.7	Predicted protein (Fragment) O...	[more]

BLAST of Spo02609.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo02609.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description