Spo00927.1 (mRNA)

Overview
NameSpo00927.1
TypemRNA
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02065 : 92283 .. 94837 (+)
Sequence length2396
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTATTTTCGCTATTTTTGCTGATTGTTGATGAGATTCTGTATGGCCATGTCCCATCGAAGGTGTGTTTTCTTTTGTCATTATTTATCCAGGACTATGGATTTCGTTTCATATGATATATAGGTGAGGCCTCATTCTTGTGTATATTCTGCAGATCTGCTTTCCTCCTTTGCTCCTTCCCACTCGCTCGAACCAAATCCAACACCAGGTATCATCAATATTTCTTCATCTTTACATCATCAAGTGATTTCTAAGTTGTTAATCTGATTTTATTTAAGTATTAAATTAGAGTAATGTGTGTTGCAGAGATGAAGATTATTGCCGCTTGCTTGTTGGTTGCTTTGGGCGGTAAAGCTTGCACTACTGCCGGTGATGTCAAGAAATTTTTTGGATCAGGTATTTTTTCTCGTCTTTTTTTCATAATGGAGCTTGATTGATGAAGATAATATGTAAAATATTTATGGAGCTTGAGTAAGGGGGGGCTTGATATGGGACTTTTCAACATGACAAAGAAGAAGATCGAAACTATTTATGAAGGTGATGACGTACGTTCTATTTTCTGCACTGCCTTGTGGTTTATGCCTATGTTTTAGTGGGTTATTATTTTCATTTTTTATTAAGTATTGTATCATCAAATGTAACTTTAATAATTTGCTTAATGTTGATGGGCTAAGTTTGTTTTTTCTGCGTGTATCATTAATACTTTTGTGCCCCTTCAATAATTCTCTTTATTATATTTTTTTGGTTTGAAGCAATGTAGGCACGGAATATGATTAAGACTTTTTGTGTAACTTATTCAAATAAGATCCATTTTTCTTTTATTTAAATTGTACTTGATGTATGACTATTGAATTCTATTAAGTATTTACATGCCTTATCTTGTTAGAGCATCCATAAATTATGTTCATGTTATCATGTATATACGAAATTACGAGTATGTACGAACACGATACAATTTATACATAACCAACATAGATATGAAAATTAGTTGTCTCCACTGCAATATAATTGTATAATCTGCAATGGAATGACAATATAAGCTCCTAAATGAAAAGAAACCAAGCAAACAAAAGACCTTGAATCTTTGGTTGAACGAAAGAATGTTATATCAACATTGATATCAAGAAAACTGGACAACTCATTTTTACTTTGTTAGCATATTCAATCCTTGTCATTCATTAAGGTAAATGTTGTTGTTATCTGACAACTTGTTACGCCATTGGTTGAAAATCGAATTCAATTTGTTACTAAGATATATCATACATGACCTTATATGACTTTTGGACACTTAGAAGGTTCGAACTACCTTGATTTGCTCTTATGAAGGTTTGCATTTGCTTATATAGTGGAGCAACTTTTGATATCTCTTGCATTTGTTCAAATGACATGGTTCTGTCTTTTTATCACTTCTGTCATACTTGCTTCTTTACTTTATCATCTATGTATATATTGGTTAGATCGTTGAAGAAAGTAATAGGCCCGTTAGCATGGTTGTTGACCAAAATTAAGGGGTTGTGTGTTTCGTGGGTTGTTCTTTGTTGATAAAATAATATGTCATGTTTTGAAAACATATCATATTAATTTTGCTGTTTCTGAGATGGGAAGAATTGTCAGTTGGCCTGTGGCACTAGGTTCTGGTAGATTGCCTTCTATGATATAATTTAGGAGCTATTGTGCAGCCTGTGAAAATCTGGTGCAAGATCATGCGCTAATACCTGTTGTGTTGTTCTTAAAACTATAATGTATGCAATATATTGTCTGCATCACTGTTGACAACCTATTAGTTCATATTTGTATATTTGCATTTTCTCTTTACTGGTTTGGTTATTTTTGCTTGAAAGAATCAAATATAAAAATTGAACTAATGAGAGTGATATAATTATAAGGAGGCAATGTGACTAGAATTAATGAGGCTAAGAATTATATCTCTTGATGTCTTTGAACTTCAGATTATTGAGCAGACTATGAATTGCATGCATTGCTATTATTGATGTCTGATTTTATAGTCGTTTTGGACTCCTGTCCTGATGACCGTCTTTTAGTTTATTTACTTTGTAAAACCTAGGAGTGTATGTGGCATAGATGTTCAGGAGTAAAAATTATCTAACTGTAAGGCATGACCTAAGACAATCAGTTTGGGACAGGCAATAAAGAGATTGAAGAGAGATGATACGCATACAATGGGTGTATGTGTTGGACCACATACAAAACAATCTCAGCCGTTAGATTTAGATCTGTCCAAAATTTTAGGCGGGGAAAAAGGGTGATAGAAGGCGGTAAAATTTTGGGATTTTCCCGGGTAATAGAAGAACGCAGCGGGAAGTTTTGGCATGGGCGCCAAACTTCTGCATAGAAAAATTGGAAGCGTGTTAATGAGTTAGATGATGTTGCATTATTTGTGGGGGACAATACTTCTATGTCTGTTCGTGCATCAAACTTTAGTAATTGCAAGAGCAATTGTATTTACTTCACCGATGATGAGTGGCAATTTTGGGATGCGTCGGAGGTTAAGGGGGGGCATGATATGGGACTTTTCAACATGACAAAAAAGAAG

