Spo02481.1 (mRNA)

Overview
NameSpo02481.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionProtease-associated RING/U-box zinc finger-containing protein
Locationchr3 : 5245464 .. 5251997 (+)
Sequence length531
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAATGGTGGGCATATTATGTCTCCTAAGCTGTATTAACACCGCGTGCCACGAAGATGATGCAGAGATTTATATAACATTGAGGCCTAAAGTGACTTATTCTACCAAGTCCATGCCTAAAGGAGACGACGAAAAACGATGCTCGATATGTTTGGATGATTATGAAGATGGTGATATGGTTGAGTTTCTTGATTGCTTCCATCTTTATCATGGTCATTGTATTGATCAATGGCTTCCCCTTAGTCAGACTTGTCCTATTTGCCGCTTTCAATGCTGAATTATTGATCATTTATTTGGTAGTAATGTTATCTTTGAAGTTGTTTGATTGTGCTTTGTTGTTGAATTGCTTTCAAACAATTTGTAAGGTGTTGTTGTATGTAAATATTTCAATTTGTGTTATCTATGTGATATATTTGTATATGATTATGAACAAGTCTGAGTTACTTAATGTGTTTGTTACCAATTCTGCTCATGACCATTTGATGGAAATCATGGAATAGTGATTGGTGCTTAATTAAAGATGGCGCTGGGTCGGGCTGGTTTGAGGTACGGCACATGCCATCACAAAAAAAGCACGGCCCTGCACCAGGACGAAGTCGTGGGCCATGGGCTAAGCTCGCAACGCATTTTTTTGGGGAAAACGCGACTTGGCACGACAAAACACGTTCAATTGAGTGAAATCGGATTTAGTCACTAAAGCACTGTCTGAAGCCTGGCAAGTGGGCAATTGGGCATGGGTCGTGCCTGGACCACATTTTTGAAATTTTCAGCATAGTCTGGCCAACACATAACAAGTGGGTTTGGCATAAACTAAGCCCGTTCAAGTGTGGCACGTAGGCTAAGCATGAATCTTACCCAACCTGACCCATGCACAACCATCGATCTTTACGCTTAATACAAATCAAGGCAATATAATGATTCATTATAAGGTGTAAATTAAAAAACATTCCCCGTGCCAATCATGTTATGAAAATCGCTCATAAATTCATAATACGAAATCTGTCGTATTTTTTATTTAGTCAATTTTGAAAGATGAGCTAAAAGTTGGATTAGGAAGGGAAAGAGGATAGATAGAAATGAAACATCAATTGTTTGATTTTCTTAACAAATTATTATTATACACGAATATGACCAAAGTTTCAAATCTAATCCAAACCAACAAAAAAAGAAAATTTAGTTTGGGTGAAGTAACTATCTAATCCAAACTAATCATAAGTATCCAATATTTTCAACCAAATATGATTCAAACAACCGCAATTTGGATTATACACCCGGGTGTACAGTGTTCATGGTGCACCCTGAAGAACATTTGTTGAGTATCTAAAGAACATGAAGAATGATTTCAATGTACATATACAAATGAAATATTTGCAATATATGTACTATGGATTTGAACTATATGTTCATTTTAGTATATGTTCTATGAATATGAATGATATGTTCTTTGCATTTGAACTATATGTTCTTTTAAAAATAAGGTGCACAGTGAGCATTGTGCACCCGGGTATATAAACCATATTTTGTCAAACAGCCTATTTGCCATGTAAATCGTACTGGTTGCACCGACCCAAAAAGCAACACAAATTACGATCCCGAACCACGTAAAACTGTAAATTAACTTAACCCGAGGATTTATTTTTATAGTCATAGGCACGGCTGCTCGGCACGAGCATGGCTTAGTGCCAAGCCTAGTAGACCCTTACTTAGCCGCTCAGTGCCAAGCCCTCGTAGACCATCAAGGGCACAATCAAGTACGGAGTAGTCAATTTGACAGTTAGGCGCACAACCGCCAAAAAGATCCCTCCTCAGGTTCTTCAGCGCAGCATCAATGGAAGTTTCACGGACTGAAAACCCCAAAAATTCCGGTAATTGCTATTATTTTTATGTAGAACCCTTTCTCTATTCAATTTCGCTTTAAGGTTAACTGCAATCGTATAAATTTATGATTTCTTAATTTAATTTACTGTATATATGTTCATCCCCATTTTATGAGCAATTTGAATTATTGCCCAAATTGATGGATTTAACCCTAGATTTTAGTAATTTGTTGCAGATAATCGTTTCAGTATGCGCTCTGATCTATGTTCTAGGTTCACAAATTTGAGAAATGTTTGAGATAAATTGAGCTAATTTTTTAGTTAAAAATCTCAATTTTATTCCCCGTTTTGTTTCGAATTAGTCCTTGAAGTGATTATTTTGAATTAGCTTATCGCTCATACAAGAATTTTCTGTTTTAATTTGGTAACCCCCATAAAATTAGGGATTTTAGGAATGCTTAATACAGCTGCAAAATGTGGACTAGTTTTTCAAGTTGGGGGAAATCTATTTGATGATCTAGGTATGGCTAACATCATTCCAAGCAAGTAGCAATAATGGATTAGGATTTTCAAGGGAAGAACCTTCTTCCCCGCCGAAAACACTAGTGAAAATTGATTTAGTTTTTCAAGCCTAGTTAATCAGTTGAACTCCATACTAGTTGAAGTATGTGTGTGTGACTGAGTTTCTTGAGCAATTTGAAAAACAGTGACGGGGATTCATTGTTCCGGAATTGCTAGATTTGCAGTTTGATGATGGTAGAGTGCTATAAGTTAACTTTTGCTTGTACTGAGAATCTGAGATTCTGAGAATGAAGGCTGACTATCTGTGGCTTTGTTCAATCTGCACCAAGTACTTGTTTGAGCCTTCTCAGTCTTTAGTACATTAGGAGTACAATTGCAATTTTCTGCAAGATTATAATGCAGTTTAGGCTCTATTTGCACTGATTATAAAAGTGTTCAATCTACAAGACAAGGTTACAGAAGAAACAATGTTCATATATAGGCTTTTTAACTGAGACAAGGTTATAGAAGAAACAATGTTCATAACTTGATATATAGGCTTGTTTAACTAATACACGCCTATCTAAATTTTTTTGTTGAAATCTCAATTTTATCTTCCCTCAAAAAACAAAAAACAAAAACAAACTTGTGTCTTGTGCTGAAGAAAAAGTATCATCTGCTGATATGAGCAATGAAATAATCCATTTCTAAGCGAGAACTTCCACCATCTGCAACTGAACCTCGGACTGCACCACCTAGTTCTTCTGCCCTTTTCCTCATATCTTCTCCTTCCTTTGATGTCATCAACAGTCTTACTGTGTCCTCCACCATAGTTGATGTTACTCTCTTAGCTCTTTGTTCCCACTCCCTGACTAACAACCCAGTCTTTAGAACTTCCGTTATCAAAATACTGTTTTTTGGCTGATCAGAATGCATAGGCCATGCTGCTATTGGCACTCCCATGCTGATACTCTCCATACACGAGTTCCAACCACAATGACTCATAAATCCTCCTGTAGATGGGTGCGCAAGAATTTCAAGCTGAGGTGCCCAGTCTCTTACCACCAATCCCCTGTTCTCTATTCTGTTTTCGTAACCTTTTGGCAGCTGAGGCCTTTTCACATCATCTTCTGCGGAAATATCTAATCCATCAGCACTTCTTACAACCCATAGAAACTTTTGGCCACTTCTTTCCAATCCAACTGCCAACTCGCTGATCTGATCTTCTGTCATTGATATTGTTGTTCCAAATGATACATAAATCACTGAATCTTTCTCTTGTTTGTCCAGCCACTCTAGGCATCTATGTCTGGTTTTACTGCTTTTTATTTCAACTGGATTCAAAGGTCCAATTGCGAAAAGCTTTTTGTTGGTGTTTGTAGGTAGTTTTGCCAGTAAGTTTACATATTTACCTTCAATCTCTCTGCATGTGTTGAAGAGTCTTCCGCTCTCAAAATTCAAAACTTTGTATTGATTTGCTACAAAGTCTTGAAATTCTGGTGTAAAGCACCCTTCACTTGAGGGGATGATTCCGTCTTTTGGGATATCAGAATCTAGATGAAAACTCGTGTCTGTTATTGATTCCCAAATGTGGAAGAATATGGTGAAGGCAGAGACACTGTGTAGGGCATATGACTCCGCATTTGGGATTAATTTCACATCTTGAACAACTGAAGCCATTAGAGTATCATGAACAACGATGATTCTCCGATACTTGGTTGAGAGTTCCTGTAAAAGTCGGAACACAGGTTTACGGAGTTGTAAGGAAGCATCGAAAAGTGGTTGGAGGTGACCAGGGAATTTGGTATCAGCACTATATTTGGGAGGTTTTTTGGTAAAAGGAGGTAGTTGTAAGTCATGGAAGTGCATTTTGTGAGTATTTTGTGGGTCCCAACCATGGAGGCGTTGTTTGGCTTGGCGGTTATGTGCTATGGATCCTGTAAAATGAATTGGTATGCCATATGAGACTATAAGATTTGAAAGATGGAGAGTCTCATTGAGATGGCCTTGCATTGGGAAGGGTACTATGATTGCTGCAACTGAGGGATGTTTAAGGATATATTCTTGATCATTTTGATCTGCCATTTTTGGTCATATCTTGGGTTTAGAGGATGTAGCTTTTATATAGTATTTCGTAGAAGATTAGCATGAATATGGACAGACGTCATATTTGACATTCATACCTTATCCTTTTTTTTAATATTCAAACCTCTCTTTCATTACTCTTGGGTGCTACATTTGGGGTTTAGAAGAACACGTCTTGTGTTATATATTTGTTGGATCATTTATATCTCCCGGCCTTTTCCTGCCGCTTAAGTAGTGACATATTGAAAAATCTACTGATAGATTTTTACTGTGATTTGAGAAGTGACAACTTTTCGAGATATCTTAAATAGTACTACGTATATGTAATTTACTTCAGAGTTCAGATGGGGAATATTACATTGCAGCATTTTTTGCCATTTGTATACAATCAATTTCTGTCCTTGTCATGATTGCTTGTATTGTTTGCTTAGATCTTTGATTATTGCAAAACTCAGTACCTAACCATGAGAAAAGAAGACAGGTAGCTGTCATCATTTGGTAGTTTAGTTGAAACCTGCAAGTTTGTAAAACCCTCTTTACAAACTTTTATGTATTTGGCTCCGTTTGTTTTGACGGAAAACGTTTTCAAAAAAATGTTTTTCCCATTTTCTTGTGCTTGTTTTGTTAAGGGTGAAAAACAATTTTCCCAATGGTGGAAAACTCTTTTCCTTTTATAAAAAAGGAATGTCACATTATCTTTTCTACTCTGTACATCCCTTATTCTCTCCTCCTATCCATCATCTCCTTTCACTTCCATTTCCTTTTCCTCTGTGACTTTTCTTGTAAGAAAACAATTTTACAATTGTGTTTTCCGTTGAAAATTGTTTTCCATTAAAAATGTTTTCGTTGAAACAAACGGAACCCTAGTTTAAGCACCAGTTTTTGCTAAGTAATCGCCATTTGATGTTTGATATTTGCTTTGAAAATTTTTGTCGGTAGGGCATTTTTGTTGATGCATGATGCGTAATATTAATATATATTATAATCTGATCCTTTTTTGGTTTATAGGGAGCCAAAAAAGGCAGTAATGTACCATACAACCTCCAAGACTACACCGACTAAGATAATTATTACACTGATGTTATGGTTACTCAAGAGAGATATTGCTAAACTGAAAGGATAAGAAAATTGGGCACGAAGAAAAGCTAGTGAAGTAAGACACGTGGAGTATGCTGAATGCAGTTTTGCTAATGTGGGAAGGACATTCATTAGTTGCTGAACTGCTGTAGTAATTGGGCGGTTTCCCACCAAATTGATCAAGCTACATGTAGATATATTGATTTTCAACAACAGTTGCAATCAAATTGATTGATTTCCAACTGTTTTTCTCCCCCTCTTTCGCTGTTTGCAATATTTTGCTAGCTGGTGTTATATGGCCTAGCATGGGGAACTCTTAAATTTCCTCGCACAGTTGGGCCATTCTCTGTTTTCTCTGATTGAGAATGTGATAAACATTCAGGAATGTGATAAGCATGTTGTTATAATCAGTACTGCAGGTGAAAGAGATAGCCATTTCGGCTATTTATTGGTGTTAGACTGATAAAGTTCAAGTCAACATCAGCAAAAGGATGAAAATCTGTTATTATCTAAGATAGATTCTTCACTGTAAAATTTATTCAGGGTATTAAAACTACCATTGTAATATAGATTTTTTGTCAGGTATATCAATGAGTTTACACTTGTAGATATGCTCAACTACTAAAGTTATTGATAATTCATCTCCAGCTTTTATGTTTCTAAATTCAGTTACACATTCTGTTTGTGTAGGGGCACGGGGCACGAGGCACGCGGCCACCAGAAGATCCCATTCTGTCTCGATCAGGAACGTTTGGTTTGATTCTACCACAAATTTCATACAACGGTACGTCATGGCTTATGCAAGATATTGCTACCTACTTGTTTAAGGAAGTTGTGACCTTATTATTGATGATTTTGGTCCTTTGCCTTTTGGTTGAATGGTCCTATGTCAGTTAATGCTGATATCAATGGGTGATTCTACCTATCACACTGACATAACAACCTATCATGGTTGTCCTTAAATGCAATTTGGCTCAAGGGTAAACTTGTGTAGTTGAGCTTGCTAATTTGTGATAGGTGTTGGTTCAGTAGAGTCTATTCTTCTTATCTAA

