Spo02146.1 (mRNA) | SpinachBase

Overview


Name	Spo02146.1
Type	mRNA
Organism	Spinacia oleracea (Spinach)
Description	WGS project CBUC00000000 data, cultivar Chinese Spring, contig v443_2713
Location	SpoScf_02114 : 59408 .. 59791 (-)
Sequence length	384

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATCAGAAACATCTGCTGCTCCACAAGCAGTGTAGAAATCATACAACTGGGTCGGCCAATGAATCTAGACCGTCCATTAAAGGTAACAAGAAACAACAATAGATGGAGATCACTATGGAAGAAGCTGATGAGAGAGAAAAGGAAGATTAGAATATTCGACTGTTCTACGGTGCATCCTTCAGAGGTACACCTCCCTGGGTATGATCCTCACACGTATGCACAGAACTTTGATCAAGGCTTGATGTGGGATGATGAACCTGATAGCTTGTCTCGTTCTTTCTCTATGCGTTTTGCTGCTCCCACCACTTTTAAGAAGAGAAGCGTTATTACTGATGTGGGCCATGATCATCATCATGATGTTGTAATTTGTGTTTTTTGA

mRNA sequence

ATGGAGATCAGAAACATCTGCTGCTCCACAAGCAGTGTAGAAATCATACAACTGGGTCGGCCAATGAATCTAGACCGTCCATTAAAGGTAACAAGAAACAACAATAGATGGAGATCACTATGGAAGAAGCTGATGAGAGAGAAAAGGAAGATTAGAATATTCGACTGTTCTACGGTGCATCCTTCAGAGGTACACCTCCCTGGGTATGATCCTCACACGTATGCACAGAACTTTGATCAAGGCTTGATGTGGGATGATGAACCTGATAGCTTGTCTCGTTCTTTCTCTATGCGTTTTGCTGCTCCCACCACTTTTAAGAAGAGAAGCGTTATTACTGATGTGGGCCATGATCATCATCATGATGTTGTAATTTGTGTTTTTTGA

Coding sequence (CDS)

ATGGAGATCAGAAACATCTGCTGCTCCACAAGCAGTGTAGAAATCATACAACTGGGTCGGCCAATGAATCTAGACCGTCCATTAAAGGTAACAAGAAACAACAATAGATGGAGATCACTATGGAAGAAGCTGATGAGAGAGAAAAGGAAGATTAGAATATTCGACTGTTCTACGGTGCATCCTTCAGAGGTACACCTCCCTGGGTATGATCCTCACACGTATGCACAGAACTTTGATCAAGGCTTGATGTGGGATGATGAACCTGATAGCTTGTCTCGTTCTTTCTCTATGCGTTTTGCTGCTCCCACCACTTTTAAGAAGAGAAGCGTTATTACTGATGTGGGCCATGATCATCATCATGATGTTGTAATTTGTGTTTTTTGA

Protein sequence

MEIRNICCSTSSVEIIQLGRPMNLDRPLKVTRNNNRWRSLWKKLMREKRKIRIFDCSTVHPSEVHLPGYDPHTYAQNFDQGLMWDDEPDSLSRSFSMRFAAPTTFKKRSVITDVGHDHHHDVVICVF

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Spo02146	Spo02146	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Spo02146.1	Spo02146.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02146.1.CDS.1	Spo02146.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Spo02146.1.exon.1	Spo02146.1.exon.1	exon

Homology

[Close]

BLAST of Spo02146.1 vs. NCBI nr
Match: gi|902213787|gb|KNA17336.1| (hypothetical protein SOVF_080840 [Spinacia oleracea])

HSP 1 Score: 272.3 bits (695), Expect = 4.200e-70
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


		  
Query: 1   MEIRNICCSTSSVEIIQLGRPMNLDRPLKVTRNNNRWRSLWKKLMREKRKIRIFDCSTVH 60
           MEIRNICCSTSSVEIIQLGRPMNLDRPLKVTRNNNRWRSLWKKLMREKRKIRIFDCSTVH
Sbjct: 1   MEIRNICCSTSSVEIIQLGRPMNLDRPLKVTRNNNRWRSLWKKLMREKRKIRIFDCSTVH 60