mRNA sequence

ATGCTATTTTCGCTATTTTTGCTGATTGTTGATGAGATTCTGTATGGCCATGTCCCATCGAAGGTGAGGCCTCATTCTTGTGTATATTCTGCAGATCTGCTTTCCTCCTTTGCTCCTTCCCACTCGCTCGAACCAAATCCAACACCAGAGATGAAGATTATTGCCGCTTGCTTGTTGGTTGCTTTGGGCGGTAAAGCTTGCACTACTGCCGGTGATGTCAAGAAATTTTTTGGATCAGGTATTTTTTCTCGTCTTTTTTTCATAATGGAGCTTGATTGATGAAGATAATATGTAAAATATTTATGGAGCTTGAGTAAGGGGGGGCTTGATATGGGACTTTTCAACATGACAAAGAAGAAGATCGAAACTATTTATGAAGGTGATGACGTACGTTCTATTTTCTGCACTGCCTTGTGGTTTATGCCTATGTTTTAGTGGGTTATTATTTTCATTTTTTATTAAGTATTGTATCATCAAATGTAACTTTAATAATTTGCTTAATGTTGATGGGCTAAGTTTGTTTTTTCTGCGTGTATCATTAATACTTTTGTGCCCCTTCAATAATTCTCTTTATTATATTTTTTTGGTTTGAAGCAATGTAGGCACGGAATATGATTAAGACTTTTTGTGTAACTTATTCAAATAAGATCCATTTTTCTTTTATTTAAATTGTACTTGATGTATGACTATTGAATTCTATTAAGTATTTACATGCCTTATCTTGTTAGAGCATCCATAAATTATGTTCATGTTATCATGTATATACGAAATTACGAGTATGTACGAACACGATACAATTTATACATAACCAACATAGATATGAAAATTAGTTGTCTCCACTGCAATATAATTGTATAATCTGCAATGGAATGACAATATAAGCTCCTAAATGAAAAGAAACCAAGCAAACAAAAGACCTTGAATCTTTGGTTGAACGAAAGAATGTTATATCAACATTGATATCAAGAAAACTGGACAACTCATTTTTACTTTGTTAGCATATTCAATCCTTGTCATTCATTAAGGTAAATGTTGTTGTTATCTGACAACTTGTTACGCCATTGGTTGAAAATCGAATTCAATTTGTTACTAAGATATATCATACATGACCTTATATGACTTTTGGACACTTAGAAGGTTCGAACTACCTTGATTTGCTCTTATGAAGGTTTGCATTTGCTTATATAGTGGAGCAACTTTTGATATCTCTTGCATTTGTTCAAATGACATGGTTCTGTCTTTTTATCACTTCTGTCATACTTGCTTCTTTACTTTATCATCTATGTATATATTGGTTAGATCGTTGAAGAAAGTAATAGGCCCGTTAGCATGGTTGTTGACCAAAATTAAGGGGTTGTGTGTTTCGTGGGTTGTTCTTTGTTGATAAAATAATATGTCATGTTTTGAAAACATATCATATTAATTTTGCTGTTTCTGAGATGGGAAGAATTGTCAGTTGGCCTGTGGCACTAGGTTCTGGTAGATTGCCTTCTATGATATAATTTAGGAGCTATTGTGCAGCCTGTGAAAATCTGGTGCAAGATCATGCGCTAATACCTGTTGTGTTGTTCTTAAAACTATAATGTATGCAATATATTGTCTGCATCACTGTTGACAACCTATTAGTTCATATTTGTATATTTGCATTTTCTCTTTACTGGTTTGGTTATTTTTGCTTGAAAGAATCAAATATAAAAATTGAACTAATGAGAGTGATATAATTATAAGGAGGCAATGTGACTAGAATTAATGAGGCTAAGAATTATATCTCTTGATGTCTTTGAACTTCAGATTATTGAGCAGACTATGAATTGCATGCATTGCTATTATTGATGTCTGATTTTATAGTCGTTTTGGACTCCTGTCCTGATGACCGTCTTTTAGTTTATTTACTTTGTAAAACCTAGGAGTGTATGTGGCATAGATGTTCAGGAGTAAAAATTATCTAACTGTAAGGCATGACCTAAGACAATCAGTTTGGGACAGGCAATAAAGAGATTGAAGAGAGATGATACGCATACAATGGGTGTATGTGTTGGACCACATACAAAACAATCTCAGCCGTTAGATTTAGATCTGTCCAAAATTTTAGGCGGGGAAAAAGGGTGATAGAAGGCGGTAAAATTTTGGGATTTTCCCGGGTAATAGAAGAACGCAGCGGGAAGTTTTGGCATGGGCGCCAAACTTCTGCATAGAAAAATTGGAAGCGTGTTAATGAGTTAGATGATGTTGCATTATTTGTGGGGGACAATACTTCTATGTCTGTTCGTGCATCAAACTTTAGTAATTGCAAGAGCAATTGTATTTACTTCACCGATGATGAGTGGCAATTTTGGGATGCGTCGGAGGTTAAGGGGGGGCATGATATGGGACTTTTCAACATGACAAAAAAGAAG

Coding sequence (CDS)

ATGCTATTTTCGCTATTTTTGCTGATTGTTGATGAGATTCTGTATGGCCATGTCCCATCGAAGGTGAGGCCTCATTCTTGTGTATATTCTGCAGATCTGCTTTCCTCCTTTGCTCCTTCCCACTCGCTCGAACCAAATCCAACACCAGAGATGAAGATTATTGCCGCTTGCTTGTTGGTTGCTTTGGGCGGTAAAGCTTGCACTACTGCCGGTGATGTCAAGAAATTTTTTGGATCAGGTATTTTTTCTCGTCTTTTTTTCATAATGGAGCTTGATTGA

