Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTTCATCCAATTCCTCATATAAAAGAGAGAGAATCATTTTACCTGATGGAACAAGTAGAGTTAGAACCATGTCTTTCAGGCGCATCGAGCACGATCTCAGCCGCGCATGAAGCTCCGCCACACACACGCTTATACAGACCACTGCATCAACAATACAAAACAGGTAAAGAGGCACAGCTAGAGGATCAATATCAAGATCAAGATCAAGATCAAGAGCAAGAGACAGTTTCTGAGACACATATACCATTAGATTTAATGCTGTCTAATGATGAATCATGCCATGAATTCAACGCGGAACTCAATCTCATCGACTGCTTAAACGTAGGTTCATCTCAGAGTTCATCAGAAACTCCCCAACTATCAGAAAGCTGCGAGCCTCGAGTTTTCTCATGTAATTACTGTCAGAGAAAATTCTACAGCTCGCAGGCGTTAGGTGGACACCAAAATGCTCACAAAAGAGAGCGGACTATAGCCAAAAGAAACCAGAGAATAGGAGCAACAATCGCCGCCACGGCAGCGGCGTTTGGGCATCCTTACTTACACCAACAACACAATTATTCAAACATTGCTTCCTTACCTCTTCATGGTTCTCCCAATAGATCTCTTGGAATTCAGGTACACTCCATGATCCACAAAACTCCTGCTAATAATAATACTATGACAATGTCTTCTTCTGGAAATGTGTACGGACATCAAGGGTGGTTAAGGTTACCTATCGAACAACAACCTGCGGTAGGGAAGTTAGTGACGGAGACATACCACCACGGTAGCACCACCGCAGGACCGTCTTCCAGAGGTGGCGCTGGTAGGTTCAATATAGTAGAAGAAGGGGTTACCAGTGGCGGCTGGTGGACTGGAGAAAGTCAAATTAAAAGTATTTCAGAAGACTCTACAAACCTTGATCTATCCCTCAAACTTTAA ATGGTTCATCCAATTCCTCATATAAAAGAGAGAGAATCATTTTACCTGATGGAACAAGTAGAGTTAGAACCATGTCTTTCAGGCGCATCGAGCACGATCTCAGCCGCGCATGAAGCTCCGCCACACACACGCTTATACAGACCACTGCATCAACAATACAAAACAGGTAAAGAGGCACAGCTAGAGGATCAATATCAAGATCAAGATCAAGATCAAGAGCAAGAGACAGTTTCTGAGACACATATACCATTAGATTTAATGCTGTCTAATGATGAATCATGCCATGAATTCAACGCGGAACTCAATCTCATCGACTGCTTAAACGTAGGTTCATCTCAGAGTTCATCAGAAACTCCCCAACTATCAGAAAGCTGCGAGCCTCGAGTTTTCTCATGTAATTACTGTCAGAGAAAATTCTACAGCTCGCAGGCGTTAGGTGGACACCAAAATGCTCACAAAAGAGAGCGGACTATAGCCAAAAGAAACCAGAGAATAGGAGCAACAATCGCCGCCACGGCAGCGGCGTTTGGGCATCCTTACTTACACCAACAACACAATTATTCAAACATTGCTTCCTTACCTCTTCATGGTTCTCCCAATAGATCTCTTGGAATTCAGGTACACTCCATGATCCACAAAACTCCTGCTAATAATAATACTATGACAATGTCTTCTTCTGGAAATGTGTACGGACATCAAGGGTGGTTAAGGTTACCTATCGAACAACAACCTGCGGTAGGGAAGTTAGTGACGGAGACATACCACCACGGTAGCACCACCGCAGGACCGTCTTCCAGAGGTGGCGCTGGTAGGTTCAATATAGTAGAAGAAGGGGTTACCAGTGGCGGCTGGTGGACTGGAGAAAGTCAAATTAAAAGTATTTCAGAAGACTCTACAAACCTTGATCTATCCCTCAAACTTTAA ATGGTTCATCCAATTCCTCATATAAAAGAGAGAGAATCATTTTACCTGATGGAACAAGTAGAGTTAGAACCATGTCTTTCAGGCGCATCGAGCACGATCTCAGCCGCGCATGAAGCTCCGCCACACACACGCTTATACAGACCACTGCATCAACAATACAAAACAGGTAAAGAGGCACAGCTAGAGGATCAATATCAAGATCAAGATCAAGATCAAGAGCAAGAGACAGTTTCTGAGACACATATACCATTAGATTTAATGCTGTCTAATGATGAATCATGCCATGAATTCAACGCGGAACTCAATCTCATCGACTGCTTAAACGTAGGTTCATCTCAGAGTTCATCAGAAACTCCCCAACTATCAGAAAGCTGCGAGCCTCGAGTTTTCTCATGTAATTACTGTCAGAGAAAATTCTACAGCTCGCAGGCGTTAGGTGGACACCAAAATGCTCACAAAAGAGAGCGGACTATAGCCAAAAGAAACCAGAGAATAGGAGCAACAATCGCCGCCACGGCAGCGGCGTTTGGGCATCCTTACTTACACCAACAACACAATTATTCAAACATTGCTTCCTTACCTCTTCATGGTTCTCCCAATAGATCTCTTGGAATTCAGGTACACTCCATGATCCACAAAACTCCTGCTAATAATAATACTATGACAATGTCTTCTTCTGGAAATGTGTACGGACATCAAGGGTGGTTAAGGTTACCTATCGAACAACAACCTGCGGTAGGGAAGTTAGTGACGGAGACATACCACCACGGTAGCACCACCGCAGGACCGTCTTCCAGAGGTGGCGCTGGTAGGTTCAATATAGTAGAAGAAGGGGTTACCAGTGGCGGCTGGTGGACTGGAGAAAGTCAAATTAAAAGTATTTCAGAAGACTCTACAAACCTTGATCTATCCCTCAAACTTTAA