Query: 61  PSEVHLPGYDPHTYAQNFDQGLMWDDEPDSLSRSFSMRFAAPTTFKKRSVITDVGHDHHH 120
           PSEVHLPGYDPHTYAQNFDQGLMWDDEPDSLSRSFSMRFAAPTTFKKRSVITDVGHDHHH
Sbjct: 61  PSEVHLPGYDPHTYAQNFDQGLMWDDEPDSLSRSFSMRFAAPTTFKKRSVITDVGHDHHH 120

Query: 121 DVVICVF 128
           DVVICVF
Sbjct: 121 DVVICVF 127

[Close]

BLAST of Spo02146.1 vs. NCBI nr
Match: gi|870850982|gb|KMT03048.1| (hypothetical protein BVRB_8g196100 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 181.0 bits (458), Expect = 1.300e-42
Identity = 101/152 (66.45%), Postives = 109/152 (71.71%), Query Frame = 1


		  
Query: 1   MEIRNICCSTSSVEIIQLGR-PMNLDRPLKV--------TRNNNRWRSLWKKLMREKRKI 60
           ME+RNICCS+SS +IIQLGR   NLD PLKV        T   +RWRSLWKKLMREKRKI
Sbjct: 1   MELRNICCSSSSTKIIQLGRHSTNLDLPLKVVTTTTATTTTARSRWRSLWKKLMREKRKI 60

Query: 61  RIFDCSTVHPSEVHLPGYDPHTYAQNFDQGLM-WDDEPDSLSRSFSMRFAAPT------- 120
           RIFDCST+H S+VHLPGYDP TYAQNFDQGLM  DDEPD+LSRSFSMRFAAPT       
Sbjct: 61  RIFDCSTIHSSQVHLPGYDPKTYAQNFDQGLMSLDDEPDALSRSFSMRFAAPTRLITTTT 120

Query: 121 --------TFKKRSVITDVGHDHHHDVVICVF 128
                     KKRSV   VG  H H+VVICVF
Sbjct: 121 INSSNKSVVIKKRSVSHHVG-QHDHNVVICVF 151

[Close]

BLAST of Spo02146.1 vs. NCBI nr
Match: gi|763789743|gb|KJB56739.1| (hypothetical protein B456_009G133500 [Gossypium raimondii])

HSP 1 Score: 87.8 bits (216), Expect = 1.500e-14
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1


		  
Query: 1   MEIRNICCSTSSVEIIQLGRPMNLDRPLKV-----TRNNNRWRSLWKKLMREKRKIRIFD 60
           ME+  +C  +S ++ ++  R    DR L +     T    RWR LW+KLMREK+K+  F 
Sbjct: 1   MEVSKLC--SSGIQELRW-RSNRYDRMLSISVLTTTSKVPRWRLLWRKLMREKKKV--FA 60

Query: 61  CSTVHPSEVHLPGYDPHTYAQNFDQGLMWDDEPDSLSRSFSMRFAAPT 104
           C++   S VH   YDPHTYAQNFDQGL+  D PD  SRSFS RFA P+
Sbjct: 61  CTSRTTSGVHNVSYDPHTYAQNFDQGLISAD-PDDFSRSFSARFAVPS 102

[Close]

BLAST of Spo02146.1 vs. NCBI nr
Match: gi|1009112218|ref|XP_015867177.1| (PREDICTED: uncharacterized protein LOC107404700 [Ziziphus jujuba])

HSP 1 Score: 87.8 bits (216), Expect = 1.500e-14
Identity = 46/73 (63.01%), Postives = 54/73 (73.97%), Query Frame = 1


		  
Query: 36  RWRSLWKKLMREKRKIRIFDCSTVHPSEVHLPGYDPHTYAQNFDQGLMWDDEPDSLSRSF 95
           RWR LW K+ +EK+  R+FDCST  P  VHLP YDP+TYAQNFDQG  W D PD+LSRSF
Sbjct: 46  RWRMLWIKIKKEKK--RLFDCSTYTP--VHLP-YDPYTYAQNFDQGSNWAD-PDNLSRSF 105

Query: 96  SMRFAAPTTFKKR 109
           S RFA P+   K+
Sbjct: 106 SARFAVPSRILKK 112

[Close]

BLAST of Spo02146.1 vs. NCBI nr
Match: gi|595950476|ref|XP_007216358.1| (hypothetical protein PRUPE_ppa020686mg [Prunus persica])

HSP 1 Score: 86.3 bits (212), Expect = 4.300e-14
Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = 1