Protein sequence

MLFSLFLLIVDEILYGHVPSKVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTAGDVKKFFGSGIFSRLFFIMELD
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Spo00927Spo00927gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Spo00927.1Spo00927.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00927.1.exon.1Spo00927.1.exon.1exon
Spo00927.1.exon.2Spo00927.1.exon.2exon
Spo00927.1.exon.3Spo00927.1.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00927.1.CDS.1Spo00927.1.CDS.1CDS
Spo00927.1.CDS.2Spo00927.1.CDS.2CDS
Spo00927.1.CDS.3Spo00927.1.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Spo00927.1.utr3p.1Spo00927.1.utr3p.1three_prime_UTR


Homology
[Close]
BLAST of Spo00927.1 vs. NCBI nr
Match: gi|902194110|gb|KNA12455.1| (hypothetical protein SOVF_125880 isoform A [Spinacia oleracea])

HSP 1 Score: 151.4 bits (381), Expect = 7.900e-34
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 1 

		  

Query: 11  DEILYGHVPSKVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 70
           D+  Y  +  +VRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA
Sbjct: 179 DDFSYQTIDFEVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 238

Query: 71  GDVKKFFGSGIFSRLFFIMELD 93
           GDVKKFFGSGIFSRLFFIMELD
Sbjct: 239 GDVKKFFGSGIFSRLFFIMELD 260
[Close]
BLAST of Spo00927.1 vs. NCBI nr
Match: gi|902194111|gb|KNA12456.1| (hypothetical protein SOVF_125860 isoform B [Spinacia oleracea])

HSP 1 Score: 126.7 bits (317), Expect = 2.100e-26
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 1 

		  

Query: 11  DEILYGHVPSKVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 70
           D+  Y  +  +VRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA
Sbjct: 179 DDFSYQTIDFEVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 238

Query: 71  GDVKKFFGS 80
           GDVKKFFGS
Sbjct: 239 GDVKKFFGS 247
[Close]
BLAST of Spo00927.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QYW7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_125880 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 5.500e-34
Identity = 73/82 (89.02%), Postives = 76/82 (92.68%), Query Frame = 1 

		  

Query: 11  DEILYGHVPSKVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 70
           D+  Y  +  +VRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA
Sbjct: 179 DDFSYQTIDFEVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 238

Query: 71  GDVKKFFGSGIFSRLFFIMELD 93
           GDVKKFFGSGIFSRLFFIMELD
Sbjct: 239 GDVKKFFGSGIFSRLFFIMELD 260
[Close]
BLAST of Spo00927.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R0X0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_125860 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.400e-26
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 1 

		  

Query: 11  DEILYGHVPSKVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 70
           D+  Y  +  +VRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA
Sbjct: 179 DDFSYQTIDFEVRPHSCVYSADLLSSFAPSHSLEPNPTPEMKIIAACLLVALGGKACTTA 238

Query: 71  GDVKKFFGS 80
           GDVKKFFGS
Sbjct: 239 GDVKKFFGS 247
[Close]
BLAST of Spo00927.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RL41_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_060360 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.200e-6
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 1 

		  

Query: 45 PNPTPEMKIIAACLLVALGGKACTTAGDVKK 76
          PNPTPEMKI+AACLL ALGGKAC T  D+KK
Sbjct: 14 PNPTPEMKIVAACLLSALGGKACPTVDDIKK 44
The following BLAST results are available for this feature:
BLAST of Spo00927.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
Match NameE-valueIdentityDescription
gi|902194110|gb|KNA12455.1|7.9e-3489.0hypothetical protein SOVF_1258... [more]
gi|902194111|gb|KNA12456.1|2.1e-2686.9hypothetical protein SOVF_1258... [more]
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BLAST of Spo00927.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3
Match NameE-valueIdentityDescription
A0A0K9QYW7_SPIOL5.5e-3489.0Uncharacterized protein OS=Spi... [more]
A0A0K9R0X0_SPIOL1.4e-2686.9Uncharacterized protein OS=Spi... [more]
A0A0K9RL41_SPIOL8.2e-680.6Uncharacterized protein (Fragm... [more]
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BLAST of Spo00927.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo00927.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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