mRNA sequence

ATGCCAATGGTGGGCATATTATGTCTCCTAAGCTGTATTAACACCGCGTGCCACGAAGATGATGCAGAGATTTATATAACATTGAGGCCTAAAGTGACTTATTCTACCAAGTCCATGCCTAAAGGAGACGACGAAAAACGATGCTCGATATGTTTGGATGATTATGAAGATGGTGATATGGTTGAGTTTCTTGATTGCTTCCATCTTTATCATGGCACGGCTGCTCGGCACGAGCATGGCTTAGTGCCAAGCCTAGTAGACCCTTACTTAGCCGCTCAGTGCCAAGCCCTCGTAGACCATCAAGGGCACAATCAAGCGCACAACCGCCAAAAAGATCCCTCCTCAGGTTCTTCAGCGCAGCATCAATGGAAGTTTCACGGACTGAAAACCCCAAAAATTCCGGGGCACGGGGCACGAGGCACGCGGCCACCAGAAGATCCCATTCTGTCTCGATCAGGAACGTTTGGTTTGATTCTACCACAAATTTCATACAACGGTGTTGGTTCAGTAGAGTCTATTCTTCTTATCTAA

Coding sequence (CDS)

ATGCCAATGGTGGGCATATTATGTCTCCTAAGCTGTATTAACACCGCGTGCCACGAAGATGATGCAGAGATTTATATAACATTGAGGCCTAAAGTGACTTATTCTACCAAGTCCATGCCTAAAGGAGACGACGAAAAACGATGCTCGATATGTTTGGATGATTATGAAGATGGTGATATGGTTGAGTTTCTTGATTGCTTCCATCTTTATCATGGCACGGCTGCTCGGCACGAGCATGGCTTAGTGCCAAGCCTAGTAGACCCTTACTTAGCCGCTCAGTGCCAAGCCCTCGTAGACCATCAAGGGCACAATCAAGCGCACAACCGCCAAAAAGATCCCTCCTCAGGTTCTTCAGCGCAGCATCAATGGAAGTTTCACGGACTGAAAACCCCAAAAATTCCGGGGCACGGGGCACGAGGCACGCGGCCACCAGAAGATCCCATTCTGTCTCGATCAGGAACGTTTGGTTTGATTCTACCACAAATTTCATACAACGGTGTTGGTTCAGTAGAGTCTATTCTTCTTATCTAA

Protein sequence

MPMVGILCLLSCINTACHEDDAEIYITLRPKVTYSTKSMPKGDDEKRCSICLDDYEDGDMVEFLDCFHLYHGTAARHEHGLVPSLVDPYLAAQCQALVDHQGHNQAHNRQKDPSSGSSAQHQWKFHGLKTPKIPGHGARGTRPPEDPILSRSGTFGLILPQISYNGVGSVESILLI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo02481Spo02481gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo02481.1Spo02481.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo02481.1.exon.1Spo02481.1.exon.1exon
Spo02481.1.exon.2Spo02481.1.exon.2exon
Spo02481.1.exon.3Spo02481.1.exon.3exon
Spo02481.1.exon.4Spo02481.1.exon.4exon
Spo02481.1.exon.5Spo02481.1.exon.5exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo02481.1.CDS.1Spo02481.1.CDS.1CDS
Spo02481.1.CDS.2Spo02481.1.CDS.2CDS
Spo02481.1.CDS.3Spo02481.1.CDS.3CDS
Spo02481.1.CDS.4Spo02481.1.CDS.4CDS
Spo02481.1.CDS.5Spo02481.1.CDS.5CDS


Homology
The following BLAST results are available for this feature:
BLAST of Spo02481.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo02481.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo02481.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo02481.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 43..72
score: 1.
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 42..71
score: 1.