		  
Query: 28  LKVTRNNN------RWRSLWKKLMREKRKIRIFDCSTVHPSEVHLPGYDPHTYAQNFDQG 87
           L +TR+ +      RWR LW+K+ +EK+++ +FDCST     VH+P YDP+TY++NFDQG
Sbjct: 7   LAITRDQSKVHVPVRWRMLWRKIKKEKKRL-LFDCST-SAQRVHVP-YDPYTYSKNFDQG 66

Query: 88  LMWDDEPDSLSRSFSMRFAAPT 104
           LMW D PD LSRSFS RFA P+
Sbjct: 67  LMWAD-PDFLSRSFSARFAVPS 84

[Close]

BLAST of Spo02146.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCU1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_080840 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 2.900e-70
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = 1


		  
Query: 1   MEIRNICCSTSSVEIIQLGRPMNLDRPLKVTRNNNRWRSLWKKLMREKRKIRIFDCSTVH 60
           MEIRNICCSTSSVEIIQLGRPMNLDRPLKVTRNNNRWRSLWKKLMREKRKIRIFDCSTVH
Sbjct: 1   MEIRNICCSTSSVEIIQLGRPMNLDRPLKVTRNNNRWRSLWKKLMREKRKIRIFDCSTVH 60

Query: 61  PSEVHLPGYDPHTYAQNFDQGLMWDDEPDSLSRSFSMRFAAPTTFKKRSVITDVGHDHHH 120
           PSEVHLPGYDPHTYAQNFDQGLMWDDEPDSLSRSFSMRFAAPTTFKKRSVITDVGHDHHH
Sbjct: 61  PSEVHLPGYDPHTYAQNFDQGLMWDDEPDSLSRSFSMRFAAPTTFKKRSVITDVGHDHHH 120

Query: 121 DVVICVF 128
           DVVICVF
Sbjct: 121 DVVICVF 127

[Close]

BLAST of Spo02146.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BT43_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g196100 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 8.900e-43
Identity = 101/152 (66.45%), Postives = 109/152 (71.71%), Query Frame = 1


		  
Query: 1   MEIRNICCSTSSVEIIQLGR-PMNLDRPLKV--------TRNNNRWRSLWKKLMREKRKI 60
           ME+RNICCS+SS +IIQLGR   NLD PLKV        T   +RWRSLWKKLMREKRKI
Sbjct: 1   MELRNICCSSSSTKIIQLGRHSTNLDLPLKVVTTTTATTTTARSRWRSLWKKLMREKRKI 60

Query: 61  RIFDCSTVHPSEVHLPGYDPHTYAQNFDQGLM-WDDEPDSLSRSFSMRFAAPT------- 120
           RIFDCST+H S+VHLPGYDP TYAQNFDQGLM  DDEPD+LSRSFSMRFAAPT       
Sbjct: 61  RIFDCSTIHSSQVHLPGYDPKTYAQNFDQGLMSLDDEPDALSRSFSMRFAAPTRLITTTT 120

Query: 121 --------TFKKRSVITDVGHDHHHDVVICVF 128
                     KKRSV   VG  H H+VVICVF
Sbjct: 121 INSSNKSVVIKKRSVSHHVG-QHDHNVVICVF 151

[Close]

BLAST of Spo02146.1 vs. UniProtKB/TrEMBL
Match: A0A0D2TJ63_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G133500 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.000e-14
Identity = 52/108 (48.15%), Postives = 67/108 (62.04%), Query Frame = 1


		  
Query: 1   MEIRNICCSTSSVEIIQLGRPMNLDRPLKV-----TRNNNRWRSLWKKLMREKRKIRIFD 60
           ME+  +C  +S ++ ++  R    DR L +     T    RWR LW+KLMREK+K+  F 
Sbjct: 1   MEVSKLC--SSGIQELRW-RSNRYDRMLSISVLTTTSKVPRWRLLWRKLMREKKKV--FA 60

Query: 61  CSTVHPSEVHLPGYDPHTYAQNFDQGLMWDDEPDSLSRSFSMRFAAPT 104
           C++   S VH   YDPHTYAQNFDQGL+  D PD  SRSFS RFA P+
Sbjct: 61  CTSRTTSGVHNVSYDPHTYAQNFDQGLISAD-PDDFSRSFSARFAVPS 102

[Close]

BLAST of Spo02146.1 vs. UniProtKB/TrEMBL
Match: M5WUR9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020686mg PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.000e-14
Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = 1