MVHPIPHIKERESFYLMEQVELEPCLSGASSTISAAHEAPPHTRLYRPLHQQYKTGKEAQLEDQYQDQDQDQEQETVSETHIPLDLMLSNDESCHEFNAELNLIDCLNVGSSQSSSETPQLSESCEPRVFSCNYCQRKFYSSQALGGHQNAHKRERTIAKRNQRIGATIAATAAAFGHPYLHQQHNYSNIASLPLHGSPNRSLGIQVHSMIHKTPANNNTMTMSSSGNVYGHQGWLRLPIEQQPAVGKLVTETYHHGSTTAGPSSRGGAGRFNIVEEGVTSGGWWTGESQIKSISEDSTNLDLSLKL Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of Spo01257.1 vs. NCBI nr
Match: gi|902145779|gb|KNA05000.1| (hypothetical protein SOVF_194430 [Spinacia oleracea]) HSP 1 Score: 615.5 bits (1586), Expect = 4.900e-173 Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 1
BLAST of Spo01257.1 vs. NCBI nr
Match: gi|731316818|ref|XP_010665880.1| (PREDICTED: zinc finger protein 3 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 472.6 bits (1215), Expect = 5.100e-130 Identity = 250/292 (85.62%), Postives = 259/292 (88.70%), Query Frame = 1
BLAST of Spo01257.1 vs. NCBI nr
Match: gi|225430380|ref|XP_002282938.1| (PREDICTED: zinc finger protein 3-like [Vitis vinifera]) HSP 1 Score: 272.3 bits (695), Expect = 1.000e-69 Identity = 163/299 (54.52%), Postives = 203/299 (67.89%), Query Frame = 1
BLAST of Spo01257.1 vs. NCBI nr
Match: gi|296082081|emb|CBI21086.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 262.7 bits (670), Expect = 8.100e-67 Identity = 143/226 (63.27%), Postives = 166/226 (73.45%), Query Frame = 1
BLAST of Spo01257.1 vs. NCBI nr
Match: gi|720030983|ref|XP_010265671.1| (PREDICTED: zinc finger protein 1-like [Nelumbo nucifera]) HSP 1 Score: 244.2 bits (622), Expect = 3.000e-61 Identity = 152/298 (51.01%), Postives = 186/298 (62.42%), Query Frame = 1
BLAST of Spo01257.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QCL9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_194430 PE=4 SV=1) HSP 1 Score: 615.5 bits (1586), Expect = 3.400e-173 Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 1
BLAST of Spo01257.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CZN2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g031180 PE=4 SV=1) HSP 1 Score: 472.6 bits (1215), Expect = 3.600e-130 Identity = 250/292 (85.62%), Postives = 259/292 (88.70%), Query Frame = 1
BLAST of Spo01257.1 vs. UniProtKB/TrEMBL
Match: F6H3J5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0008g05930 PE=4 SV=1) HSP 1 Score: 272.3 bits (695), Expect = 7.100e-70 Identity = 163/299 (54.52%), Postives = 203/299 (67.89%), Query Frame = 1
BLAST of Spo01257.1 vs. UniProtKB/TrEMBL
Match: A0A061GIJ6_THECC (C2H2 and C2HC zinc fingers superfamily protein, putative OS=Theobroma cacao GN=TCM_036928 PE=4 SV=1) HSP 1 Score: 243.8 bits (621), Expect = 2.700e-61 Identity = 142/255 (55.69%), Postives = 175/255 (68.63%), Query Frame = 1
BLAST of Spo01257.1 vs. UniProtKB/TrEMBL
Match: A5BQW1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_000223 PE=4 SV=1) HSP 1 Score: 239.6 bits (610), Expect = 5.100e-60 Identity = 153/299 (51.17%), Postives = 184/299 (61.54%), Query Frame = 1
BLAST of Spo01257.1 vs. ExPASy Swiss-Prot
Match: ZFP3_ARATH (Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1) HSP 1 Score: 147.1 bits (370), Expect = 3.100e-34 Identity = 99/232 (42.67%), Postives = 126/232 (54.31%), Query Frame = 1
BLAST of Spo01257.1 vs. ExPASy Swiss-Prot
Match: ZFP1_ARATH (Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 6.000e-30 Identity = 88/191 (46.07%), Postives = 118/191 (61.78%), Query Frame = 1
BLAST of Spo01257.1 vs. ExPASy Swiss-Prot
Match: ZFP4_ARATH (Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2) HSP 1 Score: 95.1 bits (235), Expect = 1.400e-18 Identity = 70/161 (43.48%), Postives = 85/161 (52.80%), Query Frame = 1
BLAST of Spo01257.1 vs. ExPASy Swiss-Prot
Match: ZFP2_ARATH (Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1) HSP 1 Score: 84.0 bits (206), Expect = 3.200e-15 Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 1
BLAST of Spo01257.1 vs. ExPASy Swiss-Prot
Match: ZFP7_ARATH (Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1) HSP 1 Score: 82.8 bits (203), Expect = 7.200e-15 Identity = 60/149 (40.27%), Postives = 79/149 (53.02%), Query Frame = 1
BLAST of Spo01257.1 vs. TAIR (Arabidopsis)
Match: AT5G10970.1 (C2H2 and C2HC zinc fingers superfamily protein) HSP 1 Score: 164.1 bits (414), Expect = 1.400e-40 Identity = 121/256 (47.27%), Postives = 144/256 (56.25%), Query Frame = 1
BLAST of Spo01257.1 vs. TAIR (Arabidopsis)
Match: AT5G25160.1 (zinc finger protein 3) HSP 1 Score: 147.1 bits (370), Expect = 1.700e-35 Identity = 99/232 (42.67%), Postives = 126/232 (54.31%), Query Frame = 1
BLAST of Spo01257.1 vs. TAIR (Arabidopsis)
Match: AT1G80730.1 (zinc-finger protein 1) HSP 1 Score: 132.9 bits (333), Expect = 3.400e-31 Identity = 88/191 (46.07%), Postives = 118/191 (61.78%), Query Frame = 1
BLAST of Spo01257.1 vs. TAIR (Arabidopsis)
Match: AT1G66140.1 (zinc finger protein 4) HSP 1 Score: 95.1 bits (235), Expect = 7.900e-20 Identity = 70/161 (43.48%), Postives = 85/161 (52.80%), Query Frame = 1
BLAST of Spo01257.1 vs. TAIR (Arabidopsis)
Match: AT5G57520.1 (zinc finger protein 2) HSP 1 Score: 84.0 bits (206), Expect = 1.800e-16 Identity = 44/70 (62.86%), Postives = 52/70 (74.29%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo01257.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo01257.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo01257.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo01257.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
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