		  
Query: 28  LKVTRNNN------RWRSLWKKLMREKRKIRIFDCSTVHPSEVHLPGYDPHTYAQNFDQG 87
           L +TR+ +      RWR LW+K+ +EK+++ +FDCST     VH+P YDP+TY++NFDQG
Sbjct: 7   LAITRDQSKVHVPVRWRMLWRKIKKEKKRL-LFDCST-SAQRVHVP-YDPYTYSKNFDQG 66

Query: 88  LMWDDEPDSLSRSFSMRFAAPT 104
           LMW D PD LSRSFS RFA P+
Sbjct: 67  LMWAD-PDFLSRSFSARFAVPS 84

[Close]

BLAST of Spo02146.1 vs. UniProtKB/TrEMBL
Match: A0A061GBI6_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_028719 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.100e-14
Identity = 49/81 (60.49%), Postives = 60/81 (74.07%), Query Frame = 1


		  
Query: 30  VTRNN-NRWRSLWKKLMREKRKIRIFDCSTVHPSEVHLPGYDPHTYAQNFDQGLMWDDEP 89
           VTR+   RWR LW++LMREK+KI  FDCS+   + VH+  YDP+TYAQNFDQGLM  D P
Sbjct: 59  VTRSKLPRWRMLWRRLMREKKKI--FDCSS--STRVHV-SYDPYTYAQNFDQGLMSAD-P 118

Query: 90  DSLSRSFSMRFAAPTTFKKRS 110
           D LSRSFS RFA P+   ++S
Sbjct: 119 DDLSRSFSARFAVPSRVFEKS 133

[Close]

BLAST of Spo02146.1 vs. TAIR (Arabidopsis)
Match: AT2G25735.1 (unknown protein)

HSP 1 Score: 55.1 bits (131), Expect = 3.700e-8
Identity = 39/106 (36.79%), Postives = 52/106 (49.06%), Query Frame = 1


		  
Query: 5   NICCSTSSV-EIIQLGRPMNLDRPLKVTRNNNRWRSLWKKLMREKRKIRIFDCSTVHPSE 64
           N+  S SS  E I LGR     R  K  +   R    WK L+ + + +          S 
Sbjct: 14  NVLSSASSHRETIVLGRYSKSCREQKQHQRRERLLPKWKVLLMKLKLL------PSRASS 73

Query: 65  VHLPGYDPHTYAQNFDQGLMWD--DEPDSLSRSFSMRFAAPTTFKK 108
             +  Y+P  Y+ NFDQG  W   DEP++LSRSFS RFA PT  ++
Sbjct: 74  TKVVAYEPCDYSLNFDQGPGWHDHDEPENLSRSFSCRFADPTRIRE 113

The following BLAST results are available for this feature:

BLAST of Spo02146.1 vs. NCBI nr
BLAST of Spo02146.1 vs. UniProtKB/TrEMBL
BLAST of Spo02146.1 vs. ExPASy Swiss-Prot
BLAST of Spo02146.1 vs. TAIR (Arabidopsis)

BLAST of Spo02146.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902213787\|gb\|KNA17336.1\|	4.2e-70	100.	hypothetical protein SOVF_0808...	[more]
gi\|870850982\|gb\|KMT03048.1\|	1.3e-42	66.4	hypothetical protein BVRB_8g19...	[more]
gi\|763789743\|gb\|KJB56739.1\|	1.5e-14	48.1	hypothetical protein B456_009G...	[more]
gi\|1009112218\|ref\|XP_015867177.1\|	1.5e-14	63.0	PREDICTED: uncharacterized pro...	[more]
gi\|595950476\|ref\|XP_007216358.1\|	4.3e-14	54.8	hypothetical protein PRUPE_ppa...	[more]

BLAST of Spo02146.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RCU1_SPIOL	2.9e-70	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BT43_BETVU	8.9e-43	66.4	Uncharacterized protein OS=Bet...	[more]
A0A0D2TJ63_GOSRA	1.0e-14	48.1	Uncharacterized protein OS=Gos...	[more]
M5WUR9_PRUPE	3.0e-14	54.8	Uncharacterized protein OS=Pru...	[more]
A0A061GBI6_THECC	5.1e-14	60.4	Uncharacterized protein OS=The...	[more]

BLAST of Spo02146.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo02146.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT2G25735.1	3.7e-8	36.7	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33168	FAMILY NOT NAMED	coord: 1..117 score: 5.7
None	No IPR available	PANTHER	PTHR33168:SF12	EXPRESSED PROTEIN	coord: 1..117 score: